BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0403.9
(139 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8906 similar to UP|AAQ24852 (AAQ24852) 10 kDa photosystem II p... 278 3e-76
TC9151 28 0.58
TC8793 homologue to UP|ENPL_CATRO (P35016) Endoplasmin homolog p... 27 1.3
AV420326 27 1.3
BP056744 27 1.3
TC12134 UP|IM23_DROME (Q9V8F5) Immune-induced peptide 23 precurs... 27 1.3
BP042367 25 3.7
TC9924 UP|RBL_LOTJA (Q9BBU1) Ribulose bisphosphate carboxylase l... 25 3.7
TC19403 similar to UP|O82651 (O82651) Squamosa-promoter binding ... 25 3.7
TC14653 weakly similar to UP|Q9FLU7 (Q9FLU7) Phloem-specific lec... 25 4.9
TC10382 weakly similar to UP|Q9SKP5 (Q9SKP5) At2g21180 protein (... 25 4.9
AV767184 25 4.9
TC19033 similar to UP|Q8H6X8 (Q8H6X8) GSK-3-like protein MsK4, p... 25 4.9
AV407432 25 6.4
TC9253 weakly similar to UP|Q9XI93 (Q9XI93) F7A19.2 protein (F16... 24 8.4
>TC8906 similar to UP|AAQ24852 (AAQ24852) 10 kDa photosystem II
polypeptide, complete
Length = 656
Score = 278 bits (710), Expect = 3e-76
Identities = 139/139 (100%), Positives = 139/139 (100%)
Frame = +2
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL
Sbjct: 20 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 199
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL
Sbjct: 200 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 379
Query: 121 LGLLAGGALLVYNTSALSQ 139
LGLLAGGALLVYNTSALSQ
Sbjct: 380 LGLLAGGALLVYNTSALSQ 436
>TC9151
Length = 1236
Score = 28.1 bits (61), Expect = 0.58
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -3
Query: 41 SGGKK----IKTDTPYGTGGGMNLRNGVDASGRK 70
+GGK ++ TP+G GGG N R G+ GR+
Sbjct: 286 AGGKAEPSGVRGATPFGDGGGWNRRMGLGE*GRR 185
>TC8793 homologue to UP|ENPL_CATRO (P35016) Endoplasmin homolog precursor
(GRP94 homolog), partial (12%)
Length = 576
Score = 26.9 bits (58), Expect = 1.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 3 SSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASG 42
+S AS++ PAG ++ SS L + + S+S VASG
Sbjct: 373 TSASASLTASPAGSEVDASSFVSLSASTSVSSSSSTVASG 254
>AV420326
Length = 416
Score = 26.9 bits (58), Expect = 1.3
Identities = 21/66 (31%), Positives = 28/66 (41%)
Frame = -2
Query: 54 TGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGL 113
+GGG +G AS R V V G N G Y + + T V GGT G+
Sbjct: 202 SGGGSGAFDGGLASSSTARSASVIIVVG--GRNRSGNGNGYSSPQ-TKTVVVGGGGTEGI 32
Query: 114 AIWAVT 119
+W +T
Sbjct: 31 GVWQIT 14
>BP056744
Length = 462
Score = 26.9 bits (58), Expect = 1.3
Identities = 15/40 (37%), Positives = 24/40 (59%)
Frame = +2
Query: 3 SSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASG 42
+S AS++ PAG ++ SS+ LP+ + S+ VASG
Sbjct: 212 TSASASLTASPAGPEVDASSLVSLPASTSVSSPSSRVASG 331
>TC12134 UP|IM23_DROME (Q9V8F5) Immune-induced peptide 23 precursor
(DIM-23), partial (9%)
Length = 434
Score = 26.9 bits (58), Expect = 1.3
Identities = 14/36 (38%), Positives = 18/36 (49%), Gaps = 6/36 (16%)
Frame = -3
Query: 53 GTGGGMNLRNGVDASGRKPRGKGV------YQYVDK 82
G GGG+N +NG + K + V Y YVDK
Sbjct: 408 GGGGGLNTKNGSNIDSFKQMDRNVEREPKIYNYVDK 301
>BP042367
Length = 465
Score = 25.4 bits (54), Expect = 3.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -3
Query: 25 GLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQY 79
G+ S S+ GG I+ D + ++R + ASG +P +G Y Y
Sbjct: 175 GVLRYSNSAGQVSGPPPGGPTIQVD--WSLNQARSIRTNLTASGPRPNPQGSYHY 17
>TC9924 UP|RBL_LOTJA (Q9BBU1) Ribulose bisphosphate carboxylase large chain
precursor (RuBisCO large subunit) , complete
Length = 1592
Score = 25.4 bits (54), Expect = 3.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 14 AGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYG 53
+G L+ S + LPS +RS SFR + + T G
Sbjct: 1525 SGLHLDASRIISLPSRARSRPSFRACTHASRATRLATAPG 1406
>TC19403 similar to UP|O82651 (O82651) Squamosa-promoter binding
protein-like 1, partial (5%)
Length = 499
Score = 25.4 bits (54), Expect = 3.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 105 VYAGGTTGLAIWAVTLLGLLAGGALLVYN 133
+YA G G W++ LL LL++N
Sbjct: 259 IYAYGAGGFPAWSINLLNCCCFAELLLFN 345
>TC14653 weakly similar to UP|Q9FLU7 (Q9FLU7) Phloem-specific lectin-like
protein, partial (45%)
Length = 643
Score = 25.0 bits (53), Expect = 4.9
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 53 GTGGGMNLRN-GVDASGRKPRGKGV 76
G GGG +RN GV+ G+KP GV
Sbjct: 289 GGGGGGRMRNDGVEIIGQKPIPNGV 215
>TC10382 weakly similar to UP|Q9SKP5 (Q9SKP5) At2g21180 protein
(At2g21180/F26H11.6), partial (66%)
Length = 824
Score = 25.0 bits (53), Expect = 4.9
Identities = 12/36 (33%), Positives = 17/36 (46%)
Frame = +2
Query: 86 NVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLL 121
N D +S + WS G +Y G + G + W V L
Sbjct: 371 NTDWFSGL---SPWSGRGRIYEGSSEGSSPWGVAAL 469
>AV767184
Length = 303
Score = 25.0 bits (53), Expect = 4.9
Identities = 11/23 (47%), Positives = 13/23 (55%)
Frame = -3
Query: 51 PYGTGGGMNLRNGVDASGRKPRG 73
P G GGG L +GR+PRG
Sbjct: 271 PGGAGGGHRLSWAPGPTGRRPRG 203
>TC19033 similar to UP|Q8H6X8 (Q8H6X8) GSK-3-like protein MsK4, partial
(18%)
Length = 665
Score = 25.0 bits (53), Expect = 4.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 5 VMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRV 38
VMAS SL G +S VRG S S +S S V
Sbjct: 305 VMASASLGNGGVGSSRSVVRGGSSSSSTSTSTSV 406
>AV407432
Length = 428
Score = 24.6 bits (52), Expect = 6.4
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = -2
Query: 90 YSPIYDTKDWSPTGDVYAG 108
+ P+YDT D+S T Y G
Sbjct: 121 FIPLYDTADYSNTCSAYCG 65
>TC9253 weakly similar to UP|Q9XI93 (Q9XI93) F7A19.2 protein (F16A14.14)
(AT1G13930/F16A14.27), partial (46%)
Length = 745
Score = 24.3 bits (51), Expect = 8.4
Identities = 22/92 (23%), Positives = 35/92 (37%), Gaps = 6/92 (6%)
Frame = +1
Query: 7 ASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKI------KTDTPYGTGGGMNL 60
+S++ A + +K + S S AS +VV+ + K D +L
Sbjct: 40 SSLTTAMASETPDKPTAEEKYSTSELLASAKVVSEASQAALRNESDKVDKAKAADAAGDL 219
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSP 92
+ + KGV QYVDK + Y P
Sbjct: 220 LDAASQYAKLDEQKGVGQYVDKAADYLHDYKP 315
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,037,756
Number of Sequences: 28460
Number of extensions: 25265
Number of successful extensions: 90
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of query: 139
length of database: 4,897,600
effective HSP length: 81
effective length of query: 58
effective length of database: 2,592,340
effective search space: 150355720
effective search space used: 150355720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)
Lotus: description of TM0403.9