TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476b.5
         (58 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE122510                                                               32  0.025
TC17306 similar to UP|Q42479 (Q42479) Calcium-dependent protein ...    27  0.81
TC9373                                                                 25  2.4
BP038345                                                               25  3.1
TC18176 homologue to UP|AAP97495 (AAP97495) Cellulose synthase, ...    25  4.0
TC19128 homologue to PIR|S33512|S33512 tubulin alpha chain - Eug...    24  6.8
TC11991 similar to GB|AAM26699.1|20857097|AY102132 AT4g26670/F10...    23  8.9
TC8316 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Ara...    23  8.9

>BE122510 
          Length = 385

 Score = 32.0 bits (71), Expect = 0.025
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = -2

Query: 40  EYVLTCLTYQKAKVEAKDE 58
           EYV T LT QKAKVEAKDE
Sbjct: 369 EYVSTRLTCQKAKVEAKDE 313


>TC17306 similar to UP|Q42479 (Q42479) Calcium-dependent protein kinase
           CDPK6 (AT4g23650/F9D16_120) , partial (6%)
          Length = 511

 Score = 26.9 bits (58), Expect = 0.81
 Identities = 12/28 (42%), Positives = 15/28 (52%), Gaps = 3/28 (10%)
 Frame = +2

Query: 18  MTKMYQDLKL---HFWCPGMKKRVVEYV 42
           M  MY   K    HF CPGM + +V Y+
Sbjct: 410 MNAMYSCTKFLGRHFLCPGMLRNIVAYI 493


>TC9373 
          Length = 531

 Score = 25.4 bits (54), Expect = 2.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 28  HFWCPGMKKRVVEYVLTC 45
           +FWCP M   V+E V  C
Sbjct: 417 NFWCPNMMYSVLEEVKAC 470


>BP038345 
          Length = 528

 Score = 25.0 bits (53), Expect = 3.1
 Identities = 8/23 (34%), Positives = 13/23 (55%)
 Frame = +3

Query: 8   HKSRLSIHPGMTKMYQDLKLHFW 30
           HK  L  HP ++ +YQ  + + W
Sbjct: 264 HKQGLEFHPNLSSLYQRKQYYGW 332


>TC18176 homologue to UP|AAP97495 (AAP97495) Cellulose synthase, partial
           (22%)
          Length = 743

 Score = 24.6 bits (52), Expect = 4.0
 Identities = 8/23 (34%), Positives = 13/23 (55%)
 Frame = -3

Query: 8   HKSRLSIHPGMTKMYQDLKLHFW 30
           HK  L  HP ++ +YQ  + + W
Sbjct: 258 HKQDLECHPNLSSLYQRKQYYDW 190


>TC19128 homologue to PIR|S33512|S33512 tubulin alpha chain - Euglena
           gracilis {Euglena gracilis;} , partial (16%)
          Length = 494

 Score = 23.9 bits (50), Expect = 6.8
 Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
 Frame = -1

Query: 24  DLKLHFWCPGMKKRVVEYVLTCLTYQ-KAKVEAKD 57
           D KLH     M+KR+V  +LT  ++Q KA  + KD
Sbjct: 422 DSKLHLPPLFMRKRIVSRLLT*NSHQNKASTQQKD 318


>TC11991 similar to GB|AAM26699.1|20857097|AY102132 AT4g26670/F10M23_10
          {Arabidopsis thaliana;}, partial (17%)
          Length = 514

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 9/17 (52%), Positives = 12/17 (69%)
 Frame = +1

Query: 27 LHFWCPGMKKRVVEYVL 43
          LHF CPG + R + +VL
Sbjct: 31 LHFPCPGKQLRYIMHVL 81


>TC8316 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Arabidopsis
            thaliana;}, partial (63%)
          Length = 1796

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (56%)
 Frame = -1

Query: 21   MYQDLKLHFWCPGMKKRVVEYVLTCLTY 48
            M+  +K+H W P + K +     +CLTY
Sbjct: 1589 MH*KVKVHQWLPPILKTISPP*KSCLTY 1506


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,058,864
Number of Sequences: 28460
Number of extensions: 10196
Number of successful extensions: 60
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of query: 58
length of database: 4,897,600
effective HSP length: 34
effective length of query: 24
effective length of database: 3,929,960
effective search space: 94319040
effective search space used: 94319040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)