BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0544.11
(200 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10834 similar to GB|AAM98099.1|22655016|AY139793 At1g05070/T7A... 100 2e-22
TC12499 66 5e-12
TC10632 28 0.82
TC14650 similar to UP|IF3A_TOBAC (Q40554) Eukaryotic translation... 28 1.1
AW719373 28 1.1
BP051993 28 1.4
TC18720 weakly similar to UP|SCWA_YEAST (Q04951) Probable family... 28 1.4
TC8312 similar to UP|Q8S901 (Q8S901) Syringolide-induced protein... 27 1.8
BP052581 27 3.1
TC8707 weakly similar to UP|Q9FN67 (Q9FN67) Gb|AAD56319.1, parti... 27 3.1
TC14073 homologue to UP|AAQ08403 (AAQ08403) Methionine synthase,... 26 4.1
TC8047 similar to UP|Q9ASV9 (Q9ASV9) At1g53210/F12M16_12, partia... 26 5.3
TC8104 homologue to UP|WR65_ARATH (Q9LP56) Probable WRKY transcr... 26 5.3
BP044185 26 5.3
TC12158 homologue to UP|143A_SOYBN (Q96450) 14-3-3-like protein ... 26 5.3
CB827018 26 5.3
TC11999 similar to UP|ZIP4_ARATH (O04089) Zinc transporter 4, ch... 25 7.0
BP055866 25 7.0
TC11509 similar to UP|Q80TY1 (Q80TY1) MKIAA0553 protein (Fragmen... 25 7.0
BP050172 25 7.0
>TC10834 similar to GB|AAM98099.1|22655016|AY139793 At1g05070/T7A14_6
{Arabidopsis thaliana;}, partial (62%)
Length = 569
Score = 100 bits (249), Expect = 2e-22
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 9/124 (7%)
Frame = +3
Query: 78 PCDCYCSSAE---------SPPDTFDCGKHDPVMNEEMNKDLLTMLSEELNLQRIVTNET 128
PC C CSS + S DC K DP + + K+ +LSEEL L+ V E
Sbjct: 54 PCLCDCSSQQPILSIPQGLSNTSFGDCAKPDPEVTGDTEKNFAELLSEELKLRENVALEN 233
Query: 129 LEQTDRLVMNARNASSHYQMETEKCNVAMETCEEARERAEAELIEEHRVTALWENRAREY 188
+ D ++ A+ +S YQ E +KCN METCE ARE+AE L+ + +++ALWE RAR+
Sbjct: 234 QRRADMALLEAKKIASQYQKEADKCNSGMETCEGAREKAELALVAQKKLSALWELRARQK 413
Query: 189 GWKD 192
GWK+
Sbjct: 414 GWKE 425
>TC12499
Length = 424
Score = 65.9 bits (159), Expect = 5e-12
Identities = 43/127 (33%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Frame = +2
Query: 50 IVQVIVEFGPLSRWRLKES----ASTESPCHHPCDCYC----SSAESPP-----DTFDCG 96
+V + GP WR K+ AS P PC C C S + P DCG
Sbjct: 53 VVSALGVCGPALYWRFKKGIAIRASNSCP---PCLCDCPPPLSLFQVAPGLVNLSVSDCG 223
Query: 97 KHDPVMNEEMNKDLLTMLSEELNLQRIVTNETLEQTDRLVMNARNASSHYQMETEKCNVA 156
+DP + EEM K + +L+EEL LQ V + A+ + YQ E +KC A
Sbjct: 224 GNDPDLKEEMEKQFVDLLTEELKLQESVAEAHSRHMNITFAEAKRVGAQYQREADKCIAA 403
Query: 157 METCEEA 163
ETCE+A
Sbjct: 404 AETCEQA 424
>TC10632
Length = 966
Score = 28.5 bits (62), Expect = 0.82
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 13 TDSHPFISEHT--ASSQSPRSSNGSVSVDVHITC 44
T +H + HT S +SPR SN + V+ITC
Sbjct: 485 TTNHSTVLHHTFPKSGRSPRYSNSACQTGVYITC 586
>TC14650 similar to UP|IF3A_TOBAC (Q40554) Eukaryotic translation initiation
factor 3 subunit 10 (eIF-3 theta) (Eukaryotic
translation initiation factor 3 large subunit) (eIF3a)
(PNLA-35), partial (11%)
Length = 978
Score = 28.1 bits (61), Expect = 1.1
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = -3
Query: 75 CHHPCDCYCSSAESPPD 91
CHHP CYC S + P+
Sbjct: 553 CHHPAGCYCYSNDLFPE 503
>AW719373
Length = 566
Score = 28.1 bits (61), Expect = 1.1
Identities = 20/70 (28%), Positives = 29/70 (40%), Gaps = 10/70 (14%)
Frame = +3
Query: 55 VEFGPLSRWRLKESASTESPCHHPCDCYCSSAESPPDTFDCGKHDPV----------MNE 104
V F PLSR + + S++ C H +C S ++ K P NE
Sbjct: 231 VSFSPLSRLKE*DKCSSQQWCQHIIECLLSIKHITRKAWNMSKQFPHSLYLQYSII*KNE 410
Query: 105 EMNKDLLTML 114
E + LLTM+
Sbjct: 411 E*DSRLLTMI 440
>BP051993
Length = 548
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/74 (24%), Positives = 30/74 (40%)
Frame = -2
Query: 72 ESPCHHPCDCYCSSAESPPDTFDCGKHDPVMNEEMNKDLLTMLSEELNLQRIVTNETLEQ 131
++P C S A PP TFD V + + + S+ +L+ N+ +
Sbjct: 349 KNPSEEQPPCLSSRAAPPPSTFDTSS---VTESGNSTESASACSDSSSLKNSSENDISHK 179
Query: 132 TDRLVMNARNASSH 145
T + RN S+H
Sbjct: 178 TKATLTVIRNPSNH 137
>TC18720 weakly similar to UP|SCWA_YEAST (Q04951) Probable family 17
glucosidase SCW10 precursor (Soluble cell wall protein
10) , partial (7%)
Length = 871
Score = 27.7 bits (60), Expect = 1.4
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 61 SRWRLKESASTESPCHHPCDCYCSSAESPPDTFDCGKHDP 100
SRWR +AS P HHP A SPP C P
Sbjct: 135 SRWRQPLAAS---PYHHPDAAPPQDASSPPARPPCSSSQP 25
>TC8312 similar to UP|Q8S901 (Q8S901) Syringolide-induced protein 14-1-1,
partial (46%)
Length = 1358
Score = 27.3 bits (59), Expect = 1.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 16 HPFISEHTASSQSPRSSNGS 35
HP I++HT +SQ R+SN +
Sbjct: 55 HPIITQHTTTSQIQRASNSN 114
>BP052581
Length = 563
Score = 26.6 bits (57), Expect = 3.1
Identities = 11/40 (27%), Positives = 20/40 (49%)
Frame = +1
Query: 65 LKESASTESPCHHPCDCYCSSAESPPDTFDCGKHDPVMNE 104
LK + P H PC C S+++ D+ D + D ++ +
Sbjct: 148 LKRPSLLPFPSHPPCRCLSSASDDKNDSSDNRRWDSLLQD 267
>TC8707 weakly similar to UP|Q9FN67 (Q9FN67) Gb|AAD56319.1, partial (43%)
Length = 1062
Score = 26.6 bits (57), Expect = 3.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 41 HITCESPSDIVQVIVEFGPLSRWRLKESASTESPCHHPCDCYCSSAES 88
H+ C SPS P+S T++P HHPC C + +S
Sbjct: 631 HLPCPSPSPSNSS*RSSPPISLPCFPSKPLTKAPHHHPC---CKTLDS 497
>TC14073 homologue to UP|AAQ08403 (AAQ08403) Methionine synthase, complete
Length = 2757
Score = 26.2 bits (56), Expect = 4.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -1
Query: 166 RAEAELIEEHRVTALWENRAREYGWKDKRRTRLRR 200
R+ + HR + WE R RE+ W+ R+
Sbjct: 462 RSRCQSQSRHRSSRTWEERHREWRWRQAHHHSKRK 358
>TC8047 similar to UP|Q9ASV9 (Q9ASV9) At1g53210/F12M16_12, partial (31%)
Length = 1144
Score = 25.8 bits (55), Expect = 5.3
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = -3
Query: 20 SEHTASSQSPRSSNGSVSVDVHITCESPS 48
S A+ +P SSN + V+VH+ +PS
Sbjct: 305 SAKAAAIMAPSSSNSTALVEVHLAFSTPS 219
>TC8104 homologue to UP|WR65_ARATH (Q9LP56) Probable WRKY transcription
factor 65 (WRKY DNA-binding protein 65), partial (12%)
Length = 604
Score = 25.8 bits (55), Expect = 5.3
Identities = 10/21 (47%), Positives = 12/21 (56%), Gaps = 3/21 (14%)
Frame = -1
Query: 75 CHHPCDCYCSS---AESPPDT 92
CHH C+CS A PP+T
Sbjct: 262 CHHTVSCWCSEYSFAGKPPNT 200
>BP044185
Length = 575
Score = 25.8 bits (55), Expect = 5.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3
Query: 76 HHPCDCYCSS 85
HH CDCYC++
Sbjct: 447 HHLCDCYCNT 418
>TC12158 homologue to UP|143A_SOYBN (Q96450) 14-3-3-like protein A (SGF14A),
partial (54%)
Length = 562
Score = 25.8 bits (55), Expect = 5.3
Identities = 12/34 (35%), Positives = 15/34 (43%)
Frame = -3
Query: 59 PLSRWRLKESASTESPCHHPCDCYCSSAESPPDT 92
P ++WR S SP H C S+ PP T
Sbjct: 359 PSAQWRR*SSRKPSSPQSHSCTPQRVSSSPPPST 258
>CB827018
Length = 353
Score = 25.8 bits (55), Expect = 5.3
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 57 FGPLSRWRLKESASTESPCHHPCDCY 82
FGP ES S SPC H C CY
Sbjct: 128 FGPFG-----ESDSFLSPCGHVCCCY 190
>TC11999 similar to UP|ZIP4_ARATH (O04089) Zinc transporter 4, chloroplast
precursor (ZRT/IRT-like protein 4), partial (31%)
Length = 516
Score = 25.4 bits (54), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 73 SPCHHPCDCYCSSAESPP 90
SPC H +C+ S E+PP
Sbjct: 223 SPCRHGRNCHPSHRETPP 276
>BP055866
Length = 541
Score = 25.4 bits (54), Expect = 7.0
Identities = 11/24 (45%), Positives = 12/24 (49%), Gaps = 7/24 (29%)
Frame = +2
Query: 74 PCHHPCDCYC-------SSAESPP 90
PC PC C C S +ESPP
Sbjct: 464 PCQGPCGCSC*QQRARASRSESPP 535
>TC11509 similar to UP|Q80TY1 (Q80TY1) MKIAA0553 protein (Fragment), partial
(3%)
Length = 624
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/45 (28%), Positives = 21/45 (45%)
Frame = +3
Query: 78 PCDCYCSSAESPPDTFDCGKHDPVMNEEMNKDLLTMLSEELNLQR 122
PCDC C A P CG + N +++ + +L+L+R
Sbjct: 261 PCDCNCHLATIPLPPSPCGVCWRIWNLNLDETESDPVDLDLDLRR 395
>BP050172
Length = 594
Score = 25.4 bits (54), Expect = 7.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 7 SIHVNLTDSHPFISEHTA 24
S+ N DSHP++S HT+
Sbjct: 64 SLSYNRIDSHPYLSPHTS 117
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.128 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,063,674
Number of Sequences: 28460
Number of extensions: 58607
Number of successful extensions: 441
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of query: 200
length of database: 4,897,600
effective HSP length: 86
effective length of query: 114
effective length of database: 2,450,040
effective search space: 279304560
effective search space used: 279304560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0544.11