BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0476b.8
(997 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF177549 45 4e-05
TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinog... 37 0.012
TC12599 similar to AAR18374 (AAR18374) Nucleobase-ascorbate tran... 35 0.077
BP034655 35 0.077
TC14296 similar to GB|AAM47342.1|21360453|AY113034 AT3g02540/F16... 34 0.10
AI967687 33 0.22
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 33 0.22
TC8093 homologue to UP|EFTU_TOBAC (P41342) Elongation factor Tu,... 33 0.29
TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic me... 33 0.29
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 33 0.29
BP031757 32 0.50
TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28... 32 0.50
TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete 32 0.65
TC18849 32 0.65
TC9284 weakly similar to UP|Q9LPY0 (Q9LPY0) T23J18.22, partial (... 31 0.85
TC14669 similar to PIR|E86326|E86326 protein F18O14.3 [imported]... 31 0.85
TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%) 31 0.85
TC19662 homologue to GB|CAA65987.2|6015604|PSRPL9PRT ribosomal p... 31 0.85
TC8468 similar to UP|BRU1_SOYBN (P35694) Brassinosteroid-regulat... 31 1.1
CN825601 30 1.4
>BF177549
Length = 440
Score = 45.4 bits (106), Expect = 4e-05
Identities = 21/23 (91%), Positives = 23/23 (99%)
Frame = +2
Query: 975 ESSSKMEAIMKYLMENLPSSSKP 997
ESSSKMEAIMKYLM+NLPS+SKP
Sbjct: 14 ESSSKMEAIMKYLMDNLPSTSKP 82
>TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (43%)
Length = 890
Score = 37.4 bits (85), Expect = 0.012
Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
Frame = +2
Query: 508 QASESASEVQRERRSKRTSDP-ARAVQLTRTSPIRSHAKVITESINSDSALVVVPEQPLP 566
Q S SA + R R + +S P Q TSP S + T S + P P P
Sbjct: 143 QCSCSARQPWRLSRQRCSSSPWLLPPQTPTTSPAFSPS---TPSSPPSTTTSPSPTSP-P 310
Query: 567 ISTSMPTLTQTAPTQPETQTHTQAEHQAPISTIQTATTDIPSIPIYTSSTSIPTEPVPP 625
ST+ P T P T +Q HQ+P S + +T + SST PT P P
Sbjct: 311 RSTNGPQSPSAPSTTPPWTTSSQNTHQSPPSRTSSPSTSSSTTSAPRSSTRSPTAPPSP 487
>TC12599 similar to AAR18374 (AAR18374) Nucleobase-ascorbate transporter 12,
partial (6%)
Length = 527
Score = 34.7 bits (78), Expect = 0.077
Identities = 19/52 (36%), Positives = 24/52 (45%)
Frame = -1
Query: 561 PEQPLPISTSMPTLTQTAPTQPETQTHTQAEHQAPISTIQTATTDIPSIPIY 612
P +PL T PT QP TH+ ++ QAP Q T IP +P Y
Sbjct: 158 PTKPLSF-TGQPTSPIGKSYQPSRATHSHSQQQAPF*QHQVLTKHIPHVPAY 6
>BP034655
Length = 517
Score = 34.7 bits (78), Expect = 0.077
Identities = 20/72 (27%), Positives = 35/72 (47%)
Frame = +1
Query: 417 MSDSESSEDTWEDFSSEETEDEDRPLAKRRKIILEEEEDEQDDHEIIQNVIQGIRDSSEA 476
+SD + E+ E+ EE E+E+ + +EE+DE+D+ E V R S
Sbjct: 130 LSDDDEEEEEEEEEEEEEEEEEEEEEEEEE----DEEDDEEDEDEDYIPVAPSHRVSPNV 297
Query: 477 EESTDSDEVHLV 488
++ SD V ++
Sbjct: 298 HQNPTSDSVEVI 333
>TC14296 similar to GB|AAM47342.1|21360453|AY113034 AT3g02540/F16B3_17
{Arabidopsis thaliana;}, partial (76%)
Length = 1567
Score = 34.3 bits (77), Expect = 0.10
Identities = 29/121 (23%), Positives = 53/121 (42%), Gaps = 4/121 (3%)
Frame = +1
Query: 510 SESASEVQRERRSKRTSD--PARAVQLTRTSPIRSHAKVITESINSDSALVVVPEQPLPI 567
S++ SEV++ + + +D PA L + + E+ ++++ +V+
Sbjct: 187 SDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTKS 366
Query: 568 STSMPTLTQTAPTQPETQTHT--QAEHQAPISTIQTATTDIPSIPIYTSSTSIPTEPVPP 625
S+ + T TAP TQT + +P TAT D+P+ ++ PT P P
Sbjct: 367 SSGEGSTTSTAPLAKVTQTSAAPTSTSVSPAPQTPTATRDMPTPVTVPAAAPAPT-PAPA 543
Query: 626 L 626
L
Sbjct: 544 L 546
>AI967687
Length = 460
Score = 33.1 bits (74), Expect = 0.22
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 1 MGKSRKPKANVSAATTQTAKDQEKQ 25
MGKSRK K NV+A++ T ++QEKQ
Sbjct: 386 MGKSRKSKTNVTASSKLTDEEQEKQ 460
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 33.1 bits (74), Expect = 0.22
Identities = 31/116 (26%), Positives = 54/116 (45%), Gaps = 22/116 (18%)
Frame = +3
Query: 526 SDPARAVQLTRTSPIRSHAKVI------TESINSDSALVVVPEQP-------LPISTSMP 572
+ P+ +Q++ TS S A ++ T S +S S L+ +P LP+ S
Sbjct: 213 TSPSLLLQISPTSISISTASILLQKSSSTISHSSSSLLLQIPSTTNVISSTSLPLCESSS 392
Query: 573 TLTQTAPT---------QPETQTHTQAEHQAPISTIQTATTDIPSIPIYTSSTSIP 619
TLT ++PT P + +H + +P S I T T IP++ +++S+P
Sbjct: 393 TLTISSPTIPLCITTSSFPISSSHIHLQITSPTSKIATTT-----IPLHITTSSLP 545
>TC8093 homologue to UP|EFTU_TOBAC (P41342) Elongation factor Tu,
chloroplast precursor (EF-Tu), partial (58%)
Length = 1146
Score = 32.7 bits (73), Expect = 0.29
Identities = 28/93 (30%), Positives = 41/93 (43%), Gaps = 2/93 (2%)
Frame = +2
Query: 564 PLPISTSMPTLTQTAPTQPETQTHTQAEHQAPISTIQTATTDIPSIPIYTSSTSIPTEPV 623
P P ST+ P + +AP + AP +T +TT P P + S+P+E
Sbjct: 275 PPPPSTAAPPPSPSAPLAASSSARNPMSTSAPSAT---STTAKPPSPPPSPWPSLPSETA 445
Query: 624 PPLNSFIQGIIQSEATLKT--LVQQFTSKPAST 654
PP N+ +S LK+ V T P+ST
Sbjct: 446 PPRNT-----TKSTPPLKSALAVSPSTPPPSST 529
>TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic membrane
protein 1, complete
Length = 1149
Score = 32.7 bits (73), Expect = 0.29
Identities = 31/125 (24%), Positives = 50/125 (39%)
Frame = +1
Query: 504 TVAEQASESASEVQRERRSKRTSDPARAVQLTRTSPIRSHAKVITESINSDSALVVVPEQ 563
TVA + SA+ R + T P L+ + P +S S+ VPE
Sbjct: 58 TVAGRRCRSATSPSVPLRRQPTQTP*GQPWLSSSPP------------SSSSSPAPVPES 201
Query: 564 PLPISTSMPTLTQTAPTQPETQTHTQAEHQAPISTIQTATTDIPSIPIYTSSTSIPTEPV 623
P S + A + P + TH+ + +P + A T P P ++S+S T P
Sbjct: 202 PTTNSPTTAPPPPPASSPPPSPTHSPSSSPSPSAPTSPAATSTPPSP--SASSSAVTSPS 375
Query: 624 PPLNS 628
++S
Sbjct: 376 SAVSS 390
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 32.7 bits (73), Expect = 0.29
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 412 TQQQQMSDSESSEDTWEDFSSEETEDEDRPLAKRRKIILEEEEDEQDDHE 461
T + + SD E E+ ED +E ED+D EEEED+ DD E
Sbjct: 737 TGEAEQSDFEDIEEDDEDGDEDEDEDDDDD---------EEEEDDDDDDE 859
>BP031757
Length = 507
Score = 32.0 bits (71), Expect = 0.50
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 400 EASSERSLKRTSTQQQQMSDSESSEDTWEDFSSEETEDEDRPLAKRRKIILEEEEDEQDD 459
E + + LK ++ ++ + ++ + ED+ EE E + K RK EEEE+EQ++
Sbjct: 107 EETPPQQLKPRKRKRMKLLEEDNEDKDGEDYEEEE---EKKKKKKSRKKKEEEEEEEQEE 277
Query: 460 HE 461
E
Sbjct: 278 PE 283
>TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28040
{Arabidopsis thaliana;}, partial (8%)
Length = 937
Score = 32.0 bits (71), Expect = 0.50
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Frame = -3
Query: 414 QQQMSDSESSEDTWEDFSSEETEDEDRPLAKRRKIILEEEEDEQDDHEIIQNVIQGIRDS 473
Q+Q S + SSE E++D+PL++ + EEEE ++ +G +
Sbjct: 884 QKQKRPSPLEDPPTASSSSESEEEDDQPLSQVKHAAAEEEELSSEE--------EGSSEE 729
Query: 474 SEAEEST-DSDEVHLVRRRKLPLKGPLQQKETVAEQASESASEVQRERRSKRTSDP 528
E +E+T + K P P T ++ S++ S+ Q S T +P
Sbjct: 728 EEEDETTAPAPPAATTSHTKPPQPEPESDSATQSDSESDTDSD-QAPSASAPTPNP 564
>TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete
Length = 1064
Score = 31.6 bits (70), Expect = 0.65
Identities = 50/228 (21%), Positives = 91/228 (38%), Gaps = 15/228 (6%)
Frame = +3
Query: 328 ACILEYVRMLRRQGDPITLTEFVNTLPESPPKLTTRKSRR---ATSSKPSDPKGKGILIE 384
A +LE V RR G I + L + P L RR T+++P+ KG +
Sbjct: 42 AGLLERVPCRRRSGSLIA-----SHLLSTKPFLLLHYRRRLKMTTAARPTWAPAKGGNEQ 206
Query: 385 EPAKKKAASKTVIIREASSERSLKRTSTQQQQMSD-------SESSEDTWEDFSSE-ETE 436
+ S+ R+ +S +LK Q + E E FSS+ ++
Sbjct: 207 GGTRIFGPSQKYSSRDIASHTTLKPRRDGQDTQDELKRRNLRDELEERERRHFSSKNKSY 386
Query: 437 DEDRPLAKRRKIILEEEEDEQDDHEIIQNVIQGIRD----SSEAEESTDSDEVHLVRRRK 492
+DR K + LE + + +DH + ++V D S E + D DE
Sbjct: 387 SDDRDHGKSSHLFLEGTKRDVEDHIVARSVDADDSDVEVKSDEESDDDDDDED------- 545
Query: 493 LPLKGPLQQKETVAEQASESASEVQRERRSKRTSDPARAVQLTRTSPI 540
+ L + E + ++ +E ++++ER + + +L R +P+
Sbjct: 546 -DTEALLAELEQIKKERAE--EKLRKERLEQEEELKVKEAELLRGNPL 680
>TC18849
Length = 770
Score = 31.6 bits (70), Expect = 0.65
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = -2
Query: 561 PEQPLPISTSMPTLTQTAPTQPETQTHTQAEHQAPISTIQTATTDIPSIPIYTSSTSIPT 620
PEQP+P T+ L+ +P P T A P S A T P P
Sbjct: 553 PEQPVPAMTACMYLSGNSPAAPTIDPCTNAS-ATPASATAPAVT*KP-----------PY 410
Query: 621 EPVPPL--NSFIQGIIQSEATLK 641
P PL N+ I+G SE T K
Sbjct: 409 NPTRPLM*NASIRGTTSSETTNK 341
>TC9284 weakly similar to UP|Q9LPY0 (Q9LPY0) T23J18.22, partial (33%)
Length = 898
Score = 31.2 bits (69), Expect = 0.85
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 13/139 (9%)
Frame = +1
Query: 543 HAKVITESINSDSALVVVPEQPLP-----ISTSMPTLTQTAPTQPETQTHTQAEHQAPIS 597
H +++ ++ + P P P ST+ P+ + P++P T + + P+S
Sbjct: 127 HRILLSTPTTTNESASFSPSNPDPNPASSASTTKPSAATSPPSKPHAPTPSSSS-STPLS 303
Query: 598 TIQTATTDIPSIPIYTSST---SIPTEPVPPLNSFIQGIIQSEATLKTLVQQFTSKPAS- 653
+ + PS + S+ S PT P PP + I S ATL + + S ++
Sbjct: 304 STTNPNSASPSFATSSPSSPPPSSPTTPTPPHSR-----ISSSATLNSRNRSLVSPNSAS 468
Query: 654 ----TPHTFLITQTGEIPA 668
T ++++T P+
Sbjct: 469 MLSPTSASWVLTTVSRTPS 525
>TC14669 similar to PIR|E86326|E86326 protein F18O14.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(77%)
Length = 1120
Score = 31.2 bits (69), Expect = 0.85
Identities = 23/83 (27%), Positives = 35/83 (41%), Gaps = 17/83 (20%)
Frame = -3
Query: 576 QTAPTQPETQTH------TQAEHQAPISTIQTA-----------TTDIPSIPIYTSSTSI 618
QT P P QTH QAE Q+ +S +Q + + S +T +
Sbjct: 449 QTLPNHP*IQTHDEQRDSVQAEEQSQVSDLQDGAGY*HRE*ILISGQMMSFLSHTREPTS 270
Query: 619 PTEPVPPLNSFIQGIIQSEATLK 641
P +PVP + + ++EAT K
Sbjct: 269 PLQPVPCTPGILVTVSENEATCK 201
>TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%)
Length = 1196
Score = 31.2 bits (69), Expect = 0.85
Identities = 24/92 (26%), Positives = 47/92 (51%)
Frame = +2
Query: 401 ASSERSLKRTSTQQQQMSDSESSEDTWEDFSSEETEDEDRPLAKRRKIILEEEEDEQDDH 460
+ SE S+ T + ++ S+ S + D SS ++E+E R +RRK ++++ +
Sbjct: 659 SDSEDSVFETESGSSSVTGSDYSSGSSSDSSSSDSEEERR---RRRKKKTQKKKKGRRHK 829
Query: 461 EIIQNVIQGIRDSSEAEESTDSDEVHLVRRRK 492
+ + +SS++E ++DSD RRK
Sbjct: 830 KYSSS-----SESSDSESASDSDSDDKSSRRK 910
>TC19662 homologue to GB|CAA65987.2|6015604|PSRPL9PRT ribosomal protein L9
{Pisum sativum;} , partial (75%)
Length = 507
Score = 31.2 bits (69), Expect = 0.85
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 9/128 (7%)
Frame = +2
Query: 506 AEQASESASEVQRERRSKR----TSDPARAVQLT-RTSPIRSHAKVITESINSDSALVVV 560
+E+ E +Q+ RRS TS A A + T R S +++HA + S+ S + +
Sbjct: 20 SERKREKPPPLQK*RRSSHQRPWTSPTA*ASRFTPR*SRLKAHAA--SSSVTSSISTSIS 193
Query: 561 PEQPLPI----STSMPTLTQTAPTQPETQTHTQAEHQAPISTIQTATTDIPSIPIYTSST 616
P+ S S P P P +P+S TAT S+PI+ S
Sbjct: 194 SSSPMRTARRSSRSRPGSPPARPPPPSAPHSAMLTTSSPVSPRGTATR*GSSMPIFLSML 373
Query: 617 SIPTEPVP 624
+ P P
Sbjct: 374 ASPMTTKP 397
>TC8468 similar to UP|BRU1_SOYBN (P35694) Brassinosteroid-regulated protein
BRU1 precursor , partial (93%)
Length = 1023
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/78 (32%), Positives = 36/78 (46%)
Frame = +3
Query: 584 TQTHTQAEHQAPISTIQTATTDIPSIPIYTSSTSIPTEPVPPLNSFIQGIIQSEATLKTL 643
T H + +H + T + IPI+ + TS P NSF G+ E + TL
Sbjct: 288 TTCHPKGQHMMKLILSSWET*VV--IPIFFTQTSSPKAEETENNSFTSGLTPQETS--TL 455
Query: 644 VQQFTSKPASTPHTFLIT 661
Q F S AST +++ IT
Sbjct: 456 TQSFGS--ASTSYSWWIT 503
>CN825601
Length = 717
Score = 30.4 bits (67), Expect = 1.4
Identities = 38/158 (24%), Positives = 68/158 (42%), Gaps = 19/158 (12%)
Frame = +1
Query: 420 SESSEDTWEDFSSEETED---EDRPLAKRRKIILE--EEEDEQDDHEIIQNVIQGIRDSS 474
S SS DFS+ ED E AKRR+++L +++D++ I ++ +G+ D +
Sbjct: 184 SFSSPHQETDFSTGYLEDALVEFGERAKRRRLLLPCIDDDDDRSKSSSIDDLEKGLWDFN 363
Query: 475 --------------EAEESTDSDEVHLVRRRKLPLKGPLQQKETVAEQASESASEVQRER 520
+ E + H+ R + P + +T E+ SA+E
Sbjct: 364 PTWHQPVENLYCMDQIERICGFSDEHISTFRSRISEEPNIETKTTEEETM-SATESPNSS 540
Query: 521 RSKRTSDPARAVQLTRTSPIRSHAKVITESINSDSALV 558
S +P + +T+ I+ + +VIT S+ ALV
Sbjct: 541 SSSYKEEPVTS----KTTEIQQNKRVITRSVVYPFALV 642
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.127 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,892,222
Number of Sequences: 28460
Number of extensions: 175531
Number of successful extensions: 1209
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of query: 997
length of database: 4,897,600
effective HSP length: 99
effective length of query: 898
effective length of database: 2,080,060
effective search space: 1867893880
effective search space used: 1867893880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0476b.8