BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0544.10
(306 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18793 similar to UP|O04035 (O04035) F7G19.18 protein, partial ... 271 1e-73
TC11399 171 2e-43
TC17076 122 6e-29
TC10071 65 2e-11
TC19863 similar to UP|Q8LE79 (Q8LE79) PRIB5 protein, partial (29%) 35 0.021
BP058026 32 0.18
BP082711 30 0.39
AV415922 30 0.67
TC15031 weakly similar to UP|Q69107 (Q69107) LAT protein, partia... 29 0.87
TC19734 29 0.87
TC15714 weakly similar to UP|Q9LU96 (Q9LU96) Genomic DNA, chromo... 29 1.1
TC10795 similar to UP|Q9SGZ6 (Q9SGZ6) F28K19.26, partial (18%) 29 1.1
AV765211 29 1.1
BP049974 28 1.9
AV774105 28 2.5
TC16594 similar to GB|AAG38144.1|21700765|AY004240 phosphoglycer... 28 2.5
TC8944 similar to UP|Q9SIR2 (Q9SIR2) At2g25310 protein, partial ... 28 2.5
AV774477 27 3.3
BP029370 27 3.3
TC13531 similar to UP|O43989 (O43989) Homeobox-containing protei... 27 5.6
>TC18793 similar to UP|O04035 (O04035) F7G19.18 protein, partial (54%)
Length = 718
Score = 271 bits (693), Expect = 1e-73
Identities = 133/189 (70%), Positives = 159/189 (83%), Gaps = 4/189 (2%)
Frame = +2
Query: 12 NNNHHQQQIPNQNN---HKPSVLPKRIILVRHGESQGNLDPSAYTTTPDHKISLTPQGIT 68
N +Q+ P+ +N K VLPKRIIL+RHGESQGNLD SAYTT P+H I LTPQGI+
Sbjct: 152 NQ*KRKQRKPSNSNTRRKKRGVLPKRIILMRHGESQGNLDTSAYTTKPNHSIQLTPQGIS 331
Query: 69 QARIAGARIRHVISSTS-STDWRVYFYVSPYARTRSTLREIGRSFSKHRLLGVREECRIR 127
QAR AG R+R V+++ S DWRV FYVSPYARTRSTLRE+GRSFSK R++GVREE RIR
Sbjct: 332 QARRAGNRLRRVMAADGCSPDWRVNFYVSPYARTRSTLREVGRSFSKKRVIGVREESRIR 511
Query: 128 EQDFGNFQVQERINALKETRQRFGRFFFRFPDGESAADVFDRVSSFLESLWRDIDMNRLN 187
EQDFGNFQV+ER+ +K+TR+RFGRFF+RFP+GESAADV+DR+S F E+LWRDID+NRL+
Sbjct: 512 EQDFGNFQVEERMKIIKQTRERFGRFFYRFPEGESAADVYDRISGFFEALWRDIDLNRLH 691
Query: 188 HDPSNDLNL 196
HDPSNDLNL
Sbjct: 692 HDPSNDLNL 718
>TC11399
Length = 540
Score = 171 bits (432), Expect = 2e-43
Identities = 76/81 (93%), Positives = 78/81 (95%)
Frame = +2
Query: 226 FGNGEFRVMQLGSGGEYSLAVHHTDREMHEWGLSPDMIADQKWRAHATKGAWHDQGPLSL 285
FGNGEFRVM LGSGGEYS AVHHTDREMHEWGLSPDMIADQKWRAHATKGAWHDQGPLSL
Sbjct: 2 FGNGEFRVMHLGSGGEYSFAVHHTDREMHEWGLSPDMIADQKWRAHATKGAWHDQGPLSL 181
Query: 286 DTFFDHLHDSDNEDNDDQTNS 306
DTFFDHLHDSDNED+DD T+S
Sbjct: 182 DTFFDHLHDSDNEDHDDPTHS 244
>TC17076
Length = 644
Score = 122 bits (307), Expect = 6e-29
Identities = 58/131 (44%), Positives = 89/131 (67%), Gaps = 2/131 (1%)
Frame = +3
Query: 166 VFDRVSSFLESLWRDIDMNRLNH--DPSNDLNLIIVSHGLASRVFLMKWFKWTVEQFDLL 223
V+DR++ F E+L DI++ R + D+NL+IVSHGL RVFLM+W+KWTVEQF+ L
Sbjct: 3 VYDRITGFRETLRADINIGRYQPPGEEKMDINLVIVSHGLTLRVFLMRWYKWTVEQFEGL 182
Query: 224 NNFGNGEFRVMQLGSGGEYSLAVHHTDREMHEWGLSPDMIADQKWRAHATKGAWHDQGPL 283
+N N E VM+ G GG YSL +HH ++E+ +GL+ +M+ +Q+W HA + P+
Sbjct: 183 HNLRNAEMLVMEKGYGGRYSLLMHHDEQELRRFGLTDEMLIEQEWHKHARPADLNYDCPM 362
Query: 284 SLDTFFDHLHD 294
+++FF HL++
Sbjct: 363 -VNSFFPHLNE 392
>TC10071
Length = 530
Score = 64.7 bits (156), Expect = 2e-11
Identities = 34/74 (45%), Positives = 42/74 (55%)
Frame = +1
Query: 4 HNNNDNDDNNNHHQQQIPNQNNHKPSVLPKRIILVRHGESQGNLDPSAYTTTPDHKISLT 63
HN D N+ + P +N P+RIILVRHGES+GN+D + YT PD KI LT
Sbjct: 307 HNQTDPIRLTNNGASRFPEKNPLLNPPRPRRIILVRHGESEGNVDETVYTRVPDPKIGLT 486
Query: 64 PQGITQARIAGARI 77
+G QA G RI
Sbjct: 487 DRGKAQAEECGYRI 528
>TC19863 similar to UP|Q8LE79 (Q8LE79) PRIB5 protein, partial (29%)
Length = 574
Score = 34.7 bits (78), Expect = 0.021
Identities = 27/94 (28%), Positives = 42/94 (43%), Gaps = 5/94 (5%)
Frame = +1
Query: 25 NHKPS----VLPKRIILVRHGESQGNLDPSAYTTTP-DHKISLTPQGITQARIAGARIRH 79
NH P VL + ++++RHG+ N DPS +T P L G +A G R+R
Sbjct: 196 NHNPENKRLVLYQNVVVMRHGDRIDNFDPSWVSTAPRPWDPPLVQAGKVRAFQTGNRLRQ 375
Query: 80 VISSTSSTDWRVYFYVSPYARTRSTLREIGRSFS 113
+ + + +VSP+ R T E + S
Sbjct: 376 GVGFSINR-----VFVSPFLRCVQTAAEAAIAIS 462
>BP058026
Length = 389
Score = 31.6 bits (70), Expect = 0.18
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 1 MHNHNNNDNDDNNNHHQQQIPNQNNH 26
++N+NNN+N++NNN++ N NN+
Sbjct: 6 INNNNNNNNNNNNNNNNNNNNNNNNN 83
Score = 28.9 bits (63), Expect = 1.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 4 HNNNDNDDNNNHHQQQIPNQNNHKPSVL 31
+NNN+N++NNN++ N NN+ ++
Sbjct: 9 NNNNNNNNNNNNNNNNNNNNNNNNNDLI 92
Score = 28.9 bits (63), Expect = 1.1
Identities = 10/24 (41%), Positives = 18/24 (74%)
Frame = +3
Query: 2 HNHNNNDNDDNNNHHQQQIPNQNN 25
+N+NNN+N++NNN++ N N+
Sbjct: 15 NNNNNNNNNNNNNNNNNNNNNNND 86
Score = 26.6 bits (57), Expect = 5.6
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = +3
Query: 2 HNHNNNDNDDNNNHHQQQI 20
+N+NNN+N++NNN++ +
Sbjct: 33 NNNNNNNNNNNNNNNNNDL 89
Score = 26.6 bits (57), Expect = 5.6
Identities = 9/19 (47%), Positives = 16/19 (83%)
Frame = +3
Query: 2 HNHNNNDNDDNNNHHQQQI 20
+N+NNN+N++NNN++ I
Sbjct: 36 NNNNNNNNNNNNNNNNDLI 92
>BP082711
Length = 379
Score = 30.4 bits (67), Expect = 0.39
Identities = 14/39 (35%), Positives = 25/39 (63%)
Frame = +3
Query: 2 HNHNNNDNDDNNNHHQQQIPNQNNHKPSVLPKRIILVRH 40
+N+NNN+N++NNN++ N NN S +++L+ H
Sbjct: 174 YNNNNNNNNNNNNNNN----NNNNKNIS*DSPKLLLMSH 278
>AV415922
Length = 422
Score = 29.6 bits (65), Expect = 0.67
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 3 NHNNNDNDDNNNHHQQQIPNQNNHKPSVLPKR 34
N NN+DN++NNN++ N NN+ P + +R
Sbjct: 169 NTNNDDNNNNNNNNNNN--NNNNNLPILSDRR 258
Score = 29.6 bits (65), Expect = 0.67
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 6 NNDNDDNNNHHQQQIPNQNNHKPSVLPKR 34
N +NDDNNN++ N NN+ +L R
Sbjct: 169 NTNNDDNNNNNNNNNNNNNNNNLPILSDR 255
Score = 26.2 bits (56), Expect = 7.4
Identities = 9/19 (47%), Positives = 16/19 (83%)
Frame = +1
Query: 2 HNHNNNDNDDNNNHHQQQI 20
+N+NNN+N++NNN++ I
Sbjct: 187 NNNNNNNNNNNNNNNNLPI 243
>TC15031 weakly similar to UP|Q69107 (Q69107) LAT protein, partial (27%)
Length = 997
Score = 29.3 bits (64), Expect = 0.87
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = -2
Query: 39 RHGESQGNLDPSAYTTTPDHKISLT--PQGITQARI--AGARIRHVISSTSSTDWRVYFY 94
R+G +Q PS T T P+G + RI R RHV+ + + V+F
Sbjct: 978 RNGYAQSTTTPSPRITEACRNAPGTRSPRGSRKRRIP*TATRGRHVMLVMARASFGVFFL 799
Query: 95 VSPYARTRSTLREIGRSFSKHRLLGV 120
+ R RS R G + +++ +
Sbjct: 798 IDALRRKRSVTRNAGSKRPRFKMMWI 721
>TC19734
Length = 516
Score = 29.3 bits (64), Expect = 0.87
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Frame = +2
Query: 250 DREMHEWGLSPDMIADQK-----------WRAHATKGAWHDQGP-LSLDTFFDHLH 293
D+++H GLS + +K WR T+ W DQ P ++T HLH
Sbjct: 101 DQDLHVSGLSFHLWMKRKKL*RTGPREGEWRGSRTEAVWEDQHP*TPIETIVKHLH 268
>TC15714 weakly similar to UP|Q9LU96 (Q9LU96) Genomic DNA, chromosome 3, P1
clone: MPE11, partial (26%)
Length = 1157
Score = 28.9 bits (63), Expect = 1.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 4 HNNNDNDDNNNHHQQQIPNQNNHKPSVLP 32
HN + N N+NHH + PN +KP+ P
Sbjct: 846 HNASTNSHNHNHHPRN-PNPRRNKPTRTP 763
>TC10795 similar to UP|Q9SGZ6 (Q9SGZ6) F28K19.26, partial (18%)
Length = 731
Score = 28.9 bits (63), Expect = 1.1
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +2
Query: 35 IILVRHGESQGNLDPSAYTTTPDHKISLTPQGITQARIAGARIRHV 80
+IL+RHGES N + + +T D + L+ +GI +A AG RI +
Sbjct: 434 LILIRHGESLWN-EKNLFTGCVD--VPLSKKGIDEAIEAGKRISSI 562
>AV765211
Length = 408
Score = 28.9 bits (63), Expect = 1.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -3
Query: 8 DNDDNNNHHQQQIPNQNNHKPSVLPKRIILVRHG 41
+N +N HQ+ +P+++ P V P+ + L++HG
Sbjct: 406 ENPFSNQKHQETLPSKSVAFPRVSPQLLELIQHG 305
>BP049974
Length = 592
Score = 28.1 bits (61), Expect = 1.9
Identities = 11/26 (42%), Positives = 18/26 (68%), Gaps = 2/26 (7%)
Frame = +1
Query: 270 AHATKGAWHDQGPLSL--DTFFDHLH 293
+H++ +WH GP+SL + FDH+H
Sbjct: 418 SHSSSTSWHRNGPVSLWRLSHFDHVH 495
>AV774105
Length = 487
Score = 27.7 bits (60), Expect = 2.5
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 10 DDNNNHHQQQIP-NQNNHKPSVLPKRIILVRHGESQGNLDPSAYTTTPDHKISLTPQ 65
DD+NNH++Q++P +N +P + R +S ++ P +Y P + PQ
Sbjct: 120 DDSNNHNEQKLPLLKNMEEPEKNLIHKAMSRTFKSTASIWPISYQQEPSFLSNFYPQ 290
>TC16594 similar to GB|AAG38144.1|21700765|AY004240 phosphoglycerate
mutase-like protein {Glycine max;} , partial (56%)
Length = 578
Score = 27.7 bits (60), Expect = 2.5
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Frame = +1
Query: 33 KRIILVRHGES----QGNLDPSAYTTTPDHKISLTPQGITQARIAGARIRHVISSTSSTD 88
K + LVRH + G DP AY + SLTP G Q +R + S+ +
Sbjct: 124 KTLHLVRHAQGFHNVAGEKDPEAYLSYDYLDASLTPLGWNQV----DNLREHVKSSGLSK 291
Query: 89 WRVYFYVSPYARTRST 104
SP RT T
Sbjct: 292 GIELVITSPLTRTMQT 339
>TC8944 similar to UP|Q9SIR2 (Q9SIR2) At2g25310 protein, partial (69%)
Length = 1150
Score = 27.7 bits (60), Expect = 2.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 5 NNNDNDDNNNHHQQQIPNQNNHKPSVLPKRIILVR 39
+ DN+ + +HHQ N H LP II+ R
Sbjct: 600 HEEDNNHHKSHHQTHWTFHNGHNREWLPNLIIMFR 496
>AV774477
Length = 469
Score = 27.3 bits (59), Expect = 3.3
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +2
Query: 227 GNGEFRVMQLGSGGEYSLAVHHTDREMHEWGLSPDMIADQKWRAHATKGAWHD 279
GNG + LG GG Y+ H W P + W + KG+W D
Sbjct: 299 GNG---TLHLGQGG-YAGQCREKRAHYHRWIQ*PGLGGGGGWGPRSAKGSWRD 445
>BP029370
Length = 364
Score = 27.3 bits (59), Expect = 3.3
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 1 MHNHNNNDNDDNNNHHQQQI 20
++N+NNN+N +NNN++ I
Sbjct: 169 IYNNNNNNNKNNNNNNNNSI 228
Score = 26.6 bits (57), Expect = 5.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 2 HNHNNNDNDDNNNHHQQQIPNQNNH 26
+N+NNN+ ++NNN++ I NH
Sbjct: 175 NNNNNNNKNNNNNNNNSII*KITNH 249
>TC13531 similar to UP|O43989 (O43989) Homeobox-containing protein
(Fragment), partial (5%)
Length = 434
Score = 26.6 bits (57), Expect = 5.6
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1
Query: 3 NHNNNDNDDNNN 14
N+NNNDN++NNN
Sbjct: 130 NNNNNDNNNNNN 165
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,755,346
Number of Sequences: 28460
Number of extensions: 81224
Number of successful extensions: 760
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of query: 306
length of database: 4,897,600
effective HSP length: 90
effective length of query: 216
effective length of database: 2,336,200
effective search space: 504619200
effective search space used: 504619200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0544.10