Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0520.2
         (280 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15025 similar to UP|MCAT_ARATH (Q93XM7) Mitochondrial carnitin...   249  3e-67
TC19361 similar to GB|BAB08924.1|9758516|AB016882 carnitine/acyl...    65  1e-14
TC7843 weakly similar to GB|AAF03412.1|6090963|AF188712 mitochon...    52  9e-08
TC15127 weakly similar to GB|AAG29586.1|11094343|AF155813 mitoch...    49  1e-06
TC20274 similar to UP|OAC1_YEAST (P32332) Mitochondrial oxaloace...    45  1e-05
TC14563 similar to UP|Q9SSP4 (Q9SSP4) F3N23.2 protein (At1g72820...    44  4e-05
TC17966 similar to UP|Q8L9F8 (Q8L9F8) Mitochondrial carrier-like...    42  1e-04
TC10512 similar to UP|Q9FI73 (Q9FI73) Mitochondrial carrier prot...    42  2e-04
TC16446 similar to UP|BAC84529 (BAC84529) Mitochondrial aspartat...    39  8e-04
TC19237 similar to GB|AAP42736.1|30984546|BT008723 At1g07030 {Ar...    39  8e-04
TC8441 homologue to UP|ADT2_SOLTU (P27081) ADP,ATP carrier prote...    39  0.001
BP047276                                                               38  0.002
TC7882 homologue to UP|O49875 (O49875) Adenine nucleotide transl...    37  0.005
TC9482 similar to UP|Q9FI73 (Q9FI73) Mitochondrial carrier prote...    36  0.008
TC19374 similar to UP|Q8LNZ1 (Q8LNZ1) Mitochondrial uncoupling p...    35  0.011
BP056260                                                               35  0.014
TC12607 weakly similar to UP|MRS3_YEAST (P10566) Mitochondrial R...    34  0.024
BP062301                                                               34  0.024
BP039065                                                               33  0.041
TC12374 similar to UP|Q8LFJ3 (Q8LFJ3) Contains similarity to per...    33  0.054

>TC15025 similar to UP|MCAT_ARATH (Q93XM7) Mitochondrial
           carnitine/acylcarnitine carrier-like protein (A BOUT DE
           SOUFFLE) (Carnitine/acylcarnitine translocase-like
           protein) (CAC-like protein), partial (97%)
          Length = 1256

 Score =  249 bits (637), Expect = 3e-67
 Identities = 159/303 (52%), Positives = 185/303 (60%), Gaps = 24/303 (7%)
 Frame = +2

Query: 1   MGDVAKDLIAGTVEGAAQLIVGHPFDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAE 60
           MGDVAKDL AGTV GA+QLIVGHPFDTIKVKLQSQPTP+PGQ P++SGA DAVKQT+AAE
Sbjct: 161 MGDVAKDLAAGTVGGASQLIVGHPFDTIKVKLQSQPTPLPGQPPKFSGAFDAVKQTIAAE 340

Query: 61  GPRGLYKGRGAPLATVAAFNAALFTVRGQMEALFRSHP------------GAGAGLAVSF 108
           GPRGL+KG GAPLATVAAFNA LFTVRGQME + RSHP            GAGAG+AVSF
Sbjct: 341 GPRGLFKGMGAPLATVAAFNAVLFTVRGQMETIVRSHPGAPLTVSQQFICGAGAGVAVSF 520

Query: 109 LVCPTELIKCRFH*WRFNCHVLVTFSVHSFYQLM*ILSSLITNK---KNLTIKLVLVLQQ 165
           L CPTELIKCR                  +   M +   ++ ++   + L   LV  + +
Sbjct: 521 LACPTELIKCRLQAQSALGGSGAAAVAVKYGGPMDVARQVLRSEGGTRGLFKGLVPTMAR 700

Query: 166 PMP*NQIAKGTS*MNLSACLEILQQFI--------LKS*SVMVAEGLTVASFRFLVYGTG 217
            +P N I  G          E ++Q I        L   S++VA GL  ASF FLVY T 
Sbjct: 701 EIPGNAIMFGV--------YEAIKQQIAGGTDTSGLGRGSLIVAGGLAGASFWFLVYPTD 856

Query: 218 VVKK*FK*MTREIQNFQVQLMLLEGF-*PEGITGLYKGFGTAMFRSVPVNAACFLAYKMT 276
           VVK   +    +   F   L         EG  GLYKGFG AM RS+P NAACFLAY+MT
Sbjct: 857 VVKSVIQVDDYKNPKFSGSLDAFRKIQATEGFKGLYKGFGPAMARSIPANAACFLAYEMT 1036

Query: 277 RSA 279
           RSA
Sbjct: 1037RSA 1045


>TC19361 similar to GB|BAB08924.1|9758516|AB016882 carnitine/acylcarnitine
           translocase-like protein {Arabidopsis thaliana;} ,
           partial (20%)
          Length = 515

 Score = 64.7 bits (156), Expect(2) = 1e-14
 Identities = 30/34 (88%), Positives = 31/34 (90%)
 Frame = +2

Query: 246 EGITGLYKGFGTAMFRSVPVNAACFLAYKMTRSA 279
           EGI GLYKGFG AMFRSVP NAACFLAY+MTRSA
Sbjct: 71  EGIKGLYKGFGPAMFRSVPANAACFLAYEMTRSA 172



 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 20/41 (48%), Positives = 28/41 (67%)
 Frame = +2

Query: 44 PRYSGAIDAVKQTLAAEGPRGLYKGRGAPLATVAAFNAALF 84
          P++SG+IDA ++ LA+EG +GLYKG G  +      NAA F
Sbjct: 23 PKFSGSIDAFRRILASEGIKGLYKGFGPAMFRSVPANAACF 145



 Score = 30.8 bits (68), Expect(2) = 1e-14
 Identities = 16/22 (72%), Positives = 17/22 (76%)
 Frame = +3

Query: 224 K*MTREIQNFQVQLMLLEGF*P 245
           K*MT  I +F V LMLLEGF*P
Sbjct: 3   K*MTTNIXSFLVPLMLLEGF*P 68


>TC7843 weakly similar to GB|AAF03412.1|6090963|AF188712 mitochondrial
            dicarboxylate carrier {Mus musculus;} , partial (22%)
          Length = 1594

 Score = 52.4 bits (124), Expect = 9e-08
 Identities = 27/88 (30%), Positives = 42/88 (47%)
 Frame = +3

Query: 10   AGTVEGAAQLIVGHPFDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAEGPRGLYKGR 69
            A    G    +  +P D IK ++ +     PG  P Y+GA+D   +T+ AEGP  LYKG 
Sbjct: 957  ASFAAGFVAAVASNPVDVIKTRVMNMKVE-PGAEPPYAGALDCALKTVRAEGPMALYKGF 1133

Query: 70   GAPLATVAAFNAALFTVRGQMEALFRSH 97
               ++    F   LF    Q+  +F+ +
Sbjct: 1134 IPTISRQGPFTVVLFVTLEQVRKMFKDY 1217



 Score = 37.4 bits (85), Expect = 0.003
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
 Frame = +3

Query: 4   VAKDLIAGTVEGAAQLIVGHPFDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAEGPR 63
           +++ + AG + G     VG+P D   V++Q+       Q   YS  +DA+ +    EG  
Sbjct: 639 LSRKIEAGLIAGGIGAAVGNPADVAMVRMQADGRLPAAQRRNYSSVVDAITRMAKQEGVT 818

Query: 64  GLYKGRG-----APLATVAAFNA-----ALFTVRGQMEALFRSHPGA--GAGLAVSFLVC 111
            L++G       A L T +   +      +   +G M     +H  A   AG   +    
Sbjct: 819 SLWRGSSLTVNRAMLVTASQLASYDQFKEMILEKGLMRDGLGTHVTASFAAGFVAAVASN 998

Query: 112 PTELIKCR 119
           P ++IK R
Sbjct: 999 PVDVIKTR 1022


>TC15127 weakly similar to GB|AAG29586.1|11094343|AF155813 mitochondrial
           uncoupling protein 5 short form {Mus musculus;}, partial
           (24%)
          Length = 650

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 26/92 (28%), Positives = 42/92 (45%)
 Frame = +3

Query: 4   VAKDLIAGTVEGAAQLIVGHPFDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAEGPR 63
           +   + A    G    +  +P D IK ++ +      G+ P Y+GA+D   +T+ AEGP 
Sbjct: 141 IGTHVAASFAAGFVAAVASNPVDVIKTRVMNMKVDA-GEAPPYNGALDCALKTVKAEGPL 317

Query: 64  GLYKGRGAPLATVAAFNAALFTVRGQMEALFR 95
            LYKG    ++    F   LF    Q+  L +
Sbjct: 318 ALYKGFIPTISRQGPFTVVLFVTLEQVRKLLK 413


>TC20274 similar to UP|OAC1_YEAST (P32332) Mitochondrial oxaloacetate
          transport protein (Mitochondrial carrier protein PMT),
          partial (7%)
          Length = 509

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = +3

Query: 40 PGQLPRYSGAIDAVKQTLAAEGPRGLYKGRGAPLATVAAFNAALFTVRGQMEALFR 95
          PG  P YSGAID   +T+ AEGP  LYKG    ++    F   LF    Q+  L +
Sbjct: 3  PGAAPPYSGAIDCALKTVRAEGPMALYKGFIPTISRQGPFPVVLFVTLEQVRKLLK 170


>TC14563 similar to UP|Q9SSP4 (Q9SSP4) F3N23.2 protein (At1g72820/F3N23_2),
           partial (55%)
          Length = 1025

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 27/76 (35%), Positives = 36/76 (46%), Gaps = 4/76 (5%)
 Frame = +2

Query: 10  AGTVEGAAQLIVGHPFDTIKVKLQSQ----PTPIPGQLPRYSGAIDAVKQTLAAEGPRGL 65
           AG     A  +V  P D +  +L  Q     +   G   RY   IDA ++ L  +GPRGL
Sbjct: 776 AGLSAAMAAQLVWTPVDVVSQRLMVQGCCNSSNPKGSAVRYINGIDAFRKILNTDGPRGL 955

Query: 66  YKGRGAPLATVAAFNA 81
           Y+G G  + T A  NA
Sbjct: 956 YRGFGISILTYAPSNA 1003



 Score = 33.1 bits (74), Expect = 0.054
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 246 EGITGLYKGFGTAMFRSVPVNAACFLAYKMTRS 278
           EG   LY+GFGT++  ++P  A    A ++T+S
Sbjct: 608 EGFRALYRGFGTSLMGTIPARALYMAALEVTKS 706



 Score = 27.7 bits (60), Expect = 2.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 246 EGITGLYKGFGTAMFRSVPVNAACFLAY 273
           +G  GLY+GFG ++    P NA  + +Y
Sbjct: 938 DGPRGLYRGFGISILTYAPSNAVWWASY 1021


>TC17966 similar to UP|Q8L9F8 (Q8L9F8) Mitochondrial carrier-like protein,
           partial (53%)
          Length = 917

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
 Frame = +2

Query: 10  AGTVEGAAQLIVGHPFDTIKVKLQSQPTPIPGQL------PRYSGAIDAVKQTLAAEGPR 63
           AG     A  +V  P D +  +L  Q T     +        Y    DA ++ L A+GP+
Sbjct: 80  AGVASAMAAQLVWTPIDVVSQRLMVQGTGGSKTMLANLNSESYRNGFDAFRKILCADGPK 259

Query: 64  GLYKGRGAPLATVAAFNAALFT 85
           G Y+G G  L T A  NA  +T
Sbjct: 260 GFYRGFGISLLTYAPSNAVWWT 325



 Score = 29.3 bits (64), Expect = 0.78
 Identities = 22/74 (29%), Positives = 32/74 (42%), Gaps = 2/74 (2%)
 Frame = +2

Query: 204 LTVASFRFLVYGTGVVKK*FK*MTREI--QNFQVQLMLLEGF*PEGITGLYKGFGTAMFR 261
           + V S R +V GTG  K     +  E     F     +L     +G  G Y+GFG ++  
Sbjct: 125 IDVVSQRLMVQGTGGSKTMLANLNSESYRNGFDAFRKILCA---DGPKGFYRGFGISLLT 295

Query: 262 SVPVNAACFLAYKM 275
             P NA  + +Y M
Sbjct: 296 YAPSNAVWWTSYSM 337


>TC10512 similar to UP|Q9FI73 (Q9FI73) Mitochondrial carrier protein-like
           (At5g48970), partial (43%)
          Length = 563

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 28/91 (30%), Positives = 38/91 (40%), Gaps = 11/91 (12%)
 Frame = +1

Query: 7   DLIAGTVEGAAQLIVGHPFDTIKVKLQSQPTP----------IPGQLP-RYSGAIDAVKQ 55
           D  AG + G     V  P D IK++ Q Q  P          +    P +Y+G   A K 
Sbjct: 142 DSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRRNLAATAPSKYTGMFQASKD 321

Query: 56  TLAAEGPRGLYKGRGAPLATVAAFNAALFTV 86
            L  EG +G ++G    L  V  + A  FTV
Sbjct: 322 ILREEGVQGFWRGNVPALLMVMPYTAIQFTV 414


>TC16446 similar to UP|BAC84529 (BAC84529) Mitochondrial aspartate-glutamate
           carrier protein-like, partial (43%)
          Length = 668

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 23/81 (28%), Positives = 35/81 (42%)
 Frame = +3

Query: 6   KDLIAGTVEGAAQLIVGHPFDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAEGPRGL 65
           ++ + G   GA    +  P D IK +L  Q     G   +Y G +D V+  +  EGPR  
Sbjct: 111 ENAVIGAFAGALTGAITTPLDVIKTRLMVQ-----GSANQYKGIVDCVQTIMKEEGPRAF 275

Query: 66  YKGRGAPLATVAAFNAALFTV 86
            KG G  +  +    +  F V
Sbjct: 276 LKGIGPRVLWIGIGGSIFFGV 338


>TC19237 similar to GB|AAP42736.1|30984546|BT008723 At1g07030 {Arabidopsis
           thaliana;}, partial (23%)
          Length = 427

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 8   LIAGTVEGAAQLIVGHPFDTIKVKLQSQPTPIPGQLPRYSGAI-DAVKQTLAAEGPRGLY 66
           +IAG++ G  + +   P DT+K  +Q+      G  P  +G +  A++  L ++GP  LY
Sbjct: 227 MIAGSIAGCVEHMAMFPVDTVKTHMQAL-----GSCPIKTGTVRQALRSILQSDGPSALY 391

Query: 67  KGRGA 71
           +G GA
Sbjct: 392 RGIGA 406


>TC8441 homologue to UP|ADT2_SOLTU (P27081) ADP,ATP carrier protein,
           mitochondrial precursor (ADP/ATP translocase) (Adenine
           nucleotide translocator) (ANT) (Fragment), partial (48%)
          Length = 884

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 20  IVGHPFDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAEGPRGLYKGRGAPLATVAA 78
           +  +P DT++ ++        G+  +Y  ++DA  Q L  EGP+ L+KG GA +    A
Sbjct: 331 LASYPIDTVRRRMMMTS----GEAVKYKSSMDAFTQILKNEGPKSLFKGAGANILRAVA 495


>BP047276 
          Length = 516

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +3

Query: 10  AGTVEGAAQLIVGHPFDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAEGPRGLYKG 68
           AG +E    +++  PF+ +K+KLQ Q    P +L +Y G +   +  L  EG RGL+ G
Sbjct: 330 AGVLEA---IVIVTPFEVVKIKLQQQRGLSP-ELLKYKGPVHCARTILHEEGIRGLWAG 494


>TC7882 homologue to UP|O49875 (O49875) Adenine nucleotide translocator,
           complete
          Length = 1656

 Score = 36.6 bits (83), Expect = 0.005
 Identities = 20/81 (24%), Positives = 39/81 (47%), Gaps = 1/81 (1%)
 Frame = +1

Query: 5   AKDLIAGTVEGAAQLIVGHPFDTIKVKLQSQPTPIP-GQLPRYSGAIDAVKQTLAAEGPR 63
           A +L +G   GA+ L+  +  D  + +L +       G   +++G +D  ++TLA++G  
Sbjct: 772 AGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLASDGVA 951

Query: 64  GLYKGRGAPLATVAAFNAALF 84
           GLY+G       +  +    F
Sbjct: 952 GLYRGFNISCVGIIVYRGLYF 1014


>TC9482 similar to UP|Q9FI73 (Q9FI73) Mitochondrial carrier protein-like
           (At5g48970), partial (42%)
          Length = 529

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +3

Query: 9   IAGTVEGAAQLIVGHPFDTIKVKLQS---QPTPIPG---QLPRYSGAIDAVKQTLAAEGP 62
           + G   G    +V HP D +K + Q    Q  P  G   +   YS   DA+++ L  EG 
Sbjct: 180 LCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVERRAYSSMFDAIQRILRLEGW 359

Query: 63  RGLYKG 68
            GLYKG
Sbjct: 360 AGLYKG 377


>TC19374 similar to UP|Q8LNZ1 (Q8LNZ1) Mitochondrial uncoupling protein,
           partial (49%)
          Length = 556

 Score = 35.4 bits (80), Expect = 0.011
 Identities = 19/48 (39%), Positives = 24/48 (49%), Gaps = 3/48 (6%)
 Frame = +3

Query: 24  PFDTIKVKLQSQPTPIPGQ---LPRYSGAIDAVKQTLAAEGPRGLYKG 68
           P DT KV+LQ Q   I G    LP+Y G +  +      EG   L+KG
Sbjct: 177 PLDTAKVRLQLQKQGIAGDVASLPKYKGMLGTIATIAREEGASALWKG 320


>BP056260 
          Length = 463

 Score = 35.0 bits (79), Expect = 0.014
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -3

Query: 20  IVGHPFDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAEGPRGLYKGRGAPLATVAA 78
           +  +P DT++ ++        G+  +Y  + DA    +  EGP+ L+KG GA +    A
Sbjct: 461 VSSYPLDTVRRRMMMTS----GEAVKYQSSFDAFSPIVKKEGPKSLFKGAGANILRAVA 297


>TC12607 weakly similar to UP|MRS3_YEAST (P10566) Mitochondrial RNA splicing
           protein MRS3, partial (7%)
          Length = 776

 Score = 34.3 bits (77), Expect = 0.024
 Identities = 21/73 (28%), Positives = 36/73 (48%)
 Frame = +2

Query: 11  GTVEGAAQLIVGHPFDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAEGPRGLYKGRG 70
           G + GA    +  P DTIK +LQ     + G   R S     VK  +  +G +G+Y+G G
Sbjct: 47  GIIAGATASCITTPLDTIKTRLQ-----VMGHEQR-SSVKQVVKDLIKEDGWKGVYRGLG 208

Query: 71  APLATVAAFNAAL 83
               +++A+  ++
Sbjct: 209 PRFFSMSAWGTSM 247


>BP062301 
          Length = 364

 Score = 34.3 bits (77), Expect = 0.024
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 24  PFDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAEGPRGLYKGRGAPLATVAAFNAAL 83
           P + +K+ LQ Q    P  + +Y+G I  +K     EG RGL+KG G   A +   +A  
Sbjct: 124 PLERMKILLQVQN---PHNI-KYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVK 291

Query: 84  F 84
           F
Sbjct: 292 F 294


>BP039065 
          Length = 564

 Score = 33.5 bits (75), Expect = 0.041
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
 Frame = +3

Query: 10  AGTVEGAAQLIVGHPFDTIKVKLQSQPTPIPGQLPRYS--GAIDAVKQTLAAEGPRGLYK 67
           AG + GAA   V  P D IK+ +Q+    +     + +  G ++A+      EG RG +K
Sbjct: 276 AGAIAGAAAKTVTAPLDRIKLLMQTHGVRVGQDSAKKAAIGFVEAITVIGKEEGIRGYWK 455

Query: 68  GRGAPLATVAAFNAALFTVRGQMEALFRSHPG 99
           G    +  V  ++A         + +FR   G
Sbjct: 456 GNLPQVIRVIPYSAVQLFAYEIYKKIFRGQNG 551


>TC12374 similar to UP|Q8LFJ3 (Q8LFJ3) Contains similarity to peroxisomal
          membrane carrier protein, partial (22%)
          Length = 501

 Score = 33.1 bits (74), Expect = 0.054
 Identities = 22/62 (35%), Positives = 30/62 (47%)
 Frame = +1

Query: 25 FDTIKVKLQSQPTPIPGQLPRYSGAIDAVKQTLAAEGPRGLYKGRGAPLATVAAFNAALF 84
          F  I+ +LQ +P      +PRY  +   VK+T   EG RG YKG    L   A  ++  F
Sbjct: 1  FQVIRSRLQQRPGG--DGVPRYIDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITF 174

Query: 85 TV 86
           V
Sbjct: 175IV 180



 Score = 27.7 bits (60), Expect = 2.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 246 EGITGLYKGFGTAMFRSVPVNAACFLAYK 274
           EG+ G YKG    + ++ P ++  F+ Y+
Sbjct: 100 EGVRGFYKGITPNLLKNAPASSITFIVYE 186


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.341    0.150    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,892,494
Number of Sequences: 28460
Number of extensions: 48239
Number of successful extensions: 448
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of query: 280
length of database: 4,897,600
effective HSP length: 89
effective length of query: 191
effective length of database: 2,364,660
effective search space: 451650060
effective search space used: 451650060
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 55 (25.8 bits)


Lotus: description of TM0520.2