TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0544.1
         (309 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV412299                                                              211  1e-55
TC11214                                                                44  5e-05
CB829372                                                               28  2.0
TC9217 similar to UP|Q9XQC7 (Q9XQC7) GrpE protein homolog, parti...    27  5.7
AW720015                                                               26  7.5
AV764731                                                               26  9.8
AU089302                                                               26  9.8
TC12642 weakly similar to UP|Q7X9A9 (Q7X9A9) Beta-primeverosidas...    26  9.8

>AV412299 
          Length = 411

 Score =  211 bits (537), Expect = 1e-55
 Identities = 106/106 (100%), Positives = 106/106 (100%)
 Frame = +2

Query: 1   MGYLALMHCVGVTSCPGQLKLVRVRIQCSTTNVGVSRRQLLEKLDKELLKGDDRAALALV 60
           MGYLALMHCVGVTSCPGQLKLVRVRIQCSTTNVGVSRRQLLEKLDKELLKGDDRAALALV
Sbjct: 92  MGYLALMHCVGVTSCPGQLKLVRVRIQCSTTNVGVSRRQLLEKLDKELLKGDDRAALALV 271

Query: 61  KDLQGKPDGLRCFGAARQVPQRLYTLDELKLNGIEAESLLSPVDST 106
           KDLQGKPDGLRCFGAARQVPQRLYTLDELKLNGIEAESLLSPVDST
Sbjct: 272 KDLQGKPDGLRCFGAARQVPQRLYTLDELKLNGIEAESLLSPVDST 409


>TC11214 
          Length = 538

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
 Frame = +3

Query: 186 FLIAYLVGILPKGYTLSSLDALKKDGSLNVQAGSAFVDFEFLEEVNAGKVSAKTLNKFSC 245
           FLIAYL+G+   GY   SLD  K+  +L        +D    + + +G+++AK +++ + 
Sbjct: 3   FLIAYLLGVPILGY---SLDIGKEHVNL--------IDQRLEKLIYSGQLNAKEIDRLAV 149

Query: 246 IALAGVCTEYLIYGFSEGGLDDIRKLDSLLSGLGFTQKKVDSQ--VRWSVLNTVLLLRR- 302
           +++AG+  E LIY    G   D+  L   ++       K   Q   RW+V+    LL+  
Sbjct: 150 VSMAGLAAEGLIYDKVIGQSADLFTLQRFINRTKPQLSKDQQQNLTRWAVMFAASLLKNN 329

Query: 303 ---HEAARA 308
              HEA  A
Sbjct: 330 KESHEALMA 356


>CB829372 
          Length = 486

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 16/72 (22%), Positives = 28/72 (38%)
 Frame = +1

Query: 177 RVIQHEAGHFLIAYLVGILPKGYTLSSLDALKKDGSLNVQAGSAFVDFEFLEEVNAGKVS 236
           R   H+ GH + A  +     G+ +  LD+L  +   ++     F +FE       GK+ 
Sbjct: 271 RYCNHDVGHAIAAVAMAAASLGWEVKLLDSLGCEELKSLMGLHVFPEFEIPSRAVKGKIP 450

Query: 237 AKTLNKFSCIAL 248
                   C+ L
Sbjct: 451 EIEFEHPDCVML 486


>TC9217 similar to UP|Q9XQC7 (Q9XQC7) GrpE protein homolog, partial (48%)
          Length = 993

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +1

Query: 158 LGNLVVDTIGHSFSKKYHNRVIQHEAGHFLIAYLVGILPKGYTLSSLDALKKDGSLNVQA 217
           LG   V+T+G  F    H  +++ ++  F    ++    KG+ L   D L +   + V A
Sbjct: 274 LGVEPVETVGKFFDPLLHEAIMREDSTEFEEGIIIQEFRKGFQLG--DRLLRPSMVKVSA 447

Query: 218 G 218
           G
Sbjct: 448 G 450


>AW720015 
          Length = 542

 Score = 26.2 bits (56), Expect = 7.5
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
 Frame = +1

Query: 178 VIQHEAGHFLIAYLVGILPKGY-TLSSLDALKKDGSLNVQAGSAFVDFEFLEEVNAGK-- 234
           V +HEAGH ++   V  L  G   +  L  L + G          + F ++   N  +  
Sbjct: 37  VARHEAGHAVVGTAVANLIAGQPRVEKLSILPRSGGA--------LGFTYIPPTNEDRYL 192

Query: 235 VSAKTLNKFSCIALAGVCTEYLIYG--FSEGGLDDIRK 270
           +    L       L G   E ++Y    S G LDDIR+
Sbjct: 193 LFIDELRGRLVTLLGGRAAEEVVYSGRVSTGALDDIRR 306


>AV764731 
          Length = 166

 Score = 25.8 bits (55), Expect = 9.8
 Identities = 12/39 (30%), Positives = 19/39 (47%)
 Frame = +2

Query: 147 WTLDTVSYGGGLGNLVVDTIGHSFSKKYHNRVIQHEAGH 185
           WT +TV +  G      DT+ + F    HN V  ++A +
Sbjct: 26  WTFNTVGWPKGKRFRAADTLEYKFGAGAHNVVAVNKAAY 142


>AU089302 
          Length = 327

 Score = 25.8 bits (55), Expect = 9.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 142 GLLFLWTLDTVSYGGGLGNLVVDTIGHSFSKKY 174
           G L LW L       G+GNLV D +  +F  ++
Sbjct: 167 GYLALWVLLQARIEDGVGNLVTDLVWMAFVYRF 69


>TC12642 weakly similar to UP|Q7X9A9 (Q7X9A9) Beta-primeverosidase  ,
           partial (40%)
          Length = 652

 Score = 25.8 bits (55), Expect = 9.8
 Identities = 23/86 (26%), Positives = 38/86 (43%), Gaps = 10/86 (11%)
 Frame = +3

Query: 167 GHSFSKKY---HNRVIQHEAGHFLIAYLVGILPKGYTLSSLDAL-------KKDGSLNVQ 216
           G+S ++ Y   HN ++ H A   +      I  KG    +L++         KD      
Sbjct: 261 GNSATEPYIVTHNLILAHAAAVKVYREKFQISQKGQIGITLNSAWVVPLSQSKDDIEAAS 440

Query: 217 AGSAFVDFEFLEEVNAGKVSAKTLNK 242
            G AF+   F+E +N+GK  A  +N+
Sbjct: 441 RGLAFMYDWFMEPLNSGKYPAVMVNR 518


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,922,783
Number of Sequences: 28460
Number of extensions: 60077
Number of successful extensions: 260
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of query: 309
length of database: 4,897,600
effective HSP length: 90
effective length of query: 219
effective length of database: 2,336,200
effective search space: 511627800
effective search space used: 511627800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)