TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0403.8
         (117 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...    84  5e-18
BP046665                                                               79  2e-16
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...    75  4e-15
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    66  2e-12
BP065488                                                               48  4e-07
AV417335                                                               26  2.0
BP035160                                                               25  3.4
TC10841 homologue to UP|Q9AU01 (Q9AU01) Phosphate transporter 1,...    25  4.4
AV766222                                                               24  5.8
TC9055                                                                 24  7.6
AV769785                                                               23  9.9
TC8235 similar to UP|Q9LMR0 (Q9LMR0) F7H2.8 protein, partial (27%)     23  9.9
BP074960                                                               23  9.9

>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
           protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score = 84.3 bits (207), Expect = 5e-18
 Identities = 40/64 (62%), Positives = 48/64 (74%)
 Frame = +1

Query: 54  MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINNNQGQSLSHV 113
           +I ATV  G  +G   +IPR+ +  SDSG PFKF RR F ++LCFAMTIN +QGQSLSHV
Sbjct: 106 VIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCFAMTINKSQGQSLSHV 285

Query: 114 SLYL 117
           SLYL
Sbjct: 286 SLYL 297


>BP046665 
          Length = 524

 Score = 79.0 bits (193), Expect = 2e-16
 Identities = 38/64 (59%), Positives = 46/64 (71%)
 Frame = -1

Query: 54  MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINNNQGQSLSHV 113
           +I ATV     +G   +IPR+ +  SDSG PFKF RRQF ++LC AMTIN +QGQSLSHV
Sbjct: 386 VIKATVIT*TNIGDDIFIPRMDMVPSDSGYPFKFERRQFPISLCSAMTINKSQGQSLSHV 207

Query: 114 SLYL 117
            LYL
Sbjct: 206 GLYL 195


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
           (8%)
          Length = 634

 Score = 74.7 bits (182), Expect = 4e-15
 Identities = 36/63 (57%), Positives = 43/63 (68%)
 Frame = +2

Query: 55  IVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINNNQGQSLSHVS 114
           I  TV  G  +G    IPR+ +  SDS  PFKF RRQ  ++LCFAMTIN +QG+SLSHV 
Sbjct: 137 IQVTVITGTHIGDDISIPRMDMVPSDSSYPFKFERRQSPISLCFAMTINKSQGRSLSHVG 316

Query: 115 LYL 117
           LYL
Sbjct: 317 LYL 325


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 30/54 (55%), Positives = 38/54 (69%)
 Frame = +1

Query: 54  MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINNNQG 107
           +I ATV  G  +G   +IPR+ +  SDSG PFKF RR F ++LCFAMTIN +QG
Sbjct: 214 VIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCFAMTINKSQG 375


>BP065488 
          Length = 439

 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = -1

Query: 66  GKTAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTINNNQ 106
           G   +IPR+++  S SG P KF R QF ++LCFAMTIN +Q
Sbjct: 379 GDDIFIPRMNMVPSVSGDPLKFERCQFPISLCFAMTINKSQ 257


>AV417335 
          Length = 428

 Score = 25.8 bits (55), Expect = 2.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 60  FPGNKLGKTAYIPRISLTSSDSGLPFK 86
           FPG   GKT   P + +  +D   PFK
Sbjct: 415 FPGTTSGKTLVSPSVVVILNDKDWPFK 335


>BP035160 
          Length = 482

 Score = 25.0 bits (53), Expect = 3.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 83  LPFKFSRRQFLVTLCFAMTINNNQGQSLSHVSL 115
           LP    RR  + + CF + +   +G  LSHV L
Sbjct: 274 LPVP*IRRTLVASHCFPLWLKVEEGHCLSHVLL 372


>TC10841 homologue to UP|Q9AU01 (Q9AU01) Phosphate transporter 1, partial
           (59%)
          Length = 991

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 62  GNKLG-KTAY---IPRISLTSSDSGLPFKFSRRQFLVTLCF 98
           G+KLG K  Y   +  + + S  SGL F  S +  + TLCF
Sbjct: 192 GDKLGRKKVYGMTLMMMVICSIGSGLSFGHSPKSVMATLCF 314


>AV766222 
          Length = 260

 Score = 24.3 bits (51), Expect = 5.8
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 59  VFPGNKLGKTAYIPRIS 75
           V  GNK+G+T+ +PR++
Sbjct: 258 VVSGNKMGRTSSLPRVA 208


>TC9055 
          Length = 577

 Score = 23.9 bits (50), Expect = 7.6
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
 Frame = -1

Query: 56  VATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVTL-------CFAMTINNNQGQ 108
           + T FPGNK+G    I +      +  L    SRRQ   TL       C    +  N  Q
Sbjct: 214 ILTHFPGNKMGSLKVIKKAKAIPQNLYL----SRRQLRSTLR**Q*PVCLLTHVKGNNHQ 47

Query: 109 SL 110
            L
Sbjct: 46  LL 41


>AV769785 
          Length = 600

 Score = 23.5 bits (49), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 84  PFKFSRRQFLVTLCFAMTINNNQ 106
           P+  +R +FLVT    + I NNQ
Sbjct: 94  PYTAARTRFLVTFLCFLRIRNNQ 26


>TC8235 similar to UP|Q9LMR0 (Q9LMR0) F7H2.8 protein, partial (27%)
          Length = 847

 Score = 23.5 bits (49), Expect = 9.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 71  IPRISLTSSDSGLPFKFSRRQFLVTLCF 98
           IP+  L+S  SG     S RQFL  LCF
Sbjct: 263 IPKFYLSSCHSGTGLAGSGRQFL--LCF 186


>BP074960 
          Length = 439

 Score = 23.5 bits (49), Expect = 9.9
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 70  YIPRISLTSSDSGLPFKFSRRQ--FLVTLCFAMTINN 104
           +I  +SLT  +S  P+K ++R+  F    C +  +NN
Sbjct: 266 FILSLSLTRKNSWFPYKGTKRELNFTYIPCLS*VLNN 156


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.353    0.153    0.503 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,818,723
Number of Sequences: 28460
Number of extensions: 20049
Number of successful extensions: 190
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of query: 117
length of database: 4,897,600
effective HSP length: 78
effective length of query: 39
effective length of database: 2,677,720
effective search space: 104431080
effective search space used: 104431080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 49 (23.5 bits)