TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0546.10
         (175 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11910 similar to GB|CAA54498.1|602891|SCIILDNA YBL0422 {Saccha...   357  e-100
TC18555 similar to GB|AAP68307.1|31711902|BT008868 At2g33570 {Ar...    47  2e-06
TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)         45  7e-06
TC8179 weakly similar to GB|AAC96325.1|4028592|AF104902 ZIC2 pro...    44  1e-05
AV418706                                                               44  2e-05
TC16761 similar to GB|AAL32703.1|17065098|AY062625 nucleotide su...    44  2e-05
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)           44  2e-05
AV409412                                                               42  4e-05
TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, parti...    41  1e-04
AW720177                                                               40  2e-04
TC14439 similar to UP|Q9FIC1 (Q9FIC1) Gb|AAF19567.1, partial (49%)     40  2e-04
CB826639                                                               40  2e-04
AV410227                                                               40  3e-04
TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase  , part...    40  3e-04
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar...    40  3e-04
BP030058                                                               39  4e-04
TC8484 similar to UP|Q9XGP1 (Q9XGP1) ESTs AU070372(S13446), part...    39  4e-04
AV422284                                                               39  5e-04
BP043764                                                               39  5e-04
TC9115 similar to PIR|T00425|T00425 photolyase/blue-light recept...    39  5e-04

>TC11910 similar to GB|CAA54498.1|602891|SCIILDNA YBL0422 {Saccharomyces
           cerevisiae;} , partial (6%)
          Length = 638

 Score =  357 bits (917), Expect = e-100
 Identities = 171/171 (100%), Positives = 171/171 (100%)
 Frame = +1

Query: 5   SYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKC 64
           SYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKC
Sbjct: 1   SYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKC 180

Query: 65  RHKPPKPPRLFMIIDPILLLNGFGGAGFYLDTQTLLATVSVLAAIALSLFLGLKGDPVPC 124
           RHKPPKPPRLFMIIDPILLLNGFGGAGFYLDTQTLLATVSVLAAIALSLFLGLKGDPVPC
Sbjct: 181 RHKPPKPPRLFMIIDPILLLNGFGGAGFYLDTQTLLATVSVLAAIALSLFLGLKGDPVPC 360

Query: 125 ERCAGNGGMKCVFCNDGKMKQEMGLIDCKVCKGSGLILCKKCGGSGYSRRL 175
           ERCAGNGGMKCVFCNDGKMKQEMGLIDCKVCKGSGLILCKKCGGSGYSRRL
Sbjct: 361 ERCAGNGGMKCVFCNDGKMKQEMGLIDCKVCKGSGLILCKKCGGSGYSRRL 513


>TC18555 similar to GB|AAP68307.1|31711902|BT008868 At2g33570 {Arabidopsis
           thaliana;}, partial (19%)
          Length = 759

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 31/69 (44%), Positives = 38/69 (54%), Gaps = 5/69 (7%)
 Frame = +2

Query: 10  HPLSSSSLPPSSSSSSSSSTSLHLSPC--SSHSLPQPSPPPPSKSHFPSLPR---FPSKC 64
           + LSS + PP+S+SSS  S+S   SP   SS  L  PSP P S S  P  P    FPS  
Sbjct: 83  YSLSSETTPPNSNSSSPPSSSSAPSPLSFSSSLLASPSPLPISVSASPESPNPNLFPSPK 262

Query: 65  RHKPPKPPR 73
           +  PP PP+
Sbjct: 263 KPPPPPPPQ 289



 Score = 32.7 bits (73), Expect = 0.036
 Identities = 28/84 (33%), Positives = 37/84 (43%), Gaps = 10/84 (11%)
 Frame = +2

Query: 3   TLSYSTLHPLSSSSLPPSSSSSSS----------SSTSLHLSPCSSHSLPQPSPPPPSKS 52
           +LS  T  P S+SS PPSSSS+ S          S + L +S  +S   P P+  P  K 
Sbjct: 86  SLSSETTPPNSNSSSPPSSSSAPSPLSFSSSLLASPSPLPISVSASPESPNPNLFPSPKK 265

Query: 53  HFPSLPRFPSKCRHKPPKPPRLFM 76
             P            PP+P RL +
Sbjct: 266 PPPP----------PPPQPHRLLL 307



 Score = 25.8 bits (55), Expect = 4.4
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 3   TLSYSTLHPLSSSSLPPSSSS---SSSSSTSLHLSPCSSHSLPQPSPPPP 49
           T S S L    S    P S S    ++++T+   SP     LP PSPPPP
Sbjct: 190 TFSASDLRVCISRVTQPQSVSITQKTATTTTTATSP-PPPVLPPPSPPPP 336



 Score = 25.0 bits (53), Expect = 7.4
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +2

Query: 11 PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFP 55
          PLSSS   PSSS+  S +        S +SL   + PP S S  P
Sbjct: 8  PLSSS---PSSSALRSRARRRKRERRSCYSLSSETTPPNSNSSSP 133


>TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)
          Length = 1036

 Score = 45.1 bits (105), Expect = 7e-06
 Identities = 32/83 (38%), Positives = 44/83 (52%), Gaps = 11/83 (13%)
 Frame = +3

Query: 1   MATLSYSTLHPLSSSSLPP-----SSSSSSSSSTSLHLSPCSSHSLP--QPSPPPPSKSH 53
           +  L+ ST  P +++S P      SSSSSSSSS+++  SP +S + P   PSP PPS S 
Sbjct: 144 LTALNPSTAAPAAAASAPSASG*SSSSSSSSSSSAVLASPSTSSTAPTTPPSPSPPSNSP 323

Query: 54  F----PSLPRFPSKCRHKPPKPP 72
                P  P  P+     PP+ P
Sbjct: 324 TSTSPPPQPSPPNSTSPSPPQTP 392



 Score = 30.8 bits (68), Expect = 0.14
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 19/70 (27%)
 Frame = +1

Query: 35  PCSSHSLPQPSPPPP--------SKSHFPSLPRFPSKCRHK-----PPKPPRLF------ 75
           PC   S P P  PPP        +  H P  P    +C  +     PP PP L       
Sbjct: 139 PCLPPSTPPPPHPPPLLLHLLLLANPHHPHPPPHHRRCWRRLLPPLPPPPPHLLRHLPQT 318

Query: 76  MIIDPILLLN 85
           ++  P LLLN
Sbjct: 319 LLPQPHLLLN 348


>TC8179 weakly similar to GB|AAC96325.1|4028592|AF104902 ZIC2 protein {Homo
           sapiens;} , partial (4%)
          Length = 587

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -3

Query: 2   ATLSYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFP-SLPRF 60
           +T S+S   P S S   P+S+ S++SS +L  S       P+P PPPP     P   PR 
Sbjct: 411 STASHSGYSPSSDSKTEPASTPSATSSKALSSSHKPDPPTPEPDPPPPPSLKKP*PKPRK 232

Query: 61  PSKCRHKPPK 70
           PS+   K P+
Sbjct: 231 PSRSIRKTPR 202



 Score = 27.7 bits (60), Expect = 1.1
 Identities = 25/68 (36%), Positives = 29/68 (41%), Gaps = 7/68 (10%)
 Frame = -3

Query: 14  SSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPP-------SKSHFPSLPRFPSKCRH 66
           SS    SSSSSS+S+ S      SS S  +P+  P        S SH P     P     
Sbjct: 450 SS*FSSSSSSSSASTASHSGYSPSSDSKTEPASTPSATSSKALSSSHKPD----PPTPEP 283

Query: 67  KPPKPPRL 74
            PP PP L
Sbjct: 282 DPPPPPSL 259


>AV418706 
          Length = 374

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 35/81 (43%), Positives = 40/81 (49%), Gaps = 17/81 (20%)
 Frame = +1

Query: 9   LHPLSS---------SSLPPSSSSSSSSSTSLHLSPCSSHS-----LPQPSPP---PPSK 51
           LHPL++         SS   SSSSSSSSS+S   +P S+ S     LP PS     PPS 
Sbjct: 124 LHPLAAAAATVAAAHSSAGSSSSSSSSSSSSAPPAPSSTSSTTLNALPSPSRHSNFPPSN 303

Query: 52  SHFPSLPRFPSKCRHKPPKPP 72
           S  P  P  PS   H PP  P
Sbjct: 304 SPPPPPPSPPSSNSHSPPPTP 366


>TC16761 similar to GB|AAL32703.1|17065098|AY062625 nucleotide sugar
           epimerase-like protein {Arabidopsis thaliana;}, partial
           (40%)
          Length = 794

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 30/65 (46%), Positives = 35/65 (53%)
 Frame = +1

Query: 5   SYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKC 64
           S+STL P +SSS PPSSS SSSSS        SS S   PSPP P  +  P+    P   
Sbjct: 250 SFSTLPP-NSSSAPPSSSHSSSSS--------SSPSTTLPSPPTPPTTSTPTPTSSPPHS 402

Query: 65  RHKPP 69
             +PP
Sbjct: 403 AAEPP 417



 Score = 30.0 bits (66), Expect = 0.23
 Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
 Frame = +1

Query: 26  SSSTSLHLSPCSSHSLP-QPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           +++TS+  +  S  +LP   S  PPS SH  S    PS     PP PP
Sbjct: 217 TTATSVKSTAQSFSTLPPNSSSAPPSSSHSSSSSSSPSTTLPSPPTPP 360


>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
          Length = 1008

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 32/63 (50%), Positives = 36/63 (56%), Gaps = 9/63 (14%)
 Frame = +1

Query: 7   STLHPLSSSSLPPSSSSSSSSSTSLH---LSPCSSHSL------PQPSPPPPSKSHFPSL 57
           S+  P SSSS PPSSSSSSSSS+S      SP SS S       P P+P PPS + F  L
Sbjct: 316 SSSTPSSSSSSPPSSSSSSSSSSSSSSSWSSPSSSSSSSPFSSGPAPAPGPPSGAFFELL 495

Query: 58  PRF 60
             F
Sbjct: 496 LLF 504



 Score = 30.8 bits (68), Expect = 0.14
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +1

Query: 20  SSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKS 52
           S+SSSSSSS+S  LS  S+ S    SPP  S S
Sbjct: 271 SASSSSSSSSSSSLSSSSTPSSSSSSPPSSSSS 369



 Score = 30.4 bits (67), Expect = 0.18
 Identities = 20/41 (48%), Positives = 21/41 (50%)
 Frame = +1

Query: 12  LSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKS 52
           L   S   SSSSSSSSS S   +P SS S P  S    S S
Sbjct: 259 LGGCSASSSSSSSSSSSLSSSSTPSSSSSSPPSSSSSSSSS 381



 Score = 28.9 bits (63), Expect = 0.51
 Identities = 24/77 (31%), Positives = 34/77 (43%), Gaps = 4/77 (5%)
 Frame = +2

Query: 5   SYSTLHPLSSSS--LPPSSSSSSSSSTSLHLS--PCSSHSLPQPSPPPPSKSHFPSLPRF 60
           SY+T+     S+  +  +SSSS  ++   HL   P   H LP   P PP   H   L R 
Sbjct: 194 SYTTIQTGGGSTQLMLFTSSSSWGAAVLPHLPHPPPRLHYLPLQHPLPPHLLHHHPLHRH 373

Query: 61  PSKCRHKPPKPPRLFMI 77
             +  H P  P  L ++
Sbjct: 374 LHRRHHHPLGPHHLHLL 424



 Score = 27.7 bits (60), Expect = 1.1
 Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +1

Query: 13  SSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKP---P 69
           SSSS   SS SSSS+ +S   SP SS S    S    S    PS     S     P   P
Sbjct: 283 SSSSSSSSSLSSSSTPSSSSSSPPSSSSSSSSSSSSSSSWSSPSSSSSSSPFSSGPAPAP 462

Query: 70  KPP 72
            PP
Sbjct: 463 GPP 471



 Score = 26.6 bits (57), Expect = 2.6
 Identities = 24/68 (35%), Positives = 27/68 (39%)
 Frame = +1

Query: 2   ATLSYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFP 61
           A + Y  L     S+   SSSSSSSS +S      SS S P  S    S S   S    P
Sbjct: 232 ANVVYFFLFLGGCSASSSSSSSSSSSLSSSSTPSSSSSSPPSSSSSSSSSSSSSSSWSSP 411

Query: 62  SKCRHKPP 69
           S      P
Sbjct: 412 SSSSSSSP 435



 Score = 24.6 bits (52), Expect = 9.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 3   TLSYSTLHPLSSSSLPPSSSSSSSSSTSLHL 33
           T+  ST+H   SSS P   SS  S   SL L
Sbjct: 973 TIQRSTMHGACSSSFPRF*SSKPSDPASLSL 881


>AV409412 
          Length = 426

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 31/69 (44%), Positives = 33/69 (46%), Gaps = 3/69 (4%)
 Frame = +1

Query: 7   STLHPL---SSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSK 63
           STL P    SS SLPPS + S       HLSP  S SLP PSP P + S        PS 
Sbjct: 190 STLAPPTIPSSPSLPPSRNPSLLH----HLSPSPSLSLPSPSPSPSTSSATSPPTPPPSS 357

Query: 64  CRHKPPKPP 72
               PP PP
Sbjct: 358 PPSSPPPPP 384



 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 30/59 (50%), Positives = 32/59 (53%), Gaps = 4/59 (6%)
 Frame = +1

Query: 7   STLHPLSSS---SLP-PSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFP 61
           S LH LS S   SLP PS S S+SS+TS    P SS     P PPPPS S  PS    P
Sbjct: 250 SLLHHLSPSPSLSLPSPSPSPSTSSATSPPTPPPSSPPSSPPPPPPPSTSSPPSTTPSP 426



 Score = 26.2 bits (56), Expect = 3.3
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 45  SPPPPSKSHFPSLPRFPSKCRHKP--PKPPRLFMIIDPILL 83
           SPPPPS +  PS P  P+     P  P  P L    +P LL
Sbjct: 136 SPPPPSSA*TPS*PTNPASTLAPPTIPSSPSLPPSRNPSLL 258


>TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (28%)
          Length = 695

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 29/59 (49%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +2

Query: 7   STLHP-LSSSSLPPSSSSSSSSSTSLH-LSPCSSHSLPQPSPPPPSKSHFPSLPRFPSK 63
           ST  P  SSS LPP  S+S+S  ++LH LSP    S PQP+   P  S  P LP  PSK
Sbjct: 176 STTKPNTSSSQLPPDPSNSNSHPSTLHPLSP----SPPQPTTALPRPSSSPRLPTGPSK 340


>AW720177 
          Length = 505

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 26/63 (41%), Positives = 29/63 (45%)
 Frame = +1

Query: 11  PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPK 70
           P S +S P   SS S+S TS   SP S  S P    PPP  +H  S    PS     PP 
Sbjct: 151 PPSKTSKPSGHSSESNSPTSKPTSPISPPSFP----PPPPPTHSLSTSSTPSPPLSTPPS 318

Query: 71  PPR 73
           P R
Sbjct: 319 PSR 327



 Score = 30.0 bits (66), Expect = 0.23
 Identities = 13/34 (38%), Positives = 17/34 (49%)
 Frame = +2

Query: 40  SLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPPR 73
           ++P P PPP   +  P  PR P +    PP P R
Sbjct: 329 TVPLPHPPPSRXAPNPKRPRLPPRHPRLPPLPLR 430



 Score = 26.9 bits (58), Expect = 2.0
 Identities = 21/55 (38%), Positives = 26/55 (47%)
 Frame = +1

Query: 18  PPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           PP+ S S+SS+ S  LS   S S    +PPP S +   S P    K    P  PP
Sbjct: 256 PPTHSLSTSSTPSPPLSTPPSPSRNSATPPPTSLA-XSSKP----KATSTPSSPP 405



 Score = 25.0 bits (53), Expect = 7.4
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +2

Query: 37  SSHSLPQPSPPPPSKSHFPSLPRFPSKC------RHKPPKPPRLFM 76
           S H L  PS  PP + + P  P+  ++        H+PP PP  F+
Sbjct: 98  SYHRLRSPSNFPPRRRN-PHRPKPQNQVVTRPSQTHQPPNPPHRFL 232



 Score = 24.6 bits (52), Expect = 9.7
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
 Frame = +1

Query: 10  HPLSSSSLP-------PSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFP- 61
           H LS+SS P       PS S +S++     L+  S          PPS +  P+   +  
Sbjct: 265 HSLSTSSTPSPPLSTPPSPSRNSATPPPTSLAXSSKPKATSTPSSPPSTATSPTATYYSV 444

Query: 62  SKCRHKPPKPP 72
                 PP PP
Sbjct: 445 VDSSSTPPLPP 477


>TC14439 similar to UP|Q9FIC1 (Q9FIC1) Gb|AAF19567.1, partial (49%)
          Length = 2120

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 24/45 (53%), Positives = 27/45 (59%), Gaps = 7/45 (15%)
 Frame = +1

Query: 11 PLSSSSLPPSSSSSSSSSTSLHLSP-------CSSHSLPQPSPPP 48
          PLSSSS     SSSS+ ST+LHLSP         +H  P PSPPP
Sbjct: 7  PLSSSSSSSKPSSSSTDSTNLHLSPQFYAVTVAGAHHAP-PSPPP 138


>CB826639 
          Length = 542

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 32/66 (47%)
 Frame = -3

Query: 10  HPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPP 69
           H L  +  PP+   ++++S     S   ++ LPQ  PPPP  S FP       +C  KPP
Sbjct: 468 HRLKHT*NPPARRGTAAASPPAPPSNKPAYQLPQNPPPPPPTSPFPR-----RECLSKPP 304

Query: 70  KPPRLF 75
             PR F
Sbjct: 303 LTPRRF 286


>AV410227 
          Length = 428

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 13  SSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKS-HFPSLPRFPSKCRHKPPKP 71
           SSS+  P+S  S+S +T     P SS   P  SPPPPS +   PS P  P      PP P
Sbjct: 169 SSSATSPTSPLSTSPTTPTPTPPPSSPPSPASSPPPPSMTPPAPSTP--PPSSA*SPPPP 342

Query: 72  P 72
           P
Sbjct: 343 P 345



 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 23/55 (41%), Positives = 31/55 (55%)
 Frame = +1

Query: 18  PPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           PPS++SSS++S +  LS  +S + P P+PPP S     S P  PS     P  PP
Sbjct: 154 PPSTASSSATSPTSPLS--TSPTTPTPTPPPSSPPSPASSPPPPSMTPPAPSTPP 312



 Score = 35.0 bits (79), Expect = 0.007
 Identities = 25/74 (33%), Positives = 33/74 (43%), Gaps = 12/74 (16%)
 Frame = +1

Query: 11  PLSSSSLPP------SSSSSSSSSTSLHLSPCSSHSLPQPSPP------PPSKSHFPSLP 58
           P SS++ PP      +SSS++S ++ L  SP +    P PS P      PP  S  P  P
Sbjct: 121 PPSSNASPPRPPPSTASSSATSPTSPLSTSPTTPTPTPPPSSPPSPASSPPPPSMTPPAP 300

Query: 59  RFPSKCRHKPPKPP 72
             P       P PP
Sbjct: 301 STPPPSSA*SPPPP 342



 Score = 30.4 bits (67), Expect = 0.18
 Identities = 21/53 (39%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
 Frame = +1

Query: 7   STLHPLSSSSLPPSSSSSSSSSTSLHLS-PCSSHSLPQPSPPPPSKSHFPSLP 58
           S   PLS+S   P+ +   SS  S   S P  S + P PS PPPS +  P  P
Sbjct: 184 SPTSPLSTSPTTPTPTPPPSSPPSPASSPPPPSMTPPAPSTPPPSSA*SPPPP 342



 Score = 28.5 bits (62), Expect = 0.67
 Identities = 20/65 (30%), Positives = 24/65 (36%)
 Frame = +1

Query: 8  TLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHK 67
          TLH     SL  S S S S S    +  C +   P P  PP S +  P  P   +     
Sbjct: 4  TLHTTQDLSLSLSLSLSLSLSPPWTIHRCRTSQFPGPH*PPSSNASPPRPPPSTASSSAT 183

Query: 68 PPKPP 72
           P  P
Sbjct: 184SPTSP 198



 Score = 25.0 bits (53), Expect = 7.4
 Identities = 22/65 (33%), Positives = 28/65 (42%), Gaps = 14/65 (21%)
 Frame = +1

Query: 11  PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPP--------------PSKSHFPS 56
           P  +SS PP S +  + ST     P S+ S   P PPP              P  ++ PS
Sbjct: 250 PSPASSPPPPSMTPPAPSTP---PPSSA*S---PPPPPS*AGSPPAVEPLSAPPCANSPS 411

Query: 57  LPRFP 61
            PRFP
Sbjct: 412 PPRFP 426


>TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase  , partial (42%)
          Length = 519

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 28/67 (41%), Positives = 32/67 (46%)
 Frame = +2

Query: 5   SYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKC 64
           S ST + L+S S  PS+ SSSSS TS   S     S P PSPPPP  +   S        
Sbjct: 206 SESTSNSLASPSTTPSTPSSSSSPTS--PSTTKQISTPSPSPPPPVATAASSSKNSAEPR 379

Query: 65  RHKPPKP 71
           R K   P
Sbjct: 380 RFKSSSP 400



 Score = 35.4 bits (80), Expect = 0.005
 Identities = 24/67 (35%), Positives = 30/67 (43%), Gaps = 4/67 (5%)
 Frame = +2

Query: 10  HPLSSSSLPPSSS----SSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCR 65
           HP  +S  PPS S     SSS STS      +S + P  +P  PS S  P+ P    +  
Sbjct: 146 HPSPTSGSPPSDSPHRVGSSSESTS------NSLASPSTTPSTPSSSSSPTSPSTTKQIS 307

Query: 66  HKPPKPP 72
              P PP
Sbjct: 308 TPSPSPP 328


>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
           thaliana;}, partial (44%)
          Length = 700

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 24/39 (61%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = -2

Query: 16  SLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPP--PPSKS 52
           S+P SSSSSSSSS+S   S  SS S P P PP  PPS S
Sbjct: 243 SVPKSSSSSSSSSSSSSSSSSSSGSPPPPRPPSTPPSSS 127



 Score = 35.4 bits (80), Expect = 0.005
 Identities = 22/42 (52%), Positives = 23/42 (54%)
 Frame = -2

Query: 11  PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKS 52
           P    S PPSSSSSSSSS+S      SS S   PS   PS S
Sbjct: 162 PPRPPSTPPSSSSSSSSSSSSPPPGASSSSSSSPSSSSPSSS 37



 Score = 33.9 bits (76), Expect = 0.016
 Identities = 28/72 (38%), Positives = 30/72 (40%), Gaps = 11/72 (15%)
 Frame = -2

Query: 11  PLSSSSLPPSSSSSSSSSTSLHLSP-----------CSSHSLPQPSPPPPSKSHFPSLPR 59
           P SSSS   SSSSSSSSS+S    P            SS S    SPPP + S   S P 
Sbjct: 237 PKSSSSSSSSSSSSSSSSSSSGSPPPPRPPSTPPSSSSSSSSSSSSPPPGASSSSSSSPS 58

Query: 60  FPSKCRHKPPKP 71
             S        P
Sbjct: 57  SSSPSSSSSSSP 22



 Score = 30.8 bits (68), Expect = 0.14
 Identities = 20/38 (52%), Positives = 22/38 (57%)
 Frame = -2

Query: 5   SYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLP 42
           S S+    SSSS PP +SSSSSSS S      SS S P
Sbjct: 135 SSSSSSSSSSSSPPPGASSSSSSSPSSSSPSSSSSSSP 22



 Score = 28.9 bits (63), Expect = 0.51
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
 Frame = -2

Query: 13  SSSSLPPSSSSSSSSSTSLHLSPCSS--------HSLPQPSPPPPSKSHFPSLPRFPSKC 64
           S SSL  SS SSSS S SL  S  S+        +S+P+ S    S S   S     S  
Sbjct: 348 SPSSLSLSSPSSSSGSKSLDASSSSAAATVRRTRYSVPKSSSSSSSSSS-SSSSSSSSSG 172

Query: 65  RHKPPKPP 72
              PP+PP
Sbjct: 171 SPPPPRPP 148



 Score = 25.0 bits (53), Expect = 7.4
 Identities = 26/52 (50%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
 Frame = -2

Query: 9   LHPLSSSSLPPSSSSSSSSSTS-LHL-------SPCSSHSLPQPSPPPPSKS 52
           L  LSSSS P S SSS   S S L L       SP SS SL  PS    SKS
Sbjct: 447 LEGLSSSSPPSSESSSPEPSLSDLFLFDGTPAFSP-SSLSLSSPSSSSGSKS 295


>BP030058 
          Length = 455

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = -1

Query: 18  PPSSSSSSSSSTSLHLSPCSSHSLPQPSPP--PPSKSHFPSLPRFPSKCRHKPPKPPRLF 75
           PP   S S     L   PC S   P PSPP  PP     P  P  P  C    P PPR+ 
Sbjct: 407 PPPPPSPSPPPPPL---PCPSPPPPPPSPPPPPPPSPPPPKYPSCPQNCNPLSPPPPRII 237

Query: 76  MI 77
            +
Sbjct: 236 YV 231



 Score = 31.6 bits (70), Expect = 0.079
 Identities = 17/38 (44%), Positives = 18/38 (46%)
 Frame = -1

Query: 35  PCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           PC   +   P PPPPS    PS P  P  C   PP PP
Sbjct: 434 PCGD-TCGDPPPPPPS----PSPPPPPLPCPSPPPPPP 336


>TC8484 similar to UP|Q9XGP1 (Q9XGP1) ESTs AU070372(S13446), partial (76%)
          Length = 1121

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 11  PLSSS---SLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSL-PRFPSKCRH 66
           PLSS    S PP+S  S SSST    +P  SH  P P  PPPS S   SL P +P+    
Sbjct: 145 PLSSHPNPSSPPNSPPSPSSSTVATPNPSDSH--PPPPSPPPSPSATNSLNPPYPTSTTP 318

Query: 67  KPPKP 71
              KP
Sbjct: 319 ARSKP 333



 Score = 28.1 bits (61), Expect = 0.88
 Identities = 27/77 (35%), Positives = 29/77 (37%), Gaps = 17/77 (22%)
 Frame = +1

Query: 13  SSSSLPPSSSSSSSSSTSL---HL-SPCSSHSLPQPSPP-------------PPSKSHFP 55
           SS+  P   S SS+  T     HL SP     LP PSPP             PPS S   
Sbjct: 31  SSTQNPFLHSLSSAPFTHTL*WHLQSPYPGSFLPPPSPPLSSHPNPSSPPNSPPSPSSST 210

Query: 56  SLPRFPSKCRHKPPKPP 72
                PS     PP PP
Sbjct: 211 VATPNPSDSHPPPPSPP 261



 Score = 26.9 bits (58), Expect = 2.0
 Identities = 22/67 (32%), Positives = 30/67 (43%), Gaps = 8/67 (11%)
 Frame = +1

Query: 7   STLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPS--------KSHFPSLP 58
           +T +P  S   PPS   S S++ SL+  P  + + P  S P PS        +S  PS  
Sbjct: 214 ATPNPSDSHPPPPSPPPSPSATNSLN-PPYPTSTTPARSKPSPSLNSPRGRRQSSSPSPA 390

Query: 59  RFPSKCR 65
           R P   R
Sbjct: 391 RSPRLAR 411


>AV422284 
          Length = 471

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 24/65 (36%), Positives = 33/65 (49%)
 Frame = +3

Query: 9   LHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKP 68
           +H  +++   P+++  SSSSTS HLSP           PPP+ S  PS   FP      P
Sbjct: 210 MHAAAAAKTSPAAAVLSSSSTSTHLSP----------QPPPADSMPPSFRLFPFS--PSP 353

Query: 69  PKPPR 73
           P+P R
Sbjct: 354 PRPTR 368



 Score = 27.3 bits (59), Expect = 1.5
 Identities = 14/36 (38%), Positives = 18/36 (49%)
 Frame = +1

Query: 48  PPSKSHFPSLPRFPSKCRHKPPKPPRLFMIIDPILL 83
           PPS S  PS    P   +H PP P  + ++  PI L
Sbjct: 181 PPSASLVPSTCTPPPPPKHHPPPPFSVLLLRRPICL 288



 Score = 25.8 bits (55), Expect = 4.4
 Identities = 11/26 (42%), Positives = 13/26 (49%)
 Frame = +1

Query: 33  LSPCSSHSLPQPSPPPPSKSHFPSLP 58
           LSP S+  +P    PPP   H P  P
Sbjct: 175 LSPPSASLVPSTCTPPPPPKHHPPPP 252


>BP043764 
          Length = 479

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 26/75 (34%), Positives = 34/75 (44%)
 Frame = +1

Query: 11  PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPK 70
           P S  S+PP   SSS++              P P PPP ++   P+ P  PS    KP  
Sbjct: 43  PTSHLSIPPKHHSSSAT--------------PPPFPPPSNRRRTPTTPPLPSAAPSKP-- 174

Query: 71  PPRLFMIIDPILLLN 85
           PP L  I++P   LN
Sbjct: 175 PPLLPPILNPHQNLN 219


>TC9115 similar to PIR|T00425|T00425 photolyase/blue-light receptor (PHR2)
           [imported] -                Arabidopsis thaliana
           {Arabidopsis thaliana;}, partial (55%)
          Length = 1018

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +1

Query: 18  PPSSSSSSSSSTSL---HLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           PPSS SS+ +S  L   + +P  S S P+P P P S S  P  PR P+     PP PP
Sbjct: 181 PPSSPSSNPNSHHLLPHNNNPTRSKSQPKPPPSPTSHSPPPPHPRRPNP-PSNPPSPP 351



 Score = 31.2 bits (69), Expect = 0.10
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -2

Query: 10  HPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKP- 68
           +P +  + P   +  S  STS   SP SS   P  S PPPS  H   L     +   +P 
Sbjct: 864 YPPTEKANPQHGTKCSPKSTSPPHSPPSS---PPQSSPPPSPHHAKPLCEHTQRQHQQPS 694

Query: 69  PKPP 72
           P PP
Sbjct: 693 PAPP 682



 Score = 30.4 bits (67), Expect = 0.18
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 7   STLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKS 52
           ST  P S  S PP SS   S   +  L   +     QPSP PP++S
Sbjct: 810 STSPPHSPPSSPPQSSPPPSPHHAKPLCEHTQRQHQQPSPAPPTQS 673



 Score = 27.3 bits (59), Expect = 1.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 10  HPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPS 62
           +P S   LP +++ + S S        +SHS P P P  P+    P  P  PS
Sbjct: 202 NPNSHHLLPHNNNPTRSKSQPKPPPSPTSHSPPPPHPRRPNPPSNPPSPPTPS 360



 Score = 26.9 bits (58), Expect = 2.0
 Identities = 24/64 (37%), Positives = 27/64 (41%), Gaps = 1/64 (1%)
 Frame = +1

Query: 10  HPLSSSSLP-PSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKP 68
           +P  S S P P  S +S S    H    +  S P PSPP PS    P  P  PS      
Sbjct: 238 NPTRSKSQPKPPPSPTSHSPPPPHPRRPNPPSNP-PSPPTPSAPLTP*APTAPSTL---- 402

Query: 69  PKPP 72
           P PP
Sbjct: 403 PTPP 414



 Score = 25.4 bits (54), Expect = 5.7
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +2

Query: 39  HSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPPRL 74
           H L QP PP PS    P  PR P + R  PP+  RL
Sbjct: 338 HPLRQP-PPRPSLLRPPPPPR-PFQRRRTPPRLHRL 439



 Score = 25.4 bits (54), Expect = 5.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 19 PSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPS 62
          P SSSSSSSS   +    S+  +P PS    +      LP  PS
Sbjct: 15 PHSSSSSSSSILQNPKMESNSQVPPPSSEKDNNVDQKPLPSEPS 146


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,244,829
Number of Sequences: 28460
Number of extensions: 159269
Number of successful extensions: 8376
Number of sequences better than 10.0: 1429
Number of HSP's better than 10.0 without gapping: 4032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6233
length of query: 175
length of database: 4,897,600
effective HSP length: 84
effective length of query: 91
effective length of database: 2,506,960
effective search space: 228133360
effective search space used: 228133360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)