BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0520.11
(117 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU088799 107 2e-38
BI419653 27 0.69
TC14852 similar to UP|Q9LZI2 (Q9LZI2) DTDP-glucose 4-6-dehydrata... 27 0.69
CB826981 27 1.2
TC15181 weakly similar to UP|Q03991 (Q03991) Merozoite surface a... 27 1.2
TC20102 26 1.5
TC15532 similar to GB|AAO42896.1|28416731|BT004650 At4g13612 {Ar... 26 1.5
AV410147 26 1.5
AW163993 26 2.0
AV774587 25 2.6
TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroq... 25 2.6
BP052946 25 2.6
TC19866 similar to UP|Q8L7J2 (Q8L7J2) Beta-glucosidase, partial ... 25 3.4
TC19572 25 4.4
TC13097 similar to UP|Q9ZVB8 (Q9ZVB8) At2g41330 protein (At2g413... 25 4.4
AV411995 24 5.8
TC8687 similar to UP|Q9SXL2 (Q9SXL2) Serine decarboxylase, parti... 24 5.8
BP048314 24 7.6
TC20237 24 7.6
BP056036 24 7.6
>AU088799
Length = 436
Score = 107 bits (267), Expect(2) = 2e-38
Identities = 52/65 (80%), Positives = 55/65 (84%)
Frame = +3
Query: 32 KKVDRNWSGNLIASSSSSSSTSQCDLPKGQGGNVAKIKAEHRRVHSTGNIPYPGSSQPKL 91
K++ GNLIASSSSSSSTSQCDLPKGQGGNVAKIKAEHRRVH TGNIPYPG S PKL
Sbjct: 240 KRLIETGQGNLIASSSSSSSTSQCDLPKGQGGNVAKIKAEHRRVHXTGNIPYPGHSXPKL 419
Query: 92 VRSSG 96
R+ G
Sbjct: 420 XRNXG 434
Score = 65.9 bits (159), Expect(2) = 2e-38
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +1
Query: 1 MSLNCLTCSQNLQRTDSFGEFFTEKEYKEVCKK 33
MSLNCLTCSQNLQRTDSFGEFFTEKEYKE +K
Sbjct: 145 MSLNCLTCSQNLQRTDSFGEFFTEKEYKESLQK 243
Score = 33.1 bits (74), Expect = 0.012
Identities = 22/71 (30%), Positives = 36/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 21 FFTEKEYKEVCKKVDRNWSG---NLIASSSSSSSTSQCDLPKGQGGNVAKIKAEHRRVHS 77
F ++ ++VCKKVDRNWSG ++I + P+G+ G + A R H
Sbjct: 206 FSQKRNTRKVCKKVDRNWSGKPDSIIIIIVINIPV*PSQRPRGECGQ-DQG*APPRSXHR 382
Query: 78 TGNIPYPGSSQ 88
++P+P S +
Sbjct: 383 KHSLPWPLSXE 415
>BI419653
Length = 629
Score = 27.3 bits (59), Expect = 0.69
Identities = 21/65 (32%), Positives = 24/65 (36%)
Frame = +2
Query: 44 ASSSSSSSTSQCDLPKGQGGNVAKIKAEHRRVHSTGNIPYPGSSQPKLVRSSGMRRDWSF 103
A S S SSTS P G A R +T IPYP SS RR W
Sbjct: 290 APSPSRSSTSDPTTPSGSSDGPA--PKSTRSARTTTTIPYPAPE-----TSSPRRRRWRL 448
Query: 104 ENLAE 108
+ +
Sbjct: 449 SRVGD 463
>TC14852 similar to UP|Q9LZI2 (Q9LZI2) DTDP-glucose 4-6-dehydratase homolog
D18 (At3g62830/F26K9_260), partial (70%)
Length = 1470
Score = 27.3 bits (59), Expect = 0.69
Identities = 18/43 (41%), Positives = 22/43 (50%), Gaps = 4/43 (9%)
Frame = +3
Query: 44 ASSSSSSSTSQCDL----PKGQGGNVAKIKAEHRRVHSTGNIP 82
+SSSSSSS + L P + K A H R+HS G IP
Sbjct: 609 SSSSSSSSFTTTSLNEPVPISYFNHEYKQPAFHHRIHSVGKIP 737
>CB826981
Length = 591
Score = 26.6 bits (57), Expect = 1.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 74 RVHSTGNIPYPGSSQPKLVRSSGMR 98
R H N PYP SQP LV + R
Sbjct: 90 RAHLGSNSPYPTKSQPLLVEKNDER 16
>TC15181 weakly similar to UP|Q03991 (Q03991) Merozoite surface antigen 1
(Fragment), partial (16%)
Length = 539
Score = 26.6 bits (57), Expect = 1.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 74 RVHSTGNIPYPGSSQPKLVRSSGMR 98
R H N PYP SQP LV + R
Sbjct: 106 RAHLGSNSPYPTKSQPLLVEKNDER 32
>TC20102
Length = 540
Score = 26.2 bits (56), Expect = 1.5
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = -1
Query: 46 SSSSSSTSQCDLPKGQGGNVAKIKAEHRR----VHSTGNIPYPGSSQPK 90
++S +Q LP N K K R+ +ST N PY GS QPK
Sbjct: 225 NASKQQATQ*QLPHHLCSNTGKKKH*GRKGTVESNSTLNTPYRGSGQPK 79
>TC15532 similar to GB|AAO42896.1|28416731|BT004650 At4g13612 {Arabidopsis
thaliana;}, partial (70%)
Length = 570
Score = 26.2 bits (56), Expect = 1.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 48 SSSSTSQCDLPKGQGGNVAKIKAEHRRVHSTGNI 81
SSS+T D K + NVAKI+ E R G +
Sbjct: 124 SSSTTKNPDAEKSKSENVAKIEQE*ERGEKIGGL 23
>AV410147
Length = 339
Score = 26.2 bits (56), Expect = 1.5
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 45 SSSSSSSTSQCDLPKGQGGNVAKIKAEHRR 74
SSSSSSS+S PK + +I+++HRR
Sbjct: 64 SSSSSSSSSSSSSPKSRN----EIRSDHRR 141
>AW163993
Length = 438
Score = 25.8 bits (55), Expect = 2.0
Identities = 17/56 (30%), Positives = 28/56 (49%)
Frame = +3
Query: 46 SSSSSSTSQCDLPKGQGGNVAKIKAEHRRVHSTGNIPYPGSSQPKLVRSSGMRRDW 101
SS + +++ + QGG +K KAE + V S ++ GS+ SSG+ W
Sbjct: 246 SSREAISNKYAAIREQGGPASKRKAEEKNVASANSVLDKGSNSGG-APSSGLASTW 410
>AV774587
Length = 416
Score = 25.4 bits (54), Expect = 2.6
Identities = 17/61 (27%), Positives = 27/61 (43%), Gaps = 4/61 (6%)
Frame = +2
Query: 61 QGGNVAKIKAEHRRVHSTGNIPYPGSSQPKLVRSSGMRRDWSFENLAENQD----QSVSC 116
+GG+ E+R+ + IP+PG S K+ D+S +A N + Q C
Sbjct: 116 RGGSTQVSGGENRKTYQPFLIPHPGVSYQKV--------DYSSHGMAANPEPQRVQREGC 271
Query: 117 H 117
H
Sbjct: 272 H 274
>TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroquinone
glucosyltransferase (Arbutin synthase) , partial (52%)
Length = 885
Score = 25.4 bits (54), Expect = 2.6
Identities = 21/78 (26%), Positives = 35/78 (43%)
Frame = +2
Query: 38 WSGNLIASSSSSSSTSQCDLPKGQGGNVAKIKAEHRRVHSTGNIPYPGSSQPKLVRSSGM 97
W+G IASS +S + S+ P + + ++ R + P GSS +L + M
Sbjct: 494 WTGRFIASSENSPNRSKSPAP-----SRSTVQTFSTRFRTGKMKPTSGSSTTQLDTAKPM 658
Query: 98 RRDWSFENLAENQDQSVS 115
W + + N+ QS S
Sbjct: 659 -GSWKTASWSSNRAQSRS 709
>BP052946
Length = 559
Score = 25.4 bits (54), Expect = 2.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 17 SFGEFFTEKEYKEVCKKVD 35
SFG +EY+EVC++V+
Sbjct: 212 SFGNLLACREYEEVCQRVE 156
>TC19866 similar to UP|Q8L7J2 (Q8L7J2) Beta-glucosidase, partial (25%)
Length = 562
Score = 25.0 bits (53), Expect = 3.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 64 NVAKIKAEHRRVHSTGNIPYPGSSQPKLVRSS 95
N+ A+H ++ S+ + YP + QP L+ +S
Sbjct: 323 NLQVYPADHSQLSSSDHAKYPFTLQPSLIEAS 228
>TC19572
Length = 473
Score = 24.6 bits (52), Expect = 4.4
Identities = 11/42 (26%), Positives = 21/42 (49%)
Frame = +3
Query: 17 SFGEFFTEKEYKEVCKKVDRNWSGNLIASSSSSSSTSQCDLP 58
S E + ++ ++VC + +R+W+ +I S Q LP
Sbjct: 21 SITEDMSGRDIRDVCLQAERSWASKIIRGQISKDG-EQAKLP 143
>TC13097 similar to UP|Q9ZVB8 (Q9ZVB8) At2g41330 protein
(At2g41330/F13H10.12), partial (7%)
Length = 660
Score = 24.6 bits (52), Expect = 4.4
Identities = 12/17 (70%), Positives = 13/17 (75%)
Frame = -2
Query: 39 SGNLIASSSSSSSTSQC 55
S + ASSSSSSS SQC
Sbjct: 308 SSSFSASSSSSSSKSQC 258
>AV411995
Length = 428
Score = 24.3 bits (51), Expect = 5.8
Identities = 8/22 (36%), Positives = 13/22 (58%)
Frame = +2
Query: 96 GMRRDWSFENLAENQDQSVSCH 117
G++R W E++A Q + CH
Sbjct: 239 GLQRTWCKESIANEQSRCWECH 304
>TC8687 similar to UP|Q9SXL2 (Q9SXL2) Serine decarboxylase, partial (80%)
Length = 1644
Score = 24.3 bits (51), Expect = 5.8
Identities = 10/29 (34%), Positives = 14/29 (47%)
Frame = +1
Query: 14 RTDSFGEFFTEKEYKEVCKKVDRNWSGNL 42
R + F + Y+ C KVD WSG +
Sbjct: 667 RESHYSIFKAARMYRMECVKVDTLWSGEI 753
>BP048314
Length = 394
Score = 23.9 bits (50), Expect = 7.6
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = -3
Query: 11 NLQRTDSFGEFFTEKEYKEVCKKVDRNWSGNLIASSSSSSSTSQCDLP 58
NL +T T+ +++ + + S + +SSSSSSS+S C P
Sbjct: 302 NLNQTSGL----TKSSFRKQSLHIASSSSSSSSSSSSSSSSSSSCLSP 171
>TC20237
Length = 440
Score = 23.9 bits (50), Expect = 7.6
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = -3
Query: 42 LIASSSSSSSTSQCDLP 58
L+ S +SSS +S CD+P
Sbjct: 420 LLVSEASSSISSSCDIP 370
>BP056036
Length = 547
Score = 23.9 bits (50), Expect = 7.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 64 NVAKIKAEHRRVHSTG 79
N+A IK HRR+H G
Sbjct: 144 NIAAIKTVHRRIH*NG 97
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.125 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,422,165
Number of Sequences: 28460
Number of extensions: 38410
Number of successful extensions: 218
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of query: 117
length of database: 4,897,600
effective HSP length: 78
effective length of query: 39
effective length of database: 2,677,720
effective search space: 104431080
effective search space used: 104431080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)
Lotus: description of TM0520.11