BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0490.11
(418 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG662087 72 2e-13
AV410603 45 2e-05
TC18698 37 0.006
TC16348 similar to UP|O23091 (O23091) SIMILARITY to SYT (AT4G008... 33 0.11
TC8581 similar to UP|Q94II4 (Q94II4) NAM-like protein, partial (9%) 29 1.3
TC13623 similar to UP|Q84WI3 (Q84WI3) Expressed protein (At3g035... 29 1.3
TC8743 similar to UP|Q8W259 (Q8W259) Phospholipid hydroperoxide ... 29 1.7
AV424050 29 1.7
TC19895 weakly similar to UP|Q9P7D4 (Q9P7D4) Aconitate hydratase... 28 3.7
TC14938 weakly similar to UP|Q93Z16 (Q93Z16) AT4g21150/F7J7_90, ... 27 4.8
>BG662087
Length = 373
Score = 72.0 bits (175), Expect = 2e-13
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Frame = +1
Query: 46 KKRLVVDYRPLNQFIKDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKT 105
K R+ VDY LN+ D +PLP I L + + S D SG+ Q+ + P D KT
Sbjct: 19 KWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDKT 198
Query: 106 AFCIPNAHYQWTVLPFGLKVAPSLFQKAMTKIFEPILHTSL-VYIDDVLLFSHDEESH 162
AF +Y + +PFGLK A + +Q M ++F + ++ VY+D++++ S +H
Sbjct: 199 AFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>AV410603
Length = 162
Score = 45.1 bits (105), Expect = 2e-05
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 63 DKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAF 107
D FP+P + L ++ + FSK D++SG+ Q+ + P+DR KT F
Sbjct: 13 DSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVF 147
>TC18698
Length = 808
Score = 37.0 bits (84), Expect = 0.006
Identities = 20/63 (31%), Positives = 36/63 (56%), Gaps = 1/63 (1%)
Frame = -2
Query: 102 RPKTAFCIPNAHYQWTVLPFGLKVAPSLFQKAMTKIFEPILHTSL-VYIDDVLLFSHDEE 160
+ KT I +Y + V+P GLK + +Q+ M KIF + ++ VY++D+++ S E
Sbjct: 807 KKKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE* 628
Query: 161 SHK 163
H+
Sbjct: 627 FHR 619
>TC16348 similar to UP|O23091 (O23091) SIMILARITY to SYT (AT4G00850
protein), partial (26%)
Length = 536
Score = 32.7 bits (73), Expect = 0.11
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 187 IATKEVDFLGMHFTE-----GKFVPQPHIVEELPKFPDEGLTIKQIQQFL 231
+ T ++ +HFT K P ++ +P FP + +T +QIQ+FL
Sbjct: 99 VYTLKIKHFDLHFTSVQPRAEKMQQTPQMIPMMPSFPSQNITTEQIQKFL 248
>TC8581 similar to UP|Q94II4 (Q94II4) NAM-like protein, partial (9%)
Length = 1158
Score = 29.3 bits (64), Expect = 1.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = -1
Query: 331 YHTTFKETLAVKYGIKRFDFHLRGHHFEVQIDNSSFP-----KMLEFKNKTPPNPQ 381
Y ++ K L + G K H HH +SSFP + L+ +TPP P+
Sbjct: 438 YPSSPKTPLGIDLGAKGHKGHCIHHHHHHHHQSSSFPGSGPAEPLDLPERTPPQPK 271
>TC13623 similar to UP|Q84WI3 (Q84WI3) Expressed protein (At3g03570),
partial (21%)
Length = 497
Score = 29.3 bits (64), Expect = 1.3
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +3
Query: 239 DFIPHVSKYTSKLSKMLRKNAPPWGKEQTEAIKFLKKAA---QNPPPLKIPGDGKRILQT 295
DF+P + + S R+ +PP G+ LKK + Q+ PPL+ P G L+
Sbjct: 39 DFLPFPQR---EFSDDRRRESPPDGE--------LKKTSCIHQSSPPLRQPCPGTATLRC 185
Query: 296 DASDHYWAAV 305
S+ +W A+
Sbjct: 186 RRSERWWRAL 215
>TC8743 similar to UP|Q8W259 (Q8W259) Phospholipid hydroperoxide
glutathione peroxidase , complete
Length = 680
Score = 28.9 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 376 TPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDY 409
+PP+P + + SLYDF+VK ++G+ + Y
Sbjct: 106 SPPSPSTMAEQTSKSLYDFTVKDIRGNDVSLSQY 207
>AV424050
Length = 274
Score = 28.9 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 376 TPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDY 409
+PP+P + + SLYDF+VK ++G+ + Y
Sbjct: 103 SPPSPSTMAEQTSKSLYDFTVKDIRGNDVSLSQY 204
>TC19895 weakly similar to UP|Q9P7D4 (Q9P7D4) Aconitate hydratase, partial
(3%)
Length = 683
Score = 27.7 bits (60), Expect = 3.7
Identities = 11/42 (26%), Positives = 21/42 (49%)
Frame = -1
Query: 138 FEPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVM 179
++P+ + Y D+ + + +E H FLQ C+K V+
Sbjct: 455 YKPVHRLLMSYPQDIYM*CYQQEQHHSFLQLQQPCCTKSSVL 330
>TC14938 weakly similar to UP|Q93Z16 (Q93Z16) AT4g21150/F7J7_90, partial (60%)
Length = 1582
Score = 27.3 bits (59), Expect = 4.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Frame = -3
Query: 260 PPWGKEQT-----EAIKFLKKAAQNPPPLKIPGDGKRILQTDASDHYWA 303
PPW + E KF + + P K P +GKRI A + WA
Sbjct: 1103 PPWNRMANVAGTVELGKFFRFTPKRNSPTKKPMNGKRINPKKARESSWA 957
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,753,423
Number of Sequences: 28460
Number of extensions: 112809
Number of successful extensions: 535
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of query: 418
length of database: 4,897,600
effective HSP length: 93
effective length of query: 325
effective length of database: 2,250,820
effective search space: 731516500
effective search space used: 731516500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0490.11