TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476a.7
         (109 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP044358                                                               26  0.87
TC8980 similar to UP|Q7X998 (Q7X998) mRNA-binding protein (Fragm...    23  7.4
AV771370                                                               23  7.4
TC18001                                                                23  9.6
BP075633                                                               23  9.6

>BP044358 
          Length = 513

 Score = 26.2 bits (56), Expect = 0.87
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 48  YFKVSPSLY*ILTHFVHVWFSVC 70
           Y+ V+ S   + TH++++W++ C
Sbjct: 113 YYLVTDSAIVLFTHYMYIWWATC 45


>TC8980 similar to UP|Q7X998 (Q7X998) mRNA-binding protein (Fragment),
           partial (40%)
          Length = 598

 Score = 23.1 bits (48), Expect = 7.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 51  VSPSLY*ILTHFVHVWFSVC 70
           VSP+LY +L  F+ V+  VC
Sbjct: 426 VSPNLYVLLKPFLQVFREVC 367


>AV771370 
          Length = 445

 Score = 23.1 bits (48), Expect = 7.4
 Identities = 8/15 (53%), Positives = 12/15 (79%)
 Frame = +3

Query: 40  ATGHDKRLYFKVSPS 54
           +T HD+ L+FK +PS
Sbjct: 183 STPHDQNLWFKANPS 227


>TC18001 
          Length = 404

 Score = 22.7 bits (47), Expect = 9.6
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 21  IVACLANTVDSAESVLRVAATGHDKRLYF-KVSPSLY 56
           +  CL   ++     L   A  H K L+F +  PS+Y
Sbjct: 227 LCVCLVPYINPTHKQLSAGAKFHSKMLFFSRFPPSIY 117


>BP075633 
          Length = 481

 Score = 22.7 bits (47), Expect = 9.6
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 49  FKVSPSLY*ILT--HFVHVWFSVC 70
           F+V+P  +  +   + VH WF+VC
Sbjct: 322 FQVAPQFFCSICCYYLVHQWFTVC 251


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.366    0.161    0.597 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,903,880
Number of Sequences: 28460
Number of extensions: 20972
Number of successful extensions: 268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of query: 109
length of database: 4,897,600
effective HSP length: 85
effective length of query: 24
effective length of database: 2,478,500
effective search space: 59484000
effective search space used: 59484000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 47 (22.7 bits)