BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0544.2
(141 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16882 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial ... 275 3e-75
TC19351 similar to UP|H2A_CICAR (O65759) Histone H2A, partial (98%) 219 1e-58
TC14795 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (97%) 211 3e-56
TC14794 homologue to UP|Q43312 (Q43312) Histone H2A, complete 203 1e-53
TC14446 homologue to UP|H2A_LYCES (P25469) Histone H2A, partial ... 182 1e-47
TC14448 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (95%) 182 2e-47
TC14447 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (86%) 180 7e-47
AV416115 165 2e-42
TC13456 homologue to UP|AAM50770 (AAM50770) LD21568p, partial (78%) 126 2e-30
TC11611 homologue to UP|O23628 (O23628) Histone H2A.F/Z (At3g545... 124 6e-30
AW719448 123 1e-29
TC17448 homologue to UP|O23628 (O23628) Histone H2A.F/Z (At3g545... 121 5e-29
TC12795 UP|Q9FMV5 (Q9FMV5) Transcription factor Hap5a-like prote... 31 0.092
TC18307 similar to UP|Q7XYK9 (Q7XYK9) Plastid protein SufE (Frag... 27 1.7
TC17381 similar to UP|AAQ93070 (AAQ93070) 3-ketoacyl-CoA thiolas... 27 1.7
TC10737 weakly similar to UP|E13B_WHEAT (P52409) Glucan endo-1,3... 26 2.3
TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 26 3.0
TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 26 3.0
TC14310 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (92%) 26 3.0
AI967840 26 3.0
>TC16882 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial (96%)
Length = 694
Score = 275 bits (702), Expect = 3e-75
Identities = 141/141 (100%), Positives = 141/141 (100%)
Frame = +3
Query: 1 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA
Sbjct: 90 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 269
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 270 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 449
Query: 121 TLLPKKAGKGKGEIGSASQEF 141
TLLPKKAGKGKGEIGSASQEF
Sbjct: 450 TLLPKKAGKGKGEIGSASQEF 512
>TC19351 similar to UP|H2A_CICAR (O65759) Histone H2A, partial (98%)
Length = 626
Score = 219 bits (558), Expect = 1e-58
Identities = 115/144 (79%), Positives = 125/144 (85%), Gaps = 3/144 (2%)
Frame = +2
Query: 1 MSSTGGNNT--KGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL 58
MSST T KGGRGKPK KSVSRS KAGLQFPVGR+AR+LKAG+Y++RVG+G+PVYL
Sbjct: 41 MSSTEAATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYSQRVGSGSPVYL 220
Query: 59 SAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNI 118
SAVLEYLAAEVLELAGNAARDNKK+RI+PRHIQLAVRNDEELSKL+G VTIA GGVLP I
Sbjct: 221 SAVLEYLAAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLMGHVTIAXGGVLPKI 400
Query: 119 HQTLLPKK-AGKGKGEIGSASQEF 141
H LLP K AG GKGEIGSA Q F
Sbjct: 401 HXNLLPXKVAGXGKGEIGSAXQXF 472
>TC14795 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (97%)
Length = 675
Score = 211 bits (538), Expect = 3e-56
Identities = 111/142 (78%), Positives = 119/142 (83%), Gaps = 4/142 (2%)
Frame = +3
Query: 3 STGGNNTKGGRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL 58
S+G ++T GRGK A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL
Sbjct: 60 SSGSSSTMAGRGKTLGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL 239
Query: 59 SAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNI 118
+AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNI
Sbjct: 240 AAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNI 419
Query: 119 HQTLLPKKAGKGKGEIGSASQE 140
H LLPKKAG KG +A +
Sbjct: 420 HNLLLPKKAGGSKGAAAAADDD 485
>TC14794 homologue to UP|Q43312 (Q43312) Histone H2A, complete
Length = 826
Score = 203 bits (516), Expect = 1e-53
Identities = 107/129 (82%), Positives = 112/129 (85%), Gaps = 4/129 (3%)
Frame = +3
Query: 7 NNTKGGRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 62
++T GRGK A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVL
Sbjct: 90 SSTMAGRGKTLGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVL 269
Query: 63 EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 122
EYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH L
Sbjct: 270 EYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLL 449
Query: 123 LPKKAGKGK 131
LPKKAG K
Sbjct: 450 LPKKAGGSK 476
>TC14446 homologue to UP|H2A_LYCES (P25469) Histone H2A, partial (94%)
Length = 744
Score = 182 bits (463), Expect = 1e-47
Identities = 94/129 (72%), Positives = 105/129 (80%), Gaps = 3/129 (2%)
Frame = +3
Query: 4 TGGNNTKGGRGKPKAA---KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
TGG + KG G+ K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAPVYL+A
Sbjct: 105 TGGKSKKGAGGRKAGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 284
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+
Sbjct: 285 VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 464
Query: 121 TLLPKKAGK 129
LLPKK +
Sbjct: 465 VLLPKKTAE 491
>TC14448 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (95%)
Length = 715
Score = 182 bits (461), Expect = 2e-47
Identities = 96/133 (72%), Positives = 106/133 (79%), Gaps = 4/133 (3%)
Frame = +3
Query: 1 MSSTGGNNTKGGRGKPKAA----KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPV 56
M ST K G KA KSVSRS KAGLQFPVGRI R+LK G+YA+RVG+GAPV
Sbjct: 72 MDSTATGKVKKGAAGRKAGGPKKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV 251
Query: 57 YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLP 116
YL+AVLEYLAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLP
Sbjct: 252 YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 431
Query: 117 NIHQTLLPKKAGK 129
NI+ LLPKK +
Sbjct: 432 NINPVLLPKKTAE 470
>TC14447 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (86%)
Length = 755
Score = 180 bits (457), Expect = 7e-47
Identities = 96/133 (72%), Positives = 107/133 (80%), Gaps = 4/133 (3%)
Frame = +2
Query: 1 MSSTGGNNTKGGRGK----PKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPV 56
M +T G KG G+ PK K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAPV
Sbjct: 68 MDTTTGKAKKGAGGRKIGGPKK-KPVSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV 244
Query: 57 YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLP 116
YL+AVLEYLAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLP
Sbjct: 245 YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 424
Query: 117 NIHQTLLPKKAGK 129
NI+ LLPKK +
Sbjct: 425 NINPVLLPKKTAE 463
>AV416115
Length = 430
Score = 165 bits (418), Expect = 2e-42
Identities = 84/121 (69%), Positives = 101/121 (83%), Gaps = 1/121 (0%)
Frame = +2
Query: 3 STGGNNTKGGRGKP-KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 61
+T TKG G+ + K+VS+S KAGLQFPVGR+ARFLK G+Y++R+G GAP+YL+AV
Sbjct: 68 TTTTTTTKGAGGRRGQRKKAVSKSSKAGLQFPVGRVARFLKKGRYSQRLGTGAPIYLAAV 247
Query: 62 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 121
LEYLAAEVLELAGNAARDNKKNRI PRH+ LAVRND+EL +LL VTIA+GGVLPNI+
Sbjct: 248 LEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGRLLQGVTIASGGVLPNINPV 427
Query: 122 L 122
L
Sbjct: 428 L 430
>TC13456 homologue to UP|AAM50770 (AAM50770) LD21568p, partial (78%)
Length = 544
Score = 126 bits (316), Expect = 2e-30
Identities = 71/123 (57%), Positives = 88/123 (70%), Gaps = 1/123 (0%)
Frame = +3
Query: 6 GNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEY 64
G + K K K+VSRS +AGLQFPVGRI R LK+ A RVGA A VY +A+LEY
Sbjct: 93 GKTPASAKDKDKK-KAVSRSSRAGLQFPVGRIHRLLKSRATASGRVGATAAVYAAAILEY 269
Query: 65 LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP 124
L AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+
Sbjct: 270 LTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLIN 446
Query: 125 KKA 127
K +
Sbjct: 447 KSS 455
>TC11611 homologue to UP|O23628 (O23628) Histone H2A.F/Z (At3g54560),
partial (95%)
Length = 736
Score = 124 bits (311), Expect = 6e-30
Identities = 73/129 (56%), Positives = 91/129 (69%), Gaps = 13/129 (10%)
Frame = +2
Query: 10 KGGRG-------KPKAAKS-----VSRSQKAGLQFPVGRIARFLKAGKYAE-RVGAGAPV 56
KGG+G K KA +S VSRS +AG+QFPVGRI R LK +A RVG A V
Sbjct: 35 KGGKGLLAAKTTKDKAKESDKKRPVSRSSRAGIQFPVGRIHRQLKQRAHAHGRVGGTAAV 214
Query: 57 YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLP 116
YL+++LEYL AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P
Sbjct: 215 YLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIP 391
Query: 117 NIHQTLLPK 125
+IH++L+ K
Sbjct: 392 HIHKSLINK 418
>AW719448
Length = 552
Score = 123 bits (309), Expect = 1e-29
Identities = 68/114 (59%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Frame = +1
Query: 15 KPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELA 73
K K SRS +AGLQFPVGRI R LK A RVGA A VY +A+LEYL AEVLELA
Sbjct: 52 KDNKKKPTSRSSRAGLQFPVGRIHRLLKTRVSANGRVGATAAVYTAAILEYLTAEVLELA 231
Query: 74 GNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
GNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K +
Sbjct: 232 GNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 390
>TC17448 homologue to UP|O23628 (O23628) Histone H2A.F/Z (At3g54560),
partial (88%)
Length = 597
Score = 121 bits (303), Expect = 5e-29
Identities = 66/109 (60%), Positives = 82/109 (74%), Gaps = 1/109 (0%)
Frame = +1
Query: 20 KSVSRSQKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAAR 78
+ SRS +AG+QFPVGRI R LK A RVGA A VYL+++LEYL AEVLELAGNA++
Sbjct: 31 RPTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASK 210
Query: 79 DNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K A
Sbjct: 211 DLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTA 354
>TC12795 UP|Q9FMV5 (Q9FMV5) Transcription factor Hap5a-like protein, partial
(40%)
Length = 405
Score = 30.8 bits (68), Expect = 0.092
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 31 QFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHI 90
Q P+ RI + +KA + + A AP+ + E E+ + A +NK+ + I
Sbjct: 197 QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 376
Query: 91 QLAV 94
A+
Sbjct: 377 AAAI 388
>TC18307 similar to UP|Q7XYK9 (Q7XYK9) Plastid protein SufE (Fragment),
partial (9%)
Length = 773
Score = 26.6 bits (57), Expect = 1.7
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 33 PVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAG 74
P+GR +RFL A + A + AG V + V+ + LE AG
Sbjct: 289 PIGRASRFLGASEEALQWVAGKWVMMVMVMMMMLMVWLEFAG 164
>TC17381 similar to UP|AAQ93070 (AAQ93070) 3-ketoacyl-CoA thiolase ,
partial (39%)
Length = 547
Score = 26.6 bits (57), Expect = 1.7
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 20 KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAG 53
++V+R +GLQ V +A ++KAG Y +GAG
Sbjct: 420 RTVNRQCSSGLQ-AVADVAAYIKAGFYDIGIGAG 518
>TC10737 weakly similar to UP|E13B_WHEAT (P52409) Glucan
endo-1,3-beta-glucosidase precursor ((1->3)-beta-glucan
endohydrolase) ((1->3)-beta-glucanase)
(Beta-1,3-endoglucanase) , partial (15%)
Length = 607
Score = 26.2 bits (56), Expect = 2.3
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 113 GVLPNIHQTLLP 124
GVLPN+HQT LP
Sbjct: 171 GVLPNLHQTKLP 206
>TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (93%)
Length = 682
Score = 25.8 bits (55), Expect = 3.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 57 YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 95
+++ + E LA E LA R NKK I R IQ AVR
Sbjct: 334 FINDIFEKLAQESSRLA----RYNKKPTITSREIQTAVR 438
>TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (96%)
Length = 764
Score = 25.8 bits (55), Expect = 3.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 57 YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 95
+++ + E LA E LA R NKK I R IQ AVR
Sbjct: 342 FINDIFEKLAQESSRLA----RYNKKPTITSREIQTAVR 446
>TC14310 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (92%)
Length = 502
Score = 25.8 bits (55), Expect = 3.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 57 YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 95
+++ + E LA E LA R NKK I R IQ AVR
Sbjct: 294 FINDIFEKLAQESSRLA----RYNKKPTITSREIQTAVR 398
>AI967840
Length = 393
Score = 25.8 bits (55), Expect = 3.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 57 YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 95
+++ + E LA E LA R NKK I R IQ AVR
Sbjct: 280 FINDIFEKLAQESSRLA----RYNKKPTITSREIQTAVR 384
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.132 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,645,127
Number of Sequences: 28460
Number of extensions: 15815
Number of successful extensions: 81
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of query: 141
length of database: 4,897,600
effective HSP length: 81
effective length of query: 60
effective length of database: 2,592,340
effective search space: 155540400
effective search space used: 155540400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0544.2