BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0437a.8
(446 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8038 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soy... 875 0.0
TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain,... 863 0.0
TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain... 847 0.0
TC8963 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (F... 629 0.0
TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, c... 379 e-106
TC13837 homologue to GB|BAB64211.1|15408819|AP003631 tubulin bet... 370 e-103
TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (F... 370 e-103
TC8128 homologue to UP|TBA3_ELEIN (O22349) Tubulin alpha-3 chain... 342 1e-94
TC15212 homologue to UP|TBB7_MAIZE (Q41784) Tubulin beta-7 chain... 268 2e-72
TC15547 homologue to UP|TBB_CICAR (Q39445) Tubulin beta chain, p... 194 3e-53
TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%) 202 7e-53
TC18284 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alph... 194 2e-50
AV407159 168 1e-42
TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (F... 152 1e-37
TC9375 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soy... 149 1e-36
BF177912 80 9e-16
TC8127 homologue to UP|Q9SQ71 (Q9SQ71) Alpha-tubulin (Fragment),... 76 1e-14
TC19128 homologue to PIR|S33512|S33512 tubulin alpha chain - Eug... 70 5e-13
BP037355 55 2e-08
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 32 0.28
>TC8038 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soybean
{Glycine max;} , complete
Length = 1685
Score = 875 bits (2260), Expect = 0.0
Identities = 422/441 (95%), Positives = 434/441 (97%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQLERINVYYNEATGGRYV 60
MREILHIQGGQCGNQIGAKFWEV+C EHGIDH+GKY GD+ELQLERINVYYNEA+ GR+V
Sbjct: 112 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDHTGKYGGDSELQLERINVYYNEASCGRFV 291
Query: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 292 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 471
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 472 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 651
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+FGDLNHLISATMSGVTCCL
Sbjct: 652 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 831
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM 300
RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRAL+VPELTQQMWDSKNMM
Sbjct: 832 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALSVPELTQQMWDSKNMM 1011
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKG 360
CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKS+VCDIPP G
Sbjct: 1012CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPTG 1191
Query: 361 LKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVA 420
LKM+STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+
Sbjct: 1192LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 1371
Query: 421 EYQQYQDATADEDEYEEEEEE 441
EYQQY DATADEDEYEEEE E
Sbjct: 1372EYQQYPDATADEDEYEEEEGE 1434
>TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain, complete
Length = 1689
Score = 863 bits (2230), Expect = 0.0
Identities = 413/442 (93%), Positives = 433/442 (97%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQLERINVYYNEATGGRYV 60
MREILHIQGGQCGNQIGAKFWEV+C EHGID +G+Y G+ ++QLER+NVYYNEA+ GR+V
Sbjct: 115 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 294
Query: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 295 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 474
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 475 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 654
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+FGDLNHLISATMSGVTCCL
Sbjct: 655 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 834
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM 300
RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD+KNMM
Sbjct: 835 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 1014
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKG 360
CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP G
Sbjct: 1015CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG 1194
Query: 361 LKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVA 420
LKM+STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+
Sbjct: 1195LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 1374
Query: 421 EYQQYQDATADEDEYEEEEEEE 442
EYQQYQDATAD++ Y+ E+E+E
Sbjct: 1375EYQQYQDATADDEGYDYEDEDE 1440
>TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain (Beta-3
tubulin), complete
Length = 2208
Score = 847 bits (2188), Expect = 0.0
Identities = 403/442 (91%), Positives = 425/442 (95%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQLERINVYYNEATGGRYV 60
MREILH+Q GQCGNQIG KFWEV+CDEHGID SG Y G++ LQLER+NVYYNEA+GGRYV
Sbjct: 66 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDQSGSYVGNSHLQLERVNVYYNEASGGRYV 245
Query: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDS+RSGP+G+IFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 246 PRAVLMDLEPGTMDSLRSGPYGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 425
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAENCDCLQGFQ+CHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDTVV
Sbjct: 426 RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 605
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCL 240
EPYNATLS+HQLVENADECMVLDNEALYDICFRTLKL P+FGDLNHLIS TMSGVTCCL
Sbjct: 606 EPYNATLSIHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 785
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM 300
RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LT+PELTQQMWD++NMM
Sbjct: 786 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSSLTIPELTQQMWDARNMM 965
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKG 360
CAADPRHGRYLTASAMFRGKMSTKEVD+QMINVQNKNSSYFVEWIPNNVKSSVCDIPP G
Sbjct: 966 CAADPRHGRYLTASAMFRGKMSTKEVDQQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTG 1145
Query: 361 LKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVA 420
L MSSTFIGNSTSIQEMFRRVSEQFT MF+RKAFLHWYT EGMDEMEFTEAESNMNDLVA
Sbjct: 1146LSMSSTFIGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTAEGMDEMEFTEAESNMNDLVA 1325
Query: 421 EYQQYQDATADEDEYEEEEEEE 442
EYQQYQDATA E+E +EEEEE
Sbjct: 1326EYQQYQDATAVEEEEGDEEEEE 1391
>TC8963 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (Fragment),
partial (75%)
Length = 985
Score = 629 bits (1623), Expect = 0.0
Identities = 303/304 (99%), Positives = 304/304 (99%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQLERINVYYNEATGGRYV 60
MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQLERINVYYNEATGGRYV
Sbjct: 72 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQLERINVYYNEATGGRYV 251
Query: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 252 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 431
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 432 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 611
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHL+SATMSGVTCCL
Sbjct: 612 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLMSATMSGVTCCL 791
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM 300
RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM
Sbjct: 792 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM 971
Query: 301 CAAD 304
CAAD
Sbjct: 972 CAAD 983
>TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, complete
Length = 1907
Score = 379 bits (973), Expect = e-106
Identities = 184/452 (40%), Positives = 284/452 (62%), Gaps = 10/452 (2%)
Frame = +2
Query: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQL--ERINVYYNEATGGR 58
MRE + + GQ G Q+G WE+ C EHGI G+ D + + N +++E G+
Sbjct: 224 MRECISVHIGQAGIQVGNACWELYCLEHGIGPDGQMPSDKTVGGGDDAFNTFFSETGAGK 403
Query: 59 YVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
+VPRAV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D LD
Sbjct: 404 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 583
Query: 119 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178
+RK A+NC LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+V+PSP+VS +
Sbjct: 584 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 763
Query: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTC 238
VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + PT+ +LN LIS +S +T
Sbjct: 764 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 943
Query: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKN 298
LRF G LN D+ + NL+P+PR+HF + +AP+ S + L+V E+T ++ +
Sbjct: 944 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 1123
Query: 299 MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP 358
MM DPRHG+Y+ M+RG + K+V+ + +++ K + FV+W P K + PP
Sbjct: 1124MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGSIKTKRTIQFVDWCPTGFKCGINYQPP 1303
Query: 359 --------KGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
++ + I NSTS+ E+F R+ +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 1304TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDVKFDLMYSKRAFVHWYVGEGMEEGEFSE 1483
Query: 411 AESNMNDLVAEYQQYQDATADEDEYEEEEEEE 442
A DL A + Y++ A+ E +++ E+
Sbjct: 1484AR---EDLAALEKDYEEVGAESGEGGDDDIED 1570
>TC13837 homologue to GB|BAB64211.1|15408819|AP003631 tubulin beta-4 chain
{Oryza sativa (japonica cultivar-group);}, partial (42%)
Length = 627
Score = 370 bits (949), Expect = e-103
Identities = 173/189 (91%), Positives = 186/189 (97%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQLERINVYYNEATGGRYV 60
MREILHIQGGQCGNQIG+KFWEV+CDEHG+D +G+Y G+++LQLER+NVYYNEA+ GR+V
Sbjct: 61 MREILHIQGGQCGNQIGSKFWEVVCDEHGLDPTGRYVGNSDLQLERVNVYYNEASCGRFV 240
Query: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 241 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 420
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 421 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 600
Query: 181 EPYNATLSV 189
EPYNATLSV
Sbjct: 601 EPYNATLSV 627
>TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (Fragment),
partial (44%)
Length = 600
Score = 370 bits (949), Expect = e-103
Identities = 175/179 (97%), Positives = 178/179 (98%)
Frame = +1
Query: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQLERINVYYNEATGGRYV 60
MREILHIQGGQCGNQIGAKFWEVICDEHGIDH+GKYNGD+ELQLERINVYYNEA+GGRYV
Sbjct: 64 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQLERINVYYNEASGGRYV 243
Query: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 244 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 423
Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSP VSDTV
Sbjct: 424 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPXVSDTV 600
>TC8128 homologue to UP|TBA3_ELEIN (O22349) Tubulin alpha-3 chain (Alpha-3
tubulin), complete
Length = 1615
Score = 342 bits (876), Expect = 1e-94
Identities = 174/451 (38%), Positives = 270/451 (59%), Gaps = 13/451 (2%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQL---ERINVYYNEATGG 57
MREI+ I GQ G Q+G WE+ C EHGI G D+ + + N +++E G
Sbjct: 105 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGIMPSDSSFGVVAHDAFNTFFSETGSG 284
Query: 58 RYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
++VPRAV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D L
Sbjct: 285 KHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 464
Query: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
D VRK A+NC LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+++PSP+VS
Sbjct: 465 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 644
Query: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVT 237
VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + PT+ +LN LIS +S +T
Sbjct: 645 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 824
Query: 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSK 297
LRF G +N D+ + NL+P+PR+HF + +AP+ S + L+VPE+T +++
Sbjct: 825 TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPS 1004
Query: 298 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIP 357
+MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + P
Sbjct: 1005SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGIHYQP 1184
Query: 358 PK--------GLKMSSTFIGNSTSIQEMFRRVSEQF--TAMFRRKAFLHWYTGEGMDEME 407
P ++ + I N ++ E+F R+ QF T L + G G +
Sbjct: 1185PSVVPGGDPAKVQRAVCMIRNHPAVAEVFSRLDPQFDLTVCPEGPCPLVCW*GYGRRGV- 1361
Query: 408 FTEAESNMNDLVAEYQQYQDATADEDEYEEE 438
T+A ++ L +Y++ AD++E E+
Sbjct: 1362LTKAREDLAALEKDYEEVGAEGADDEEEGED 1454
>TC15212 homologue to UP|TBB7_MAIZE (Q41784) Tubulin beta-7 chain (Beta-7
tubulin), partial (30%)
Length = 659
Score = 268 bits (684), Expect = 2e-72
Identities = 130/133 (97%), Positives = 133/133 (99%)
Frame = +3
Query: 309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSSTFI 368
RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKM+STFI
Sbjct: 3 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFI 182
Query: 369 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 428
GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA
Sbjct: 183 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 362
Query: 429 TADEDEYEEEEEE 441
TAD++EYEEEEEE
Sbjct: 363 TADDEEYEEEEEE 401
>TC15547 homologue to UP|TBB_CICAR (Q39445) Tubulin beta chain, partial
(27%)
Length = 673
Score = 194 bits (494), Expect(2) = 3e-53
Identities = 95/101 (94%), Positives = 98/101 (96%), Gaps = 1/101 (0%)
Frame = +2
Query: 341 FVEWIPNNVKSSVCDIPPKGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400
FVEWIPNNVKSSVCDIPPK LKMSSTFIGNSTSIQEMFRRVSEQFTAM+RRKAFLHWYTG
Sbjct: 47 FVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMYRRKAFLHWYTG 226
Query: 401 EGMDEMEFTEAESNMNDLVAEYQQYQDATADEDE-YEEEEE 440
EGMDEMEFTEAESNMNDLVAEYQQYQDATADE+E Y+E EE
Sbjct: 227 EGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEDYDEGEE 349
Score = 31.2 bits (69), Expect(2) = 3e-53
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 326 VDEQMINVQNKNSS 339
VDEQMINVQNKNSS
Sbjct: 1 VDEQMINVQNKNSS 42
>TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%)
Length = 591
Score = 202 bits (515), Expect = 7e-53
Identities = 94/138 (68%), Positives = 116/138 (83%)
Frame = +3
Query: 304 DPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKM 363
DPR+GRYLTASA FRGK+STKEV+EQM +Q KNS F++WIPN +K+SVCD+ P G M
Sbjct: 9 DPRNGRYLTASAYFRGKVSTKEVEEQMDAIQTKNSGQFIDWIPNAIKASVCDVAPTGETM 188
Query: 364 SSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQ 423
S+ FIGNST+IQ++F+RV F+AMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLV+E Q
Sbjct: 189 SAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSELQ 368
Query: 424 QYQDATADEDEYEEEEEE 441
QY+ A+ + +E E+E E
Sbjct: 369 QYEAASVEGEEEEDEYAE 422
>TC18284 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alpha-5 chain,
partial (44%)
Length = 739
Score = 194 bits (493), Expect = 2e-50
Identities = 89/199 (44%), Positives = 133/199 (66%), Gaps = 2/199 (1%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQL--ERINVYYNEATGGR 58
MRE++ I GQ G Q+G WE+ C EHGI G D + + + N +++E G+
Sbjct: 141 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 320
Query: 59 YVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+++ LD
Sbjct: 321 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 500
Query: 119 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178
RK A+NC LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+++PSP+VS
Sbjct: 501 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 680
Query: 179 VVEPYNATLSVHQLVENAD 197
VVEPYN+ LS H L+E+ D
Sbjct: 681 VVEPYNSVLSTHSLLEHTD 737
>AV407159
Length = 301
Score = 168 bits (426), Expect = 1e-42
Identities = 77/96 (80%), Positives = 87/96 (90%), Gaps = 3/96 (3%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNG---DAELQLERINVYYNEATGG 57
MREILHIQGGQCGNQIG+K+WEVICDEHGIDH+GK+ G D + QLERINVYYNEA+ G
Sbjct: 12 MREILHIQGGQCGNQIGSKWWEVICDEHGIDHTGKFTGTDSDTDFQLERINVYYNEASAG 191
Query: 58 RYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFG 93
RYVPRAVLMDLEPGTM+S+RSGP+G+I RPDN VFG
Sbjct: 192 RYVPRAVLMDLEPGTMESIRSGPYGKIVRPDNVVFG 299
>TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (Fragment),
partial (34%)
Length = 797
Score = 152 bits (383), Expect = 1e-37
Identities = 74/80 (92%), Positives = 79/80 (98%), Gaps = 1/80 (1%)
Frame = +2
Query: 364 SSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQ 423
+STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQ
Sbjct: 209 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 388
Query: 424 QYQDATADED-EYEEEEEEE 442
QYQDATA++D EYE+EEEEE
Sbjct: 389 QYQDATAEDDGEYEDEEEEE 448
Score = 132 bits (332), Expect = 1e-31
Identities = 73/107 (68%), Positives = 77/107 (71%), Gaps = 9/107 (8%)
Frame = +1
Query: 300 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK 359
MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI PK
Sbjct: 16 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPK 195
Query: 360 GLKMSSTFIG----NSTSIQEMFRRV-----SEQFTAMFRRKAFLHW 397
GL M NS ++QE R V E F A+ +HW
Sbjct: 196 GLSMGIHIHWQLNLNSGNVQESERAVHCHV*EEGFLAL------VHW 318
>TC9375 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soybean
{Glycine max;} , partial (15%)
Length = 699
Score = 149 bits (375), Expect = 1e-36
Identities = 71/71 (100%), Positives = 71/71 (100%)
Frame = +2
Query: 376 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEY 435
EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEY
Sbjct: 2 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEY 181
Query: 436 EEEEEEEPVDA 446
EEEEEEEPVDA
Sbjct: 182 EEEEEEEPVDA 214
>BF177912
Length = 391
Score = 79.7 bits (195), Expect = 9e-16
Identities = 38/96 (39%), Positives = 57/96 (58%), Gaps = 2/96 (2%)
Frame = +3
Query: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQL--ERINVYYNEATGGR 58
MRE + I GQ G Q+G WE+ C EHGI G+ D + + N +++E G+
Sbjct: 99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 278
Query: 59 YVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 94
+VPRAV +DLEP +D VR+G + Q+F P+ + G+
Sbjct: 279 HVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGK 386
>TC8127 homologue to UP|Q9SQ71 (Q9SQ71) Alpha-tubulin (Fragment), partial
(89%)
Length = 597
Score = 76.3 bits (186), Expect = 1e-14
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Frame = +2
Query: 336 KNSSYFVEWIPNNVKSSVCDIPPK--------GLKMSSTFIGNSTSIQEMFRRVSEQFTA 387
K + FV+W P K + PP ++ + I N+T++ E+F R+ +F
Sbjct: 2 KRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDL 181
Query: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEYEEE 438
M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ AD++E E+
Sbjct: 182 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEEEGED 334
>TC19128 homologue to PIR|S33512|S33512 tubulin alpha chain - Euglena
gracilis {Euglena gracilis;} , partial (16%)
Length = 494
Score = 70.5 bits (171), Expect = 5e-13
Identities = 32/73 (43%), Positives = 50/73 (67%)
Frame = +3
Query: 368 IGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQD 427
I N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA DL A + Y++
Sbjct: 9 ISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEE 179
Query: 428 ATADEDEYEEEEE 440
A+ +E EE+EE
Sbjct: 180 VGAEGEEGEEDEE 218
>BP037355
Length = 422
Score = 55.5 bits (132), Expect = 2e-08
Identities = 25/58 (43%), Positives = 36/58 (61%)
Frame = +2
Query: 53 EATGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 110
E G++VPRAV +DLEP ++ V +G + Q+F P+ + G+ A NN A GH T A
Sbjct: 167 ETGSGKHVPRAVFVDLEPTVINEVCAGTYRQLFHPEQLISGKEDAANNLAGGHCTGNA 340
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 31.6 bits (70), Expect = 0.28
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 407 EFTEAESNMNDLVAEYQQYQDATAD-EDEYEEEEEEEPVDA 446
E+ E E + + V E ++ ++ + E+E EEEEEEE V+A
Sbjct: 193 EYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEEEVEA 315
Score = 30.4 bits (67), Expect = 0.62
Identities = 15/28 (53%), Positives = 20/28 (70%), Gaps = 1/28 (3%)
Frame = +1
Query: 416 NDLVAEYQQYQDATAD-EDEYEEEEEEE 442
N L AE Q+Y++ + E+E EEEEEEE
Sbjct: 169 NKLEAEVQEYEEVEEEVEEEVEEEEEEE 252
Score = 28.9 bits (63), Expect = 1.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 405 EMEFTEAESNMNDLVAEYQQYQDATADEDEYEEEEEEE 442
E E E E ++ E ++ ++ +E+E EEEEEEE
Sbjct: 178 EAEVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEEE 291
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,137,450
Number of Sequences: 28460
Number of extensions: 92049
Number of successful extensions: 866
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of query: 446
length of database: 4,897,600
effective HSP length: 93
effective length of query: 353
effective length of database: 2,250,820
effective search space: 794539460
effective search space used: 794539460
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0437a.8