BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0476b.11
(556 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re... 121 3e-28
BP038017 106 1e-23
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp... 93 1e-19
AV425218 88 4e-18
CN825057 64 8e-11
CB827002 60 7e-10
AV780484 40 8e-04
AV765466 36 0.019
AV423237 33 0.093
TC15791 similar to UP|Q9ZV01 (Q9ZV01) At2g39070 protein, partial... 30 1.0
BF177509 29 1.7
TC17583 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired re... 28 3.0
BP068077 28 3.9
TC19125 UP|GBA1_LOTJA (P49082) Guanine nucleotide-binding protei... 28 5.1
TC15196 27 8.7
>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
protein-like, partial (4%)
Length = 660
Score = 121 bits (303), Expect = 3e-28
Identities = 52/71 (73%), Positives = 63/71 (88%)
Frame = +2
Query: 173 GDAASALSYLQRKGEKDPMFFFKFTRSGEENLENLFWCDGTSRLDYQAFGDVIVFYSTYK 232
GDAA+ALSYL+ K + DPMFF+KFT++G+E+LENLFWCDG SR+DY FGDVI F STYK
Sbjct: 146 GDAAAALSYLEGKADNDPMFFYKFTKTGDESLENLFWCDGVSRMDYNVFGDVIAFDSTYK 325
Query: 233 KNKYNKPVVIF 243
KNKYNKP+V+F
Sbjct: 326 KNKYNKPLVVF 358
>BP038017
Length = 570
Score = 106 bits (264), Expect = 1e-23
Identities = 46/131 (35%), Positives = 76/131 (57%)
Frame = +2
Query: 174 DAASALSYLQRKGEKDPMFFFKFTRSGEENLENLFWCDGTSRLDYQAFGDVIVFYSTYKK 233
DA + L+Y ++ K+P F++ E + N+FW D SR Y FGD ++F + Y+
Sbjct: 167 DAQNLLNYFKKMQGKNPGFYYAIQLDDENRMINVFWADARSRSAYNYFGDAVIFDTMYRP 346
Query: 234 NKYNKPVVIFSGYNHHKETTIFACALVCDETIETYKWVLKALDEAMFGKQPKAVVTDGDK 293
N+Y P F+G NHH + +F CAL+ DE+ ++ W+ + AM + P ++ TD D+
Sbjct: 347 NQYQVPFAPFTGVNHHGQNVLFGCALLLDESESSFTWLFRTWLSAMNDRPPVSITTDQDR 526
Query: 294 SMREAVKVVFP 304
+++ AV VFP
Sbjct: 527 AIQAAVAQVFP 559
>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transposase-like
{Oryza sativa (japonica cultivar-group);}, partial (8%)
Length = 488
Score = 92.8 bits (229), Expect = 1e-19
Identities = 41/106 (38%), Positives = 64/106 (59%)
Frame = +1
Query: 173 GDAASALSYLQRKGEKDPMFFFKFTRSGEENLENLFWCDGTSRLDYQAFGDVIVFYSTYK 232
G+A L Y QRK ++ F+ + E+ + N+FW D +DY FGD++ STY
Sbjct: 40 GEAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDMVSLDSTYC 219
Query: 233 KNKYNKPVVIFSGYNHHKETTIFACALVCDETIETYKWVLKALDEA 278
+ N+P+ +FSG+NHH++ IF AL+ DET E+Y W+ ++ EA
Sbjct: 220 THSSNRPLAVFSGFNHHRKAVIFGAALLYDETTESY*WLFESFLEA 357
>AV425218
Length = 419
Score = 87.8 bits (216), Expect = 4e-18
Identities = 35/138 (25%), Positives = 76/138 (54%), Gaps = 4/138 (2%)
Frame = +2
Query: 238 KPVVIFSGYNHHKETTIFACALVCDETIETYKWVLKALDEAMFGKQPKAVVTDGDKSMRE 297
+P+ G NHH ++ +F CAL+ E E++ W+ ++L M G P+ ++TD ++M++
Sbjct: 2 RPLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCMSGVPPQGIITDHSEAMKK 181
Query: 298 AVKVVFPNATHRLCGWHIQQNCLEKI----KIPDFLNEFKTLIYGNFTPERFETKWLQVI 353
A++ V P+ HR C +I + +K+ + + + ++Y + FE W +++
Sbjct: 182 AIETVLPSTRHRWCLSYIMKKLPQKLLGYAQYESIRHHLQNVVYDAVVIDEFERNWKKIV 361
Query: 354 EKYGIGEEKWIKQTYETR 371
E +G+ + +W+ + + R
Sbjct: 362 EDFGLEDNEWLNELFLER 415
>CN825057
Length = 721
Score = 63.5 bits (153), Expect = 8e-11
Identities = 30/84 (35%), Positives = 44/84 (51%)
Frame = +1
Query: 166 ELFAASAGDAASALSYLQRKGEKDPMFFFKFTRSGEENLENLFWCDGTSRLDYQAFGDVI 225
+ A GDA L Y + +++P FF+ + E+ L N+FW D S DY +F DV+
Sbjct: 454 QYLAMDEGDAQVMLEYFKHIQKENPNFFYSIDLNEEQRLRNIFWIDAKSINDYLSFNDVV 633
Query: 226 VFYSTYKKNKYNKPVVIFSGYNHH 249
F ++Y K+ P F G NHH
Sbjct: 634 SFDTSYIKSNEKLPFAPFVGVNHH 705
>CB827002
Length = 534
Score = 60.5 bits (145), Expect = 7e-10
Identities = 38/170 (22%), Positives = 76/170 (44%)
Frame = +1
Query: 360 EEKWIKQTYETRQMWATAFMREKFFAGIRTTSLCEGINSFIKRYVQCKNSILDFIYNFER 419
+ +W+ Y + + A +R+ FFA + T + +NS+ YV ++ F +E+
Sbjct: 31 DHEWLS-LYSSCRQGAPVHLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYEK 207
Query: 420 AVEEYRHNELASDFKSSYGEPVLITALSHIEQGAAKLLTLNMFREVRHMIQRALNLNLVE 479
A+E E+ +D+ + PVL T S +E+ A++L T +F + + L +
Sbjct: 208 ALESRNEKEVRADYDTMNTLPVLRTP-SPMEKQASELYTRKIFMRFQEELVGTLTFMASK 384
Query: 480 RSEIGTTVMIKFSICRHPNTQFLVIYDKNQNMFDCDCGFSEYVGIPCSHI 529
+ G + + + + V ++ + C C E+ G+ C HI
Sbjct: 385 ADDDGEVITYHVAKFGEDHKAYYVKFNVLEMKASCSCQMFEFSGLLCRHI 534
>AV780484
Length = 529
Score = 40.4 bits (93), Expect = 8e-04
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = -1
Query: 181 YLQRKGEKDPMFFFKFTRSGEENLENLFWCDGTSRLDYQAFGDVIVFYSTYKKNKYNKP 239
++ +GE +P FF+ +L ++FW D RLDY+ +++ ++ Y KNKY P
Sbjct: 187 FVSTQGE-NPNFFYAIDLDLNRHLTSVFWVDIKGRLDYETSMMLVLIHTHYLKNKYKIP 14
>AV765466
Length = 599
Score = 35.8 bits (81), Expect = 0.019
Identities = 15/42 (35%), Positives = 20/42 (46%)
Frame = -2
Query: 514 CDCGFSEYVGIPCSHIICAMRTENMNEFPASLVSKRWLKTAK 555
CDC E+ GI C H + + E + E P V RW K +
Sbjct: 592 CDCRLFEFRGILCRHSLAILSQERVKEVPDRYVLDRWRKNMR 467
>AV423237
Length = 310
Score = 33.5 bits (75), Expect = 0.093
Identities = 25/95 (26%), Positives = 47/95 (49%)
Frame = +2
Query: 211 DGTSRLDYQAFGDVIVFYSTYKKNKYNKPVVIFSGYNHHKETTIFACALVCDETIETYKW 270
D TSR++Y FGD ++F +T + + + + G + I+ AL+ +E+ ++ W
Sbjct: 17 DATSRMNYSYFGDAVIFDTTI--DNHIESICSSWG*SSWATCVIWLVALIANESESSFVW 190
Query: 271 VLKALDEAMFGKQPKAVVTDGDKSMREAVKVVFPN 305
L L ++ TD D S + + +VFP+
Sbjct: 191 -LSGLGSMPCLDATCSITTDLDHSYK-LLWLVFPS 289
>TC15791 similar to UP|Q9ZV01 (Q9ZV01) At2g39070 protein, partial (91%)
Length = 556
Score = 30.0 bits (66), Expect = 1.0
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 318 NCLEKIKIPDFLNEFKTL 335
NC+EK+ IP FLN KTL
Sbjct: 482 NCIEKVPIPQFLNGSKTL 535
>BF177509
Length = 472
Score = 29.3 bits (64), Expect = 1.7
Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 7/62 (11%)
Frame = +1
Query: 491 FSICRHPNTQFLVIYDKNQNMFD-----CDCGFSEYVGIPCSHIICAMRT--ENMNEFPA 543
+ + R +F VI + N+ D C C + G+PC+H + A+ + +N++ F
Sbjct: 286 YQVLRANEAEFEVISHEGSNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTE 465
Query: 544 SL 545
L
Sbjct: 466 KL 471
>TC17583 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired response
protein, mutator-like transposase-like protein,
phytochrome A signaling protein-like, partial (3%)
Length = 666
Score = 28.5 bits (62), Expect = 3.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 216 LDYQAFGDVIVFYSTYKKNKYNKPVVI 242
+DY+ FGDV+ +TY N +P+ +
Sbjct: 12 MDYEYFGDVVSLDTTYSTNNAYRPLAV 92
>BP068077
Length = 368
Score = 28.1 bits (61), Expect = 3.9
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = -3
Query: 200 GEENLENLFWCDGTSRLDYQAFGDVIVFYSTY 231
G NL NLFWC +S D+ D+ + Y Y
Sbjct: 108 GSRNLWNLFWCTISSLFDFST--DI*IGYQCY 19
>TC19125 UP|GBA1_LOTJA (P49082) Guanine nucleotide-binding protein alpha-1
subunit (GP-alpha-1), complete
Length = 1597
Score = 27.7 bits (60), Expect = 5.1
Identities = 26/114 (22%), Positives = 48/114 (41%), Gaps = 7/114 (6%)
Frame = +2
Query: 286 AVVTDGDKSMREAVKVVFPNATHRLCGWHIQQNCLEKIKIPDFLNEFKTLIYGNFTPERF 345
A +++ D+++ E T L W ++Q C EK FLN+F
Sbjct: 740 AAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILKVPLN 919
Query: 346 ETKWLQVIEKYGIGEE------KWIKQTYETRQMWATAFMR-EKFFAGIRTTSL 392
+W + + G++ +++K+ +E TA R ++ F RTT+L
Sbjct: 920 VCEWFKDYQPVSTGKQEIEHAYEFVKKKFEESYFQNTAPDRVDRVFKIYRTTAL 1081
>TC15196
Length = 605
Score = 26.9 bits (58), Expect = 8.7
Identities = 20/70 (28%), Positives = 31/70 (43%), Gaps = 9/70 (12%)
Frame = -3
Query: 292 DKSMREAVKVVFPNATHRLCGWHIQQNCLE-------KIKIPD--FLNEFKTLIYGNFTP 342
DK + V + TH C +H+ CL K +I D N +TL +GNF
Sbjct: 240 DKIDQNQVPAMGLEPTHLPCHFHMLLLCLPPEDDIPYKSQIADQGSCNLAETLDHGNFAI 61
Query: 343 ERFETKWLQV 352
+ + W+Q+
Sbjct: 60 SQTDKNWMQI 31
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.336 0.144 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,162,596
Number of Sequences: 28460
Number of extensions: 140503
Number of successful extensions: 1023
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of query: 556
length of database: 4,897,600
effective HSP length: 95
effective length of query: 461
effective length of database: 2,193,900
effective search space: 1011387900
effective search space used: 1011387900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0476b.11