BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0487.5
(658 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12731 similar to UP|AAQ62873 (AAQ62873) At1g76970, partial (33%) 189 2e-48
TC17572 similar to UP|O80910 (O80910) At2g38410 protein, partial... 186 8e-48
AV420181 160 8e-40
TC8188 similar to UP|Q9LFL3 (Q9LFL3) TOM (Target of myb1)-like p... 155 3e-38
AU252170 139 1e-33
AV408126 98 5e-21
AV415503 72 4e-13
TC9766 similar to UP|Q9LNC6 (Q9LNC6) F9P14.7 protein (At1g06210/... 67 7e-12
TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structura... 43 2e-04
TC18789 similar to UP|Q94KE2 (Q94KE2) AT3g22390/MCB17_12, partia... 35 0.038
TC9594 weakly similar to GB|AAM19966.1|20466089|AY098956 At2g326... 35 0.038
TC14981 similar to UP|AAQ62873 (AAQ62873) At1g76970, partial (11%) 35 0.050
BP080979 33 0.19
TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial ... 32 0.25
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 32 0.25
TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precu... 32 0.32
TC9168 similar to GB|AAP21369.1|30102902|BT006561 At4g19200 {Ara... 31 0.55
TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomeras... 31 0.55
BP043696 31 0.55
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%) 31 0.72
>TC12731 similar to UP|AAQ62873 (AAQ62873) At1g76970, partial (33%)
Length = 580
Score = 189 bits (479), Expect = 2e-48
Identities = 93/139 (66%), Positives = 108/139 (76%)
Frame = +3
Query: 6 VERATSDMLIGPDWALNIEICDILNRDPAQSKDVVKGLKKRIGSRSSKVQLLALTLLETI 65
VERATSD L GPDWA+NIE+CDI+N DP Q+KD +K LKKR+GS+S K QLLAL +LET+
Sbjct: 162 VERATSDALTGPDWAVNIELCDIINMDPRQAKDALKILKKRLGSKSPKTQLLALFVLETL 341
Query: 66 IKNCGDIVHMHVAERDVLHEMVKIVKKKPDPRVREKIMILIDTWQEAFGGPRARYPQYYA 125
KN G+ V + ERD+L EMVKIVKKKPD VREKI+ILIDTWQEAFGG +PQYYA
Sbjct: 342 SKNXGENVFQQIIERDILKEMVKIVKKKPDLNVREKILILIDTWQEAFGGQSGVFPQYYA 521
Query: 126 AYQELLHSGAVFPQRSEQS 144
AY EL +G FP R E S
Sbjct: 522 AYNELKSAGVEFPPRGEDS 578
>TC17572 similar to UP|O80910 (O80910) At2g38410 protein, partial (28%)
Length = 772
Score = 186 bits (473), Expect = 8e-48
Identities = 87/195 (44%), Positives = 138/195 (70%), Gaps = 1/195 (0%)
Frame = +2
Query: 78 AERDVLHEMVKIVKKKPDPRVREKIMILIDTWQEAFGGPRARYPQYYAAYQELLHSGAVF 137
AER++L EM+KIV+KK D VR+KI++L+D+WQEAFGGP + PQYY AY+EL SG VF
Sbjct: 2 AERNILGEMIKIVRKKADMHVRDKILLLLDSWQEAFGGPGGKCPQYYWAYEELKRSGVVF 181
Query: 138 PQRSEQSAPVFTPLQTQPLTSYPQ-NIRDSDAQPHTAESSAESEFPTLSLSEIQNARGIM 196
P+R+ +AP+FTP T + Q + T + + +E +LS S +++ + ++
Sbjct: 182 PKRTPDAAPIFTPPPTHLTARHMQPGYGMPSSSSKTLDETMATEIESLSFSSLESMQQVL 361
Query: 197 DVLAEMLSAIEPGNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDL 256
D+L++ML A+ P ++E ++ EVI+DLV++CRT +++++ ++ +T DE LL +GL LND +
Sbjct: 362 DLLSDMLQAVNPNDREAVKDEVIIDLVDRCRTNQKKLMQMLTTTGDEELLGRGLELNDTI 541
Query: 257 QRVLAKHESIASGTP 271
Q LA+H++I SGTP
Sbjct: 542 QSFLARHDAIVSGTP 586
>AV420181
Length = 237
Score = 160 bits (404), Expect = 8e-40
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = +3
Query: 355 KADNSLALVPVGQQQPASPMSQQNALVLFDMFSNGSNAPSVNNQPTNVAVPNSPLSPQFQ 414
KADNSLALVPVGQQQPASPMSQQNALVLFDMFSNGSNAPSVNNQPTNVAVPNSPLSPQFQ
Sbjct: 3 KADNSLALVPVGQQQPASPMSQQNALVLFDMFSNGSNAPSVNNQPTNVAVPNSPLSPQFQ 182
Query: 415 QQQTFISQGVYYPNGSMP 432
QQQTFISQGVYYPNGSMP
Sbjct: 183 QQQTFISQGVYYPNGSMP 236
>TC8188 similar to UP|Q9LFL3 (Q9LFL3) TOM (Target of myb1)-like protein
(AT5g16880/F2K13_30), partial (77%)
Length = 1574
Score = 155 bits (391), Expect = 3e-38
Identities = 111/327 (33%), Positives = 174/327 (52%), Gaps = 7/327 (2%)
Frame = +3
Query: 2 VNPLVERATSDMLIGPDWALNIEICDILNRDPAQSKDVVKGLKKRIGSRSSKVQLLALTL 61
V+ LVE ATS+ L PDWA N+ +CD++N D S D+++ +KKRI +S +VQ LAL L
Sbjct: 249 VDKLVEDATSEALDEPDWATNLHLCDLINTDKVNSIDLIRAIKKRIMDKSPRVQYLALVL 428
Query: 62 LETIIKNCGDIVHMHVAERDVLHEMVKIVKKKPDPRV----REKIMILIDTWQEAFGGPR 117
LET +KNC AER VL EMV+++ DP R K +I+I+ W E+ G
Sbjct: 429 LETCVKNCEKAFSEVAAER-VLDEMVRLI---DDPHTVVNNRNKALIMIEAWGESTG--E 590
Query: 118 ARY-PQYYAAYQELLHSGAVFPQRSEQS-APVFTPLQTQPLTSYPQNIRDSDAQPHTAES 175
RY P + Y+ L G FP R +S AP+FTP + + Q++ + E
Sbjct: 591 LRYLPVFEETYKSLKSRGIRFPGRDNESLAPIFTPPPSVSVPEQQQDVEQFQLEQFQHEV 770
Query: 176 SAESEFPTLSLSEIQNARGIMDVLAEMLSAIEPGNKEGLRQEVIVDLVEQCRTYKQRVVH 235
S P + AR +++L+ +LS+ ++ L+ ++ LV+QCR + V
Sbjct: 771 PVLSFTPEQTKEAFDVARNSIELLSTVLSS--SPQQDVLQDDLTTTLVQQCRRSQSTVQR 944
Query: 236 LVNSTSD-ESLLCQGLALNDDLQRVLAKHESIASGTPGQNHTEKLNPAPPGALIDVGGPL 294
+V ++ D E+LL + L +ND++Q+VL K+E + T T L P P A+I V
Sbjct: 945 IVETSGDNEALLFEALNVNDEIQKVLDKYEEVKKPT-----TAPLQPEP--AMIPVA--- 1094
Query: 295 VDTGDTSKQSDERSPSGAEGGSQTLNQ 321
V+ ++ + + E + GS+T+ Q
Sbjct: 1095VEPDESPRHTKEDALIRKPAGSRTVVQ 1175
>AU252170
Length = 350
Score = 139 bits (351), Expect = 1e-33
Identities = 70/72 (97%), Positives = 70/72 (97%)
Frame = +2
Query: 1 MVNPLVERATSDMLIGPDWALNIEICDILNRDPAQSKDVVKGLKKRIGSRSSKVQLLALT 60
MVNPLVERATSDMLIGPDWALNIEICDILNRDPAQSKDVVKGLKKRIGS SSKVQLLALT
Sbjct: 134 MVNPLVERATSDMLIGPDWALNIEICDILNRDPAQSKDVVKGLKKRIGSTSSKVQLLALT 313
Query: 61 LLETIIKNCGDI 72
LLETI KNCGDI
Sbjct: 314 LLETIXKNCGDI 349
>AV408126
Length = 428
Score = 97.8 bits (242), Expect = 5e-21
Identities = 45/66 (68%), Positives = 57/66 (86%)
Frame = +1
Query: 6 VERATSDMLIGPDWALNIEICDILNRDPAQSKDVVKGLKKRIGSRSSKVQLLALTLLETI 65
VE+ATSD+L+GPDW +NIEICD +N + Q KDVVK +KKR+ +SSKVQLLALTLLET+
Sbjct: 229 VEKATSDLLMGPDWTMNIEICDSINSNHWQPKDVVKAVKKRLQHKSSKVQLLALTLLETM 408
Query: 66 IKNCGD 71
+KNCG+
Sbjct: 409 VKNCGE 426
>AV415503
Length = 261
Score = 71.6 bits (174), Expect = 4e-13
Identities = 33/74 (44%), Positives = 49/74 (65%)
Frame = +1
Query: 66 IKNCGDIVHMHVAERDVLHEMVKIVKKKPDPRVREKIMILIDTWQEAFGGPRARYPQYYA 125
+ N G+ +H V + V+ +VK+VKKK D VRE+I +L+D Q + GG ++PQYY
Sbjct: 4 MNNTGEHIHEQVIDTGVIPILVKLVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYN 183
Query: 126 AYQELLHSGAVFPQ 139
AY EL+++G FPQ
Sbjct: 184 AYYELVNAGIRFPQ 225
>TC9766 similar to UP|Q9LNC6 (Q9LNC6) F9P14.7 protein (At1g06210/F9P14_4),
partial (43%)
Length = 640
Score = 67.4 bits (163), Expect = 7e-12
Identities = 33/86 (38%), Positives = 53/86 (61%)
Frame = +1
Query: 5 LVERATSDMLIGPDWALNIEICDILNRDPAQSKDVVKGLKKRIGSRSSKVQLLALTLLET 64
+V+ AT + L P+W +N+ IC ++N D +VVK +K++I +S VQ L+L LLET
Sbjct: 229 MVDEATLETLEEPNWGMNLRICGMINSDEFNGSEVVKAIKRKINHKSPVVQRLSLDLLET 408
Query: 65 IIKNCGDIVHMHVAERDVLHEMVKIV 90
NC + V VA +L +MV+++
Sbjct: 409 CAMNC-EKVFSEVASEKLLEDMVRLI 483
>TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structural protein
pp78/81, partial (5%)
Length = 710
Score = 42.7 bits (99), Expect = 2e-04
Identities = 54/226 (23%), Positives = 75/226 (32%), Gaps = 49/226 (21%)
Frame = +3
Query: 441 QSRYAQSTGPAWNGQAA---QQQQPPSPVNGAQS-------------------GGSFPPP 478
+++ + T P +A QQQ PSPVN QS SFPPP
Sbjct: 3 ETQTSAGTDPVQQAASAPLQSQQQFPSPVNLPQSIPVVPPPNAPPQLPPQQGLPPSFPPP 182
Query: 479 PWEAQAAENGSPVAGNQYPQPLQVTQMVVTHVQGA------PLPQGPQAMGYDQAVGMYM 532
+Q P +P P+Q + Q P P P Y Q
Sbjct: 183 NQFSQTQIPAVPQRDPYFPPPVQSQETPNQQYQQPLAPQPHPQPGAPPHQQYQQTPHPQY 362
Query: 533 QQP----NASHMSAMNNQVQSNQFGMH---PQYAQGVAASPYMGMVPHQMQNGPVAHPMY 585
QP + + ++N + G H P Y P + P Q +GP A P
Sbjct: 363 SQPAPPQHQPPIPSINPPQLQSSLGHHVEEPPYVPSQTYPPNLRQPPSQPPSGPPAPP-- 536
Query: 586 AQQMY--------------GNQYMGGYGYGQQPQQGVQYVEQQMHG 617
+QQ Y G+ Y GYG P + +Y +G
Sbjct: 537 SQQFYGTAPHAYEPPPSRSGSGYSSGYGSSSGPAEQYRYGGPPQYG 674
>TC18789 similar to UP|Q94KE2 (Q94KE2) AT3g22390/MCB17_12, partial (5%)
Length = 523
Score = 35.0 bits (79), Expect = 0.038
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Frame = +3
Query: 362 LVPVGQQQPASPMS-QQNALVLFDMFSNGS----------NAPSVNNQPTNVAVPNS-PL 409
+ P+ QQQ A+ S + ++ + SNG+ NAPS + T A+ S P
Sbjct: 33 IFPLNQQQAAAAASVRPGSMKSLPVTSNGAPSVTPNSAPPNAPSGSGASTTPAMSFSYPS 212
Query: 410 SPQFQQQQTFISQGVYYPNGSMPSVGSPQYEQSRYAQSTGPAWNG----------QAAQQ 459
P + Q I Q YP VG P + + Q P +NG QQ
Sbjct: 213 MPGNETQYLAILQNNAYPFPIPAHVGGPPAYRGTHGQPPFPFFNGSFYSSQMIHPSQIQQ 392
Query: 460 QQPPSPVNGAQSG 472
QQ P+ +Q G
Sbjct: 393 QQHPAQSQQSQQG 431
>TC9594 weakly similar to GB|AAM19966.1|20466089|AY098956
At2g32600/T26B15.16 {Arabidopsis thaliana;}, partial
(9%)
Length = 502
Score = 35.0 bits (79), Expect = 0.038
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Frame = +3
Query: 403 AVPNSPL--SPQFQQQQTFISQGVYYPNGSMPSVGSPQYEQSRYA----QSTGPAWNGQA 456
A P P+ P + QQQ G P P++ PQY+Q R Q P
Sbjct: 3 AAPXQPMPGQPTWHQQQX----GQLPP----PTMPPPQYQQFRPPPSGMQMPPPPQGVPG 158
Query: 457 AQQQQPPSPVNGAQSGGSFPPPPWEAQAAENGSPVAGNQYPQPLQVTQMVVTHVQGAPLP 516
+ PP V G Q + PPP + G P+A YPQ + H G P P
Sbjct: 159 PPRHLPPPAVMGGQPPQVWRPPPPPQYQQQVGRPMA---YPQSSMPPPPPLPHNHGMPPP 329
>TC14981 similar to UP|AAQ62873 (AAQ62873) At1g76970, partial (11%)
Length = 677
Score = 34.7 bits (78), Expect = 0.050
Identities = 27/89 (30%), Positives = 38/89 (42%)
Frame = +1
Query: 564 ASPYMGMVPHQMQNGPVAHPMYAQQMYGNQYMGGYGYGQQPQQGVQYVEQQMHGLSMSDD 623
+S ++ P + V P ++ Q+ +G G G + G + +
Sbjct: 61 SSEHLPPAPWDTPSPVVIPPPPSKHNQRQQFFEQHG-GSHSSNGSSSSSDGLVGQTQNLS 237
Query: 624 RNSSYVPPKKPSKPEDKLFGDLVDMAKVK 652
NSS P K KPED LF DLVD AK K
Sbjct: 238 LNSS--TPPKQQKPEDALFKDLVDFAKSK 318
>BP080979
Length = 352
Score = 32.7 bits (73), Expect = 0.19
Identities = 21/60 (35%), Positives = 22/60 (36%)
Frame = +3
Query: 440 EQSRYAQSTGPAWNGQAAQQQQPPSPVNGAQSGGSFPPPPWEAQAAENGSPVAGNQYPQP 499
EQS+ QS G NG PP P G Q G PP GNQ P P
Sbjct: 159 EQSQSTQSVGKRSNGHRLPXPTPPPPPQGPQGGRQILPP------RRRPPRPLGNQRPLP 320
>TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial (7%)
Length = 841
Score = 32.3 bits (72), Expect = 0.25
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = +1
Query: 411 PQFQQQQTFISQGVYYPNGSMPSVGSPQYEQSRYAQSTGPAWNGQAAQQQQPPSPVNGA- 469
P FQ Q P S PQ Q ++ Q P Q QQ QP
Sbjct: 82 PHFQPHPQPQLQSQPQPQHIQQSQPQPQ-SQPQHIQQPQPQPQLQHIQQSQPQPQFQNQH 258
Query: 470 -QSGGSFPPPPWEA 482
Q G++PPPPW A
Sbjct: 259 FQYPGTYPPPPWAA 300
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 32.3 bits (72), Expect = 0.25
Identities = 33/128 (25%), Positives = 43/128 (32%), Gaps = 1/128 (0%)
Frame = +3
Query: 393 PSVNNQPTNVAVPNSP-LSPQFQQQQTFISQGVYYPNGSMPSVGSPQYEQSRYAQSTGPA 451
P N N+ P P L+ F S +P S+PS S + T P
Sbjct: 90 PPSPNHRNNLPPPFPPSLTTSFST-----SSPASHPLPSLPSPSSAAVGPTSSTPPTSPT 254
Query: 452 WNGQAAQQQQPPSPVNGAQSGGSFPPPPWEAQAAENGSPVAGNQYPQPLQVTQMVVTHVQ 511
A PPSP S PPPP + NG+P + + P +
Sbjct: 255 SAAAATSSATPPSPSPPPTSAS--PPPP---SSTPNGTPPSSSPATTPSPSRPSTPSSPT 419
Query: 512 GAPLPQGP 519
A LP P
Sbjct: 420 RASLPSAP 443
>TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precursor,
partial (43%)
Length = 1038
Score = 32.0 bits (71), Expect = 0.32
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Frame = +2
Query: 380 LVLFDMFSNGSNAPSVNNQPTNVAVPNSPLSPQFQQQQTFISQGVYYP---NGSMPSVGS 436
L+ + S G+ +PS N PT P +P +PQ Q+ P S P +
Sbjct: 152 LICIVIASVGAQSPS--NSPTTSPAPPTPTTPQPPAAQSSPPPAQSSPPPVQSSPPPAST 325
Query: 437 PQYEQSRYAQSTGPAWNGQAAQQQQPPSPVNGAQSGGSFPPPPWEAQAAENGSPVA 492
P QS S P + Q PP+P A + PPP+ A P A
Sbjct: 326 PPPAQS----SPPPVSSPPPVQSTPPPAP---ASTPPPASPPPFSPPPATPPPPAA 472
Score = 28.5 bits (62), Expect = 3.6
Identities = 22/82 (26%), Positives = 29/82 (34%), Gaps = 3/82 (3%)
Frame = +2
Query: 421 SQGVYYPNGS---MPSVGSPQYEQSRYAQSTGPAWNGQAAQQQQPPSPVNGAQSGGSFPP 477
S G P+ S P+ +P Q AQS+ P Q P P + S PP
Sbjct: 173 SVGAQSPSNSPTTSPAPPTPTTPQPPAAQSSPPPAQSSPPPVQSSPPPASTPPPAQSSPP 352
Query: 478 PPWEAQAAENGSPVAGNQYPQP 499
P ++ P A P P
Sbjct: 353 PVSSPPPVQSTPPPAPASTPPP 418
>TC9168 similar to GB|AAP21369.1|30102902|BT006561 At4g19200 {Arabidopsis
thaliana;}, partial (12%)
Length = 682
Score = 31.2 bits (69), Expect = 0.55
Identities = 33/127 (25%), Positives = 42/127 (32%), Gaps = 15/127 (11%)
Frame = +2
Query: 388 NGSNAPSVNNQPTNVAVPNSPLSPQFQQQQTFISQGVYY--PNGSMPSVGSPQYEQSRYA 445
N +N P + VP + + Q G Y P PS P Y QS+
Sbjct: 5 NAANYPPQGAPQSGYGVPPTSQAAYGNPPQVQSGYGAGYGPPQAQKPSGTPPVYGQSQSP 184
Query: 446 QSTG------------PAWNGQAAQQQ-QPPSPVNGAQSGGSFPPPPWEAQAAENGSPVA 492
+TG P + G PP G QSG + PP + GS
Sbjct: 185 NTTGGYGQTGGYPPSHPPYGGAVQPGYGAPPYGAPGGQSGYAQAPPTY-------GSSAY 343
Query: 493 GNQYPQP 499
G YP P
Sbjct: 344 GAGYPPP 364
Score = 28.9 bits (63), Expect = 2.7
Identities = 26/97 (26%), Positives = 34/97 (34%), Gaps = 3/97 (3%)
Frame = +2
Query: 411 PQFQQQQTFISQGVYYPNGSMPSVGSPQ--YEQSRYAQSTGPAWNGQAAQQQQPPSPVNG 468
P + Q Q+ + G Y G P P Q Y A GQ+ Q PP+ +
Sbjct: 158 PVYGQSQSPNTTGGYGQTGGYPPSHPPYGGAVQPGYGAPPYGAPGGQSGYAQAPPTYGSS 337
Query: 469 AQSGGSFPPPPWEAQA-AENGSPVAGNQYPQPLQVTQ 504
A G PP + A G G+ P Q Q
Sbjct: 338 AYGAGYPPPSAYSGDGNAGEGGNTRGSNDGAPAQAVQ 448
>TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
precursor , partial (81%)
Length = 1355
Score = 31.2 bits (69), Expect = 0.55
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +2
Query: 427 PNGSMPSVG----SPQYEQSRYAQSTGPAWNGQAAQQQQPPSPVNGAQSGGSFPPPPWEA 482
PN S+PS S +R + ++ PAW+ +A PPS + S SF PP
Sbjct: 371 PNPSVPSPSPKTTSRDSPPTRPSTTSSPAWSSASAPAPPPPS---SSPSSASFSPPANSP 541
Query: 483 QAAENGSPVAGNQYPQP 499
++ + P A P
Sbjct: 542 TSSASPPPSARRSRRDP 592
>BP043696
Length = 470
Score = 31.2 bits (69), Expect = 0.55
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = -2
Query: 426 YPNGSMPSVGSPQYEQSRYAQSTGPAWNGQAAQQQ-QPPSPVNGAQSGGSFPPPPWEAQA 484
YP S P+ S Q++ P + PPS + S + PPPPW++
Sbjct: 412 YPQRSQPAPPYHAQAPSSQKQNS*PLQKRRRTTTTGTPPSEPSRTLSRRNPPPPPWKSPR 233
Query: 485 AENGSPVAGNQYPQPLQVTQ 504
A P Y P + Q
Sbjct: 232 ARRAKPSPHASYTPPRKALQ 173
>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
Length = 1751
Score = 30.8 bits (68), Expect = 0.72
Identities = 30/113 (26%), Positives = 39/113 (33%), Gaps = 18/113 (15%)
Frame = +2
Query: 549 SNQFGMHPQYAQGVAASPYMGMVPHQMQNGPVAHP-------MYAQQMYG----NQYMGG 597
SNQ G P A G ASP G +P + P +P + Q G N GG
Sbjct: 836 SNQGGFPPNNAGGYPASPRPGNMPGPPPSNPGGYPPNNQAGGYHPQNQAGGYPPNSQAGG 1015
Query: 598 Y-------GYGQQPQQGVQYVEQQMHGLSMSDDRNSSYVPPKKPSKPEDKLFG 643
Y GY Q GV Y + + + PP P + +G
Sbjct: 1016YPPNSQAGGYPPNSQAGV-YPPNNQGVYPPNQNNYAGRTPPNVGGAPPNSAYG 1171
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.130 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,739,035
Number of Sequences: 28460
Number of extensions: 160031
Number of successful extensions: 943
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of query: 658
length of database: 4,897,600
effective HSP length: 96
effective length of query: 562
effective length of database: 2,165,440
effective search space: 1216977280
effective search space used: 1216977280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0487.5