TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0404.10
         (989 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11605                                                               142  5e-52
BP033684                                                              155  3e-38
BI418523                                                              117  7e-27
BP051903                                                               67  2e-11
TC12327                                                                57  1e-08
BP078889                                                               56  3e-08
TC18897 weakly similar to UP|Q9XEV3 (Q9XEV3) TIA-1 related prote...    55  7e-08
BG662008                                                               49  3e-07
TC11323                                                                51  1e-06
TC14392 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, pa...    48  7e-06
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p...    45  4e-05
TC14208 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, pa...    45  4e-05
TC15623 similar to UP|P93486 (P93486) Glycine-rich RNA-binding p...    45  4e-05
AV428268                                                               45  6e-05
AV427022                                                               45  6e-05
AV418280                                                               45  6e-05
BI419822                                                               43  2e-04
TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p...    43  3e-04
AI967582                                                               42  5e-04
TC19849 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, p...    41  0.001

>TC11605 
          Length = 546

 Score =  142 bits (359), Expect(2) = 5e-52
 Identities = 58/105 (55%), Positives = 77/105 (73%)
 Frame = +1

Query: 799 WLLWTTILAREEVYCCFPSSIQGLLLEWSSLRAISDPIMWEIIPYAMFWSIWRARNDLVF 858
           W  W +ILAR+ V  C P S+  LL EW SLRA SD ++WE++P A+ WSIW ARNDLVF
Sbjct: 1   WRFWNSILARDGVQWCVPGSVGDLLKEWPSLRAKSDRVLWELVPCAVVWSIWLARNDLVF 180

Query: 859 NQKDFSADYIWDLHLIRVMWWIKSWWKECPFTVLDFSQHFEKIRI 903
           NQK+F  + +WDLHL+RVMWW K+WWK CP++  DF Q  + +++
Sbjct: 181 NQKEFIYENVWDLHLMRVMWWTKAWWKGCPYSTTDFYQILKTLKL 315



 Score = 80.1 bits (196), Expect(2) = 5e-52
 Identities = 40/80 (50%), Positives = 52/80 (65%)
 Frame = +3

Query: 897 HFEKIRIKVAAPKVHSADWCPPPPGCLKFNVDGSSRGNSGVSGIGGVLKDANSTMLGRFS 956
           +FE I+       V +  WCPP    LKFNVDGS+RG+ G+SG GG+L++A S +LGRFS
Sbjct: 294 NFENIKTVGKMRMVRNCVWCPPEANILKFNVDGSARGSPGISGAGGILRNAESAVLGRFS 473

Query: 957 CAVGSTWAYVAERKALLEGL 976
             +G   AY AE KA+L  L
Sbjct: 474 KPLGVLCAYQAEVKAILLAL 533


>BP033684 
          Length = 557

 Score =  155 bits (392), Expect = 3e-38
 Identities = 71/144 (49%), Positives = 90/144 (62%)
 Frame = -1

Query: 825 EWSSLRAISDPIMWEIIPYAMFWSIWRARNDLVFNQKDFSADYIWDLHLIRVMWWIKSWW 884
           EWSS+   SDP++W +I YA+ WS+W  R   VF  K  S+  +WDLHL+ + WWIK+ W
Sbjct: 557 EWSSIVVASDPMLWNLILYALVWSLWLERKQSVFKGKLASSQEVWDLHLMTIFWWIKAVW 378

Query: 885 KECPFTVLDFSQHFEKIRIKVAAPKVHSADWCPPPPGCLKFNVDGSSRGNSGVSGIGGVL 944
           KECP+    F + F  +  K   PK     W PP  G LKFNVDG+S+GN G SG+GGVL
Sbjct: 377 KECPYNFDQFHRDFCMLSFKKLIPKQRLKGWTPPSRGILKFNVDGASQGNPGPSGVGGVL 198

Query: 945 KDANSTMLGRFSCAVGSTWAYVAE 968
            D  S +LG FS  +G  WAY AE
Sbjct: 197 CDYRSMVLGFFSINMGHGWAYEAE 126


>BI418523 
          Length = 496

 Score =  117 bits (294), Expect = 7e-27
 Identities = 56/131 (42%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
 Frame = +1

Query: 853 RNDLVFNQKDFSADYIWDLHLIRVMWWIKSWWKECPFTVLDFSQHFEKIRI--KVAAPKV 910
           RN  +F  K+  +  +WD HL+++ WWIKS W+EC + +    Q+   IRI  K+  P+ 
Sbjct: 1   RNAYIFRGKEIVSTEVWDSHLLKLSWWIKSMWRECHYDIYQIMQNLGDIRITPKLKPPRC 180

Query: 911 HSADWCPPPPGCLKFNVDGSSRGNSGVSGIGGVLKDANSTMLGRFSCAVGSTWAYVAERK 970
            S  W PP  G +K NVDG+S+GN G SG+GGV +DAN  +LG FS   G+ WAY A+ +
Sbjct: 181 WS--WSPPSAGFIKCNVDGASQGNPGPSGVGGVFRDANRKILGYFSLNSGNGWAYEAKVR 354

Query: 971 ALLEGLLLCGK 981
           ++L  L+   K
Sbjct: 355 SILNALVFIQK 387


>BP051903 
          Length = 342

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 33/77 (42%), Positives = 50/77 (64%)
 Frame = +2

Query: 53  VDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRMNG 112
           VDG+ D+T + Q++  FA FGR++ VFVQ  ++  R  +FGFVRF+    A  A+  +NG
Sbjct: 68  VDGIPDRTDYYQIRGLFAQFGRVVNVFVQRQRKIGRLFRFGFVRFASLEVASKAIDFLNG 247

Query: 113 SILNGATINVSLARLPQ 129
             L  A ++VS+AR P+
Sbjct: 248 FRLGDAALSVSMARFPR 298


>TC12327 
          Length = 568

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = +1

Query: 705 ETKMDVHRNKVLLGWATSMDMGLEIVPAVGSAGGLVTLWKTSLFQVSQ 752
           E+K+D +R K ++ WA S+ M  E VPA+G AGGLV+LW+ S F+V Q
Sbjct: 1   ESKLDENRKKTIVSWAKSIGMEFEFVPAIGVAGGLVSLWRKSTFKVVQ 144


>BP078889 
          Length = 474

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 32/92 (34%), Positives = 49/92 (52%)
 Frame = +1

Query: 35  GNNRRADGIHRRIGKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGF 94
           G   R +G  RR   + FVDG+ +   +  ++  FA FGRI  +FVQ   +  RR +FGF
Sbjct: 196 GGLNRNNGGERRRKPTPFVDGIEEAIEYHHLRGLFALFGRISNLFVQRKHKFGRRFRFGF 375

Query: 95  VRFSFDSDAEVAMRRMNGSILNGATINVSLAR 126
           VRF  +  A      ++G  + G  ++V+ AR
Sbjct: 376 VRFFSEEQAAAVAFVLDGLRVGGTALSVAPAR 471


>TC18897 weakly similar to UP|Q9XEV3 (Q9XEV3) TIA-1 related protein, partial
           (5%)
          Length = 481

 Score = 54.7 bits (130), Expect = 7e-08
 Identities = 23/66 (34%), Positives = 41/66 (61%)
 Frame = +1

Query: 50  SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
           +LF+DG+++ T +  ++  F   G +L VF+Q  +R +R  +FGFVR+S    A +A+  
Sbjct: 280 TLFIDGISEPTNYYHIRGLFGQIGSLLNVFLQKQRRIRRNFRFGFVRYSTRDVASMAINL 459

Query: 110 MNGSIL 115
            NG ++
Sbjct: 460 FNGVLM 477


>BG662008 
          Length = 457

 Score = 48.5 bits (114), Expect(2) = 3e-07
 Identities = 22/48 (45%), Positives = 32/48 (65%)
 Frame = +3

Query: 50  SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRF 97
           +LFVDG++D   + Q++  F+  G +L VFVQ  +R  R  +FGFVRF
Sbjct: 102 TLFVDGISDFVDYSQIRGLFSHIGSLLNVFVQRQRRIGRAFRFGFVRF 245



 Score = 23.9 bits (50), Expect(2) = 3e-07
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = +2

Query: 111 NGSILNGATINVSLARLPQ 129
           NG+++ G+ ++V+LAR P+
Sbjct: 269 NGALVGGSFLSVALARFPR 325


>TC11323 
          Length = 657

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 27/65 (41%), Positives = 35/65 (53%)
 Frame = +2

Query: 915 WCPPPPGCLKFNVDGSSRGNSGVSGIGGVLKDANSTMLGRFSCAVGSTWAYVAERKALLE 974
           W  P  G  K N DGSS GN G +G GG+L+D +S  +  FS  +           A+LE
Sbjct: 5   WLKPVHGRFKLNFDGSSLGNRGNAGGGGLLRDGSSNFIFGFSIFLAVAQIMKLSLCAILE 184

Query: 975 GLLLC 979
           GLL+C
Sbjct: 185 GLLVC 199


>TC14392 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (77%)
          Length = 1576

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 29/93 (31%), Positives = 49/93 (52%)
 Frame = +3

Query: 50   SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
            ++FV  L    T   ++  F  +G ++ V +   KR       GFV+F+  S AE A+R 
Sbjct: 945  TIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKR------CGFVQFADRSCAEEALRV 1106

Query: 110  MNGSILNGATINVSLARLPQDQHTRPRPTDNQW 142
            +NG++L G  + +S  R P ++ T+  P  +QW
Sbjct: 1107 LNGTLLGGQNVRLSWGRSPSNKQTQSDP--SQW 1199



 Score = 29.3 bits (64), Expect = 3.2
 Identities = 19/77 (24%), Positives = 34/77 (43%), Gaps = 1/77 (1%)
 Frame = +3

Query: 50  SLFVDGLTDQTTHLQVKNAFAS-FGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMR 108
           ++FV  L    T   +   F + +  + G  V   +   R   +GFVRF+ +S+   AM 
Sbjct: 618 TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMT 797

Query: 109 RMNGSILNGATINVSLA 125
            M G + +   + +  A
Sbjct: 798 EMQGVVCSTRPMRIGPA 848


>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
           partial (93%)
          Length = 725

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 27/75 (36%), Positives = 40/75 (53%)
 Frame = +1

Query: 52  FVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRMN 111
           FV GL   T    ++ AF+S+G I+   V N +   R   FGFV F+ +     A+  MN
Sbjct: 91  FVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEAMRSAIEGMN 270

Query: 112 GSILNGATINVSLAR 126
           G+ L+G  I V+ A+
Sbjct: 271 GNELDGRNITVNEAQ 315


>TC14208 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (41%)
          Length = 837

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 25/86 (29%), Positives = 45/86 (52%)
 Frame = +2

Query: 50  SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
           ++FV  L        ++  F+ +G ++ V +   KR       GFV+F+  S AE A+R 
Sbjct: 194 TIFVGNLDPNVNDDHLRQVFSPYGELVHVKIPAGKR------CGFVQFADRSGAEEALRV 355

Query: 110 MNGSILNGATINVSLARLPQDQHTRP 135
           +NG++L G  + +S  R P ++  +P
Sbjct: 356 LNGTLLGGQNVRLSWGRSPSNKQAQP 433


>TC15623 similar to UP|P93486 (P93486) Glycine-rich RNA-binding protein
           PsGRBP, partial (88%)
          Length = 683

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 30/86 (34%), Positives = 42/86 (47%)
 Frame = +1

Query: 51  LFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRM 110
           LF+ GL+       +++AF+SFG +    V   +   R   FGFV F  +  A  A+  M
Sbjct: 190 LFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFGFVSFDSEESASSALSSM 369

Query: 111 NGSILNGATINVSLARLPQDQHTRPR 136
           +G  LNG  I VS A    D+   PR
Sbjct: 370 DGQDLNGRNIRVSYA---NDRPAGPR 438


>AV428268 
          Length = 429

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = +3

Query: 750 VSQQLMECNIAVKASLIRRGIPIENGGLCDICGLIGESESHLMLHCPKIWLLWTTILARE 809
           +S +++   +  K +L RRG+ I N  +C +C L  ES  HL+  CP +  +W+ I    
Sbjct: 114 LSWKVLINRVQTKVNLNRRGVVISN--VCPLCSLDEESTDHLLFSCPIV*RIWSKISE*F 287

Query: 810 EVYCCFPSSIQGLLLE 825
            V+  FP+   G  L+
Sbjct: 288 GVFSVFPNDSHGHFLQ 335


>AV427022 
          Length = 429

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
 Frame = +1

Query: 777 LCDICGLIGESESHLMLHCPKIWLL------W----TTILAREEVYCCFPSSIQGLLLEW 826
           +C +C L  ES SHL+  C    L+      W    T  ++  +V+    SSI      W
Sbjct: 37  ICPLCCLAEESGSHLLFSCSNSMLI*YECHAWLGVSTAQVSDPKVHLLQFSSIG-----W 201

Query: 827 SSLRAISDPIMWEIIPYAMFWSIWRARNDLVFNQKDFSADYIWDLHLIRVMWWIKS 882
           S  + + +  +W     ++ WSIW  RN +VFN  +   D + +   +    W++S
Sbjct: 202 SKAQKLGESAIW----MSVLWSIWCLRNMVVFNGGELDKDQLLEQIQVTAWRWLRS 357


>AV418280 
          Length = 398

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 30/126 (23%), Positives = 46/126 (35%), Gaps = 11/126 (8%)
 Frame = -2

Query: 778 CDICGLIGESESHLMLHCPKIWLLWTTILAREEVYCCFPSSIQGLLLEWSSLRAISDPIM 837
           C  C  + E   HL   C     +W  +     +    P+S      ++S      +  +
Sbjct: 388 CPFCTTVEECSGHLFFTCVFSMGVWQALHRWLGISVALPASTLANFAQFSITARNKNQRL 209

Query: 838 WEI-IPYAMFWSIWRARNDLVFNQKDFSADYIWDLHLIRVMWWIKS----------WWKE 886
            E+ I  A  WS+W  RN ++F        Y+ DL   R   W+K+           WK 
Sbjct: 208 GELAIWIATVWSLWIQRNSIIFRNNALDHSYLLDLIQSRSWHWLKAKFCGFTYSLYEWKS 29

Query: 887 CPFTVL 892
           CP   L
Sbjct: 28  CPLECL 11


>BI419822 
          Length = 380

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 26/75 (34%), Positives = 40/75 (52%)
 Frame = +2

Query: 52  FVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRMN 111
           FV GL   T +  ++ AF+ +G I+   V N +   R   FGFV F+ +   + A+  MN
Sbjct: 86  FVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFASEQAMKDAIEAMN 265

Query: 112 GSILNGATINVSLAR 126
           G  L+G  I V+ A+
Sbjct: 266 GQNLDGRNITVNEAQ 310


>TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
           (85%)
          Length = 1917

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 27/87 (31%), Positives = 42/87 (48%)
 Frame = +2

Query: 48  GKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAM 107
           G +L+V  L D     ++K  F+S+G I    V        R   GFV FS   +A  A+
Sbjct: 671 GANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGS-GFVAFSTPEEASRAL 847

Query: 108 RRMNGSILNGATINVSLARLPQDQHTR 134
             MNG ++    + V+LA+  +D+  R
Sbjct: 848 LEMNGKMVVSKPLYVTLAQRKEDRRAR 928



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 23/86 (26%), Positives = 42/86 (48%)
 Frame = +2

Query: 37  NRRADGIHRRIGKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVR 96
           + R   I +    ++F+  L     H  + + F++FG IL   V      Q +  +GFV+
Sbjct: 56  SHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSTFGNILSCKVATDSSGQSKG-YGFVQ 232

Query: 97  FSFDSDAEVAMRRMNGSILNGATINV 122
           F  +  A+ A+ ++NG +LN   + V
Sbjct: 233 FETEEAAQNAIEKLNGMLLNDKQVYV 310



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 50  SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSK-FGFVRFSFDSDAEVAMR 108
           ++FV  L++ TT  ++KN F  FG I    V  ++    +SK FGFV F    DA  A+ 
Sbjct: 368 NVFVKNLSESTTDDELKNVFGEFGTITSAVV--MRDGDGKSKCFGFVNFENADDAARAVE 541

Query: 109 RMNG 112
            +NG
Sbjct: 542 SLNG 553


>AI967582 
          Length = 356

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 22/51 (43%), Positives = 30/51 (58%)
 Frame = +2

Query: 78  VFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRMNGSILNGATINVSLARLP 128
           VFVQ      RR  FGFV F   SDA  A+ R+NG  + GA ++V+++  P
Sbjct: 20  VFVQRKHEVGRRFHFGFVHFLSWSDAXTAVARLNGMKIGGAHLSVTVSTFP 172


>TC19849 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, partial
           (30%)
          Length = 603

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 23/87 (26%), Positives = 43/87 (48%)
 Frame = +2

Query: 48  GKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAM 107
           G +L++  L D     +++  F+ FG I    +        R   GFV FS   +A  A+
Sbjct: 233 GANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGS-GFVAFSTPEEATRAL 409

Query: 108 RRMNGSILNGATINVSLARLPQDQHTR 134
             MNG +++G  + V+LA+  +++  +
Sbjct: 410 GEMNGKMVDGKPLYVALAQKKEERRAK 490


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,808,928
Number of Sequences: 28460
Number of extensions: 297204
Number of successful extensions: 2213
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 2108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2201
length of query: 989
length of database: 4,897,600
effective HSP length: 99
effective length of query: 890
effective length of database: 2,080,060
effective search space: 1851253400
effective search space used: 1851253400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)