BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0476b.4
(341 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI420239 271 2e-73
TC18886 weakly similar to UP|Q8LDT8 (Q8LDT8) GDSL-motif lipase/h... 173 4e-44
AV429155 157 2e-39
TC18753 155 1e-38
TC13086 similar to UP|Q8LDT8 (Q8LDT8) GDSL-motif lipase/hydrolas... 143 4e-35
AV415524 133 5e-32
TC19930 weakly similar to UP|Q9AX26 (Q9AX26) GDSL-motif lipase/h... 118 1e-27
AV419166 117 3e-27
AV767701 106 5e-24
TC14230 102 1e-22
BP041040 101 2e-22
AU240152 99 8e-22
TC11616 similar to UP|Q9SVU5 (Q9SVU5) Proline-rich APG-like prot... 97 5e-21
BP040561 93 7e-20
BP034926 92 1e-19
TC8381 91 4e-19
AV416139 87 4e-18
AV419146 87 5e-18
AV425402 86 7e-18
BP040821 86 1e-17
>BI420239
Length = 621
Score = 271 bits (692), Expect = 2e-73
Identities = 136/207 (65%), Positives = 169/207 (80%)
Frame = +1
Query: 6 KTWLILSLVTVIVASIMQHSTVLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANFLSYGI 65
+T L+L+LV ++VA ++ + SQVPC+F+FGDSLSDSGN+NNL T AK ++L YGI
Sbjct: 1 RTLLVLALVILLVAIAIRQYCLQRNSQVPCLFIFGDSLSDSGNNNNLETDAKVDYLPYGI 180
Query: 66 DFPATFPTERYSNGRNPIDKIAQLLGFQTFIPPFANLNGSDILKGVNYASGSAGIRKESG 125
DFP T PT RY+NGRN IDKI +LLG + FIPPFANL+GSDILKGVNYASGSAGIRKESG
Sbjct: 181 DFP-TGPTGRYTNGRNAIDKITELLGLEDFIPPFANLSGSDILKGVNYASGSAGIRKESG 357
Query: 126 SQLGHNVNLGLQLLHHRAIVSCIAHKLGGLDKATQCLSQCLYYVNIDTNDFEQNYFLPNV 185
+ LG N+N+GLQ+ H AIVS I+ +L G KA + LS+CLYYVNI TND+EQNYFLP++
Sbjct: 358 TNLGTNINMGLQIYFHMAIVSQISARL-GFHKAKRHLSKCLYYVNIGTNDYEQNYFLPDL 534
Query: 186 FNTSRMYTPKQYAKVLIHQLSHYLQTL 212
F+TS YTP++YAK LI++LSHYLQ L
Sbjct: 535 FDTSSKYTPEEYAKDLINRLSHYLQIL 615
>TC18886 weakly similar to UP|Q8LDT8 (Q8LDT8) GDSL-motif
lipase/hydrolase-like protein, partial (23%)
Length = 547
Score = 173 bits (438), Expect = 4e-44
Identities = 92/139 (66%), Positives = 108/139 (77%), Gaps = 5/139 (3%)
Frame = +1
Query: 1 MGCESKTWLILSLVTVIVASIMQHSTVLGESQ-VPCIFVFGDSLSDSGNDNNLPTSAKAN 59
M CE K WL+LSLV ++ MQHS VLG SQ VPC+FVFGDSL+DSGN+NNLPT +KAN
Sbjct: 40 MACEIKAWLVLSLVLMVAC--MQHS-VLGNSQAVPCLFVFGDSLADSGNNNNLPTLSKAN 210
Query: 60 FLSYGIDFPATFPTERYSNGRNPIDKIAQLLGFQTFIPPFANLNGSDILKGVNYAS---- 115
FL YGIDFP T PT RY+NG NPIDK+AQ+LGF+ FIPPFANL+GSDILKGVNYAS
Sbjct: 211 FLPYGIDFP-TGPTGRYTNGLNPIDKLAQILGFEKFIPPFANLSGSDILKGVNYASAFSR 387
Query: 116 GSAGIRKESGSQLGHNVNL 134
SAG R + G + H + +
Sbjct: 388 NSAGNRNQFGYKCQHGITI 444
Score = 75.1 bits (183), Expect = 2e-14
Identities = 37/55 (67%), Positives = 43/55 (77%)
Frame = +2
Query: 117 SAGIRKESGSQLGHNVNLGLQLLHHRAIVSCIAHKLGGLDKATQCLSQCLYYVNI 171
SAGIR+E+G+ LG NVN+GLQL HHR IVS I+ KLGG KA L+QCLYYV I
Sbjct: 380 SAGIRQETGTNLGTNVNMGLQLQHHRTIVSQISTKLGGFHKAVNYLTQCLYYVYI 544
>AV429155
Length = 393
Score = 157 bits (398), Expect = 2e-39
Identities = 80/128 (62%), Positives = 102/128 (79%)
Frame = +3
Query: 1 MGCESKTWLILSLVTVIVASIMQHSTVLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANF 60
M CE+KTWL L L+ ++VA+ MQHS V G+ +VPC+F+FGDSLSD+GN+NNL TS K+N+
Sbjct: 18 MPCETKTWLFLPLL-LLVANCMQHS-VHGKPEVPCLFIFGDSLSDNGNNNNLVTSTKSNY 191
Query: 61 LSYGIDFPATFPTERYSNGRNPIDKIAQLLGFQTFIPPFANLNGSDILKGVNYASGSAGI 120
YGIDFP T PT R++NG +D I+QLLGF+ FIPPFAN + SDILKGVNYAS +AGI
Sbjct: 192 KPYGIDFP-TGPTGRFTNGPTTVDIISQLLGFENFIPPFANTSDSDILKGVNYASAAAGI 368
Query: 121 RKESGSQL 128
ESG+ +
Sbjct: 369 CVESGTHM 392
>TC18753
Length = 562
Score = 155 bits (391), Expect = 1e-38
Identities = 79/169 (46%), Positives = 113/169 (66%), Gaps = 2/169 (1%)
Frame = +3
Query: 13 LVTVIVASIMQHST--VLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANFLSYGIDFPAT 70
+V V++ + +T V E QVPC F FGDSL D+GN+N L + AKAN+ YGIDFP
Sbjct: 57 IVLVLIVCLWSTTTTGVGAEPQVPCFFSFGDSLVDNGNNNRLSSLAKANYRPYGIDFPGG 236
Query: 71 FPTERYSNGRNPIDKIAQLLGFQTFIPPFANLNGSDILKGVNYASGSAGIRKESGSQLGH 130
PT R+SNG+ +D I +LLGF ++IPP+A G DIL+GVNYAS +AGIR+E+G QLG
Sbjct: 237 -PTGRFSNGKTSVDVIGELLGFGSYIPPYATTRGQDILRGVNYASAAAGIREETGQQLGG 413
Query: 131 NVNLGLQLLHHRAIVSCIAHKLGGLDKATQCLSQCLYYVNIDTNDFEQN 179
++ Q+ +++ VS + + LG + A LS+C+Y + I +ND+ N
Sbjct: 414 RISFRGQVQNYQRTVSQLINLLGDENTAANYLSKCIYSIGIGSNDYLNN 560
>TC13086 similar to UP|Q8LDT8 (Q8LDT8) GDSL-motif lipase/hydrolase-like
protein, partial (35%)
Length = 524
Score = 143 bits (361), Expect = 4e-35
Identities = 70/149 (46%), Positives = 104/149 (68%), Gaps = 3/149 (2%)
Frame = +3
Query: 8 WLILSLVTVIVA---SIMQHSTVLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANFLSYG 64
W++++LV V++ + + V + QVPC F+FGDSL D+GN+N L + AKAN+L YG
Sbjct: 63 WIVMNLVAVVMVVCLGLWSTTRVGADPQVPCYFIFGDSLVDNGNNNQLNS*AKANYLPYG 242
Query: 65 IDFPATFPTERYSNGRNPIDKIAQLLGFQTFIPPFANLNGSDILKGVNYASGSAGIRKES 124
IDF PT R+SNG+ +D +A+LLGF ++IPP++ G DILKGVNYAS +AGIR+E+
Sbjct: 243 IDFGGG-PTGRFSNGKTTVDVVAELLGFDSYIPPYSTARGQDILKGVNYASAAAGIREET 419
Query: 125 GSQLGHNVNLGLQLLHHRAIVSCIAHKLG 153
G QLG ++ Q+ +++ VS + + LG
Sbjct: 420 GQQLGGRISFSGQVENYQRTVSQVVNLLG 506
>AV415524
Length = 411
Score = 133 bits (334), Expect = 5e-32
Identities = 61/136 (44%), Positives = 98/136 (71%)
Frame = +2
Query: 48 NDNNLPTSAKANFLSYGIDFPATFPTERYSNGRNPIDKIAQLLGFQTFIPPFANLNGSDI 107
++N L + A+A+++ YGIDFP P+ R+SNG+ +D IA+LLGF FIPP+ + +G DI
Sbjct: 2 SNNALRSLARADYMPYGIDFPGG-PSGRFSNGKTTVDVIAELLGFDDFIPPYVSTSGDDI 178
Query: 108 LKGVNYASGSAGIRKESGSQLGHNVNLGLQLLHHRAIVSCIAHKLGGLDKATQCLSQCLY 167
L+GVN+AS +AGIR+E+G QLG ++ Q+ ++++ VS + + LG D+A LS+C+Y
Sbjct: 179 LRGVNFASAAAGIREETGQQLGGRISFSGQVQNYQSTVSQVVNILGNEDQAANYLSKCIY 358
Query: 168 YVNIDTNDFEQNYFLP 183
+ + +ND+ NYF+P
Sbjct: 359 SIGLGSNDYLNNYFMP 406
>TC19930 weakly similar to UP|Q9AX26 (Q9AX26) GDSL-motif
lipase/hydrolase-like protein, partial (11%)
Length = 329
Score = 118 bits (296), Expect = 1e-27
Identities = 58/99 (58%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Frame = +2
Query: 1 MGCESKTWLILSLVTVIVASIMQHSTVLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANF 60
M C KTWLI++LV ++VA + V +QVPC+FVFGDSLSDSGN+NNL T AK +
Sbjct: 32 MACGIKTWLIIALVVLLVAIAIMQIFVQRNTQVPCLFVFGDSLSDSGNNNNLETLAKVAY 211
Query: 61 LSYGIDFP-ATFPTERYSNGRNPIDKIAQLLGFQTFIPP 98
YGIDFP PT RYSNGR +DK+ +LLGF+ FIPP
Sbjct: 212 PPYGIDFPTGPTPTGRYSNGRTAVDKLTELLGFEDFIPP 328
>AV419166
Length = 270
Score = 117 bits (293), Expect = 3e-27
Identities = 52/68 (76%), Positives = 61/68 (89%)
Frame = +3
Query: 164 QCLYYVNIDTNDFEQNYFLPNVFNTSRMYTPKQYAKVLIHQLSHYLQTLYHFGARKSVLV 223
QCLYYV I TND+EQNYFLP++FNTSR YTP+QYAKVL HQLSHYL+ L+H GARK+V+V
Sbjct: 3 QCLYYVYIGTNDYEQNYFLPDLFNTSRTYTPEQYAKVLTHQLSHYLKALHHVGARKTVVV 182
Query: 224 GLDRLGCV 231
LDRLGC+
Sbjct: 183 SLDRLGCI 206
Score = 33.5 bits (75), Expect = 0.053
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 196 QYAKVLIHQLSHYLQTLYHFGARKSVLVGLDRLGC-VRI**VAFQSSW*MDLVLRRRMLP 254
Q A+ + +L T Y R +++G +R V I *VAFQ *MDL L+ +MLP
Sbjct: 76 QAARTPPSSMPKFLLTSYLII*RLFIMLGQERPWW*VWIA*VAFQRFL*MDLALKSKMLP 255
Query: 255 YSFLM 259
+ FLM
Sbjct: 256 HFFLM 270
>AV767701
Length = 622
Score = 106 bits (265), Expect = 5e-24
Identities = 66/195 (33%), Positives = 104/195 (52%), Gaps = 7/195 (3%)
Frame = +3
Query: 10 ILSLVTVIVASIMQHSTVLGESQVP------CIFVFGDSLSDSGNDNNLPTSAKANFLSY 63
++ ++ V+V I + +S P FVFGDSL DSGN+N L T+A+A+ Y
Sbjct: 39 LVIILLVVVGVIFPGAEAKSKSSKPKPKPSRAFFVFGDSLVDSGNNNYLATTARADSPPY 218
Query: 64 GIDFPATFPTERYSNGRNPIDKIAQLLGFQTFIPPFA-NLNGSDILKGVNYASGSAGIRK 122
GID+P PT R+SNG N D I+Q LG ++ +P + L G+ +L G N+AS GI
Sbjct: 219 GIDYPTRRPTGRFSNGLNIPDLISQQLGAESVLPYLSPQLRGNKLLLGANFASAGIGILN 398
Query: 123 ESGSQLGHNVNLGLQLLHHRAIVSCIAHKLGGLDKATQCLSQCLYYVNIDTNDFEQNYFL 182
++G+Q + + + QL + +A ++ G+ K + + L + + NDF NY+L
Sbjct: 399 DTGTQFLNIIRMYRQLDYFEEYQHRLASQI-GVTKTKALVDKALVLITVGGNDFVNNYYL 575
Query: 183 PNVFNTSRMYTPKQY 197
SR Y+ Y
Sbjct: 576 VPYSARSRQYSLPDY 620
>TC14230
Length = 740
Score = 102 bits (253), Expect = 1e-22
Identities = 69/199 (34%), Positives = 105/199 (52%), Gaps = 3/199 (1%)
Frame = +1
Query: 10 ILSLVTVIVASIM--QHSTVLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANFLSYGIDF 67
I SLV V+ S + QH+ FVFGDSL DSGN++ L T+A+A+ YGIDF
Sbjct: 79 ITSLVLVLFLSSVSAQHTRAF--------FVFGDSLVDSGNNDFLATTARADAPPYGIDF 234
Query: 68 PATFPTERYSNGRNPIDKIAQLLGFQTFIPPFAN-LNGSDILKGVNYASGSAGIRKESGS 126
P PT R+SNG N D I+ LG + +P + L G +L G N+AS GI ++G
Sbjct: 235 PTHRPTGRFSNGLNIPDLISLELGLEPTLPYLSPLLVGEKLLIGANFASAGIGILNDTGI 414
Query: 127 QLGHNVNLGLQLLHHRAIVSCIAHKLGGLDKATQCLSQCLYYVNIDTNDFEQNYFLPNVF 186
Q H +++ QL + ++ + G + +++ L+ + + NDF NY+L
Sbjct: 415 QFLHIIHIEKQLKLFQQYQKRVSAHI-GREGTRNLVNRALFLITLGGNDFVNNYYLVPYS 591
Query: 187 NTSRMYTPKQYAKVLIHQL 205
SR Y+ Y + +I +L
Sbjct: 592 ARSRQYSLPDYVRYIISEL 648
>BP041040
Length = 550
Score = 101 bits (252), Expect = 2e-22
Identities = 62/168 (36%), Positives = 92/168 (53%), Gaps = 2/168 (1%)
Frame = +3
Query: 16 VIVASIMQHSTVLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANFLSYGIDFPATFPTER 75
+ + I H + +VP I VFGDS DSGN+N +PT AK+NF YG DFP PT R
Sbjct: 27 LFLIEIFLHISTSSSGKVPAIIVFGDSSVDSGNNNFIPTMAKSNFEPYGRDFPDGNPTGR 206
Query: 76 YSNGRNPIDKIAQLLGFQTFIPPFAN--LNGSDILKGVNYASGSAGIRKESGSQLGHNVN 133
+SNGR D I++ G + IP + + + SD GV +AS G S S + +
Sbjct: 207 FSNGRIAPDFISEAFGLKPTIPAYLDPAYSISDFASGVCFASAGTGY-DNSTSNVADVIP 383
Query: 134 LGLQLLHHRAIVSCIAHKLGGLDKATQCLSQCLYYVNIDTNDFEQNYF 181
L ++ +++ + LG +KA + + + LY V+I TNDF +NY+
Sbjct: 384 LWKEVEYYKDYRQKLVAYLGD-EKANEIVKEALYLVSIGTNDFLENYY 524
>AU240152
Length = 300
Score = 99.4 bits (246), Expect = 8e-22
Identities = 50/84 (59%), Positives = 64/84 (75%)
Frame = +1
Query: 9 LILSLVTVIVASIMQHSTVLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANFLSYGIDFP 68
+++ + ++VA MQHS V GE +VPC+F+FGDSLSD GN+NNLPTS K+N+ YGIDFP
Sbjct: 55 MVVLPLLLLVAKSMQHS-VHGEPEVPCLFIFGDSLSDDGNNNNLPTSTKSNYNPYGIDFP 231
Query: 69 ATFPTERYSNGRNPIDKIAQLLGF 92
T PT R++NG ID I QLLGF
Sbjct: 232 -TGPTGRFTNGPTAIDIIGQLLGF 300
>TC11616 similar to UP|Q9SVU5 (Q9SVU5) Proline-rich APG-like protein,
partial (41%)
Length = 569
Score = 96.7 bits (239), Expect = 5e-21
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 1/171 (0%)
Frame = +2
Query: 12 SLVTVIVASIMQHSTVLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANFLSYGIDFPATF 71
SL IV + S G FVFGDSL D+GN+N L T+A+A+ YGID P
Sbjct: 59 SLACYIVLVVALASGFRGAEAARAFFVFGDSLVDNGNNNYLATTARADSPPYGIDTPNGR 238
Query: 72 PTERYSNGRNPIDKIAQLLGFQTFIPPFA-NLNGSDILKGVNYASGSAGIRKESGSQLGH 130
PT R+SNGRN D I++ LG + +P + LNG ++L G N+AS GI ++G Q +
Sbjct: 239 PTGRFSNGRNIPDFISEQLGAEPTLPYLSPELNGDNLLVGANFASAGIGILNDTGIQFIN 418
Query: 131 NVNLGLQLLHHRAIVSCIAHKLGGLDKATQCLSQCLYYVNIDTNDFEQNYF 181
+ + QL + ++ L G ++ + ++ L + + NDF NY+
Sbjct: 419 IIRIFRQLEYFDEYQQRVS-ALIGPEETQRLVNGALVLITLGGNDFVNNYY 568
>BP040561
Length = 515
Score = 92.8 bits (229), Expect = 7e-20
Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 1/168 (0%)
Frame = +1
Query: 16 VIVASIMQHSTVLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANFLSYGIDFPATFPTER 75
VIV S+ + +Q FVFGDSL D+GN++ L T+A+A+ YGIDFP PT R
Sbjct: 22 VIVTSLFM---AVDSTQTRAFFVFGDSLVDNGNNDFLATTARADAPPYGIDFPTHKPTGR 192
Query: 76 YSNGRNPIDKIAQLLGFQTFIPPFAN-LNGSDILKGVNYASGSAGIRKESGSQLGHNVNL 134
+SNG N D I++ LG + +P + L G +L G N+AS GI ++G Q + +++
Sbjct: 193 FSNGLNIPDLISEQLGLEPTMPYLSPLLMGEKLLVGANFASAGIGILNDTGFQFLNIIHM 372
Query: 135 GLQLLHHRAIVSCIAHKLGGLDKATQCLSQCLYYVNIDTNDFEQNYFL 182
QL + ++ ++G + + +++ L + + NDF NY+L
Sbjct: 373 YKQLKLFQHYQQRLSAQIGP-EGTKKLVNKALVLITLGGNDFVNNYYL 513
>BP034926
Length = 607
Score = 92.0 bits (227), Expect = 1e-19
Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Frame = +2
Query: 30 ESQVPCIFVFGDSLSDSGNDNNLPTSAKANFLSYGIDFPATFPTERYSNGRNPIDKIAQL 89
+S V CI VFGDS D GN+N L TS K+NF YG DF + PT R+ NGR D IA+
Sbjct: 158 KSNVSCILVFGDSSVDPGNNNVLRTSMKSNFPPYGKDFFNSLPTGRFCNGRLATDFIAEA 337
Query: 90 LGFQTFIPPF--ANLNGSDILKGVNYASGSAGIRKESGSQLG-HNVNLGLQLLHHRAIVS 146
LG++ +P F NL D+ GV++AS + G + + + V+ +Q H I
Sbjct: 338 LGYRQMLPAFLDPNLKVEDLPYGVSFASAATGFDDYTANVVNVLPVSKQIQYFMHYKI-- 511
Query: 147 CIAHKLGGLDKATQCLSQCLYYVNIDTNDFEQN 179
KL G ++A + L+ V++ TNDF QN
Sbjct: 512 -HLRKLLGEERAEFIIRNALFIVSMGTNDFLQN 607
>TC8381
Length = 844
Score = 90.5 bits (223), Expect = 4e-19
Identities = 66/125 (52%), Positives = 83/125 (65%), Gaps = 4/125 (3%)
Frame = +1
Query: 221 VLVGLDR-LGCVRI**VAFQSSW*--MDLVLRRRMLPYSFLMISLNH*WIDSTRKS*LIP 277
+++G +R L I *VAFQ * MDL L+RRMLP+SF MISL WI +T KS LIP
Sbjct: 1 IILGQERPLWLEWIA*VAFQRLV*QIMDLALKRRMLPHSFSMISLKLLWIVTTTKSYLIP 180
Query: 278 NSSS*IVHL*STTNPMLLEFQVSRLLIMVVAR-QMKRENVFVMVFHARIGMSMCFGMEFT 336
NSSS I *S TN VSRLL+++VA ++ E VF++ HA+IG+S+ GMEFT
Sbjct: 181 NSSSSIAQP*SMTN-----HTVSRLLMLLVAN*TLQEEFVFLI*HHAKIGVSISSGMEFT 345
Query: 337 QQKLQ 341
Q KLQ
Sbjct: 346 QPKLQ 360
Score = 37.4 bits (85), Expect = 0.004
Identities = 13/18 (72%), Positives = 18/18 (99%)
Frame = +3
Query: 214 HFGARKSVLVGLDRLGCV 231
HFGARK+++VG+DRLGC+
Sbjct: 3 HFGARKTIMVGMDRLGCI 56
>AV416139
Length = 210
Score = 87.0 bits (214), Expect = 4e-18
Identities = 40/71 (56%), Positives = 55/71 (77%)
Frame = +1
Query: 58 ANFLSYGIDFPATFPTERYSNGRNPIDKIAQLLGFQTFIPPFANLNGSDILKGVNYASGS 117
AN+ YGIDFP PT R++NGR +D +AQL+GF+T+IPP + G ++L+GVNYASG+
Sbjct: 1 ANYRPYGIDFPLG-PTGRFTNGRTYVDALAQLMGFRTYIPPSSRARGLELLRGVNYASGA 177
Query: 118 AGIRKESGSQL 128
AGIR+E+G L
Sbjct: 178 AGIRQETGDNL 210
>AV419146
Length = 214
Score = 86.7 bits (213), Expect = 5e-18
Identities = 44/60 (73%), Positives = 51/60 (84%)
Frame = +1
Query: 1 MGCESKTWLILSLVTVIVASIMQHSTVLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANF 60
M ESK+WL+LSL ++VAS MQ S VLG SQVPC+FVFG+SLSDSGN+NNL TSAKANF
Sbjct: 37 MAFESKSWLVLSLAVLMVASCMQQS-VLGASQVPCLFVFGNSLSDSGNNNNLNTSAKANF 213
>AV425402
Length = 273
Score = 86.3 bits (212), Expect = 7e-18
Identities = 41/68 (60%), Positives = 56/68 (82%)
Frame = +1
Query: 1 MGCESKTWLILSLVTVIVASIMQHSTVLGESQVPCIFVFGDSLSDSGNDNNLPTSAKANF 60
MG E+K WL+L L+ ++A+ +Q V G+SQVPC+F+FGDSLSDSGN+N+LPT+AK+N+
Sbjct: 67 MGFETKAWLVLPLL-FLLANCLQ-KCVTGKSQVPCLFIFGDSLSDSGNNNDLPTTAKSNY 240
Query: 61 LSYGIDFP 68
YGIDFP
Sbjct: 241 NPYGIDFP 264
>BP040821
Length = 478
Score = 85.5 bits (210), Expect = 1e-17
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Frame = +2
Query: 5 SKTWLILSLVTVIVASIMQHSTVL--GESQVPCIFVFGDSLSDSGNDNNLPTSAKANFLS 62
S T LIL + ++V + + V +VP + FGDS+ D GN+N + T K NF
Sbjct: 62 SPTTLILHFILLLVLTSRTKAVVKLPPNVEVPAVMAFGDSIVDPGNNNKIKTLVKCNFPP 241
Query: 63 YGIDFPATFPTERYSNGRNPIDKIAQLLGFQTFIPPF--ANLNGSDILKGVNYASGSAG 119
YG DF PT R+ NG+ P D +A+ LG + +P + NL SD+L GV++ASG++G
Sbjct: 242 YGKDFEGGNPTGRFCNGKIPSDLLAEELGIKELLPAYKQPNLKPSDLLTGVSFASGASG 418
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.336 0.145 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,733,345
Number of Sequences: 28460
Number of extensions: 77358
Number of successful extensions: 610
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of query: 341
length of database: 4,897,600
effective HSP length: 91
effective length of query: 250
effective length of database: 2,307,740
effective search space: 576935000
effective search space used: 576935000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0476b.4