TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0490.9
         (157 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8301                                                                 65  7e-12
AV410691                                                               25  8.0
TC8752                                                                 25  8.0

>TC8301 
          Length = 1243

 Score = 64.7 bits (156), Expect = 7e-12
 Identities = 35/126 (27%), Positives = 65/126 (50%)
 Frame = +2

Query: 7   AKFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRDKSLDIAIVDWNEMKKKAAGLIKLC 66
           AKFE+ + +G+ NF LW++++K +L +     A+  +  DI    W EM   A   + L 
Sbjct: 506 AKFEIPKFSGS-NFSLWKLKIKAILRKDNCLPAIDGRPADITDDKWKEMDDNAVANLHLA 682

Query: 67  VSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVNAFN 126
           V+D V++   +  T  ++WDTL   Y  K+L +++L ++   S       D   H  + +
Sbjct: 683 VADSVLSSIAEKKTAKEIWDTLIQLYEVKSLHNRILKEETLNSSNE*IHFDAGSHQQSEH 862

Query: 127 NILADL 132
           N+ + +
Sbjct: 863 NVCSTI 880


>AV410691 
          Length = 409

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 12/36 (33%), Positives = 18/36 (49%)
 Frame = -3

Query: 28  KDLLAQQGLHKALRDKSLDIAIVDWNEMKKKAAGLI 63
           +DL+   G+H  L D S D     W     ++AGL+
Sbjct: 221 EDLVFLLGVHTILGDNSRDPKACGWEHNSFQSAGLL 114


>TC8752 
          Length = 593

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 38 KALRDKSLDIAIVDWNEMKKKAAGLIKLCVSDDVMNHTLDLTTLND 83
          KAL+   L    V W     K+ G +   +S     H L L+TL +
Sbjct: 17 KALQSCMLP*MKVGWISAISKSRGFVLFLISQRDQRHELSLSTLGE 154


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,178,839
Number of Sequences: 28460
Number of extensions: 20642
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of query: 157
length of database: 4,897,600
effective HSP length: 83
effective length of query: 74
effective length of database: 2,535,420
effective search space: 187621080
effective search space used: 187621080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)