TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0403.5
         (44 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP042300                                                               50  8e-08
BI419208                                                               41  6e-05
AV407690                                                               34  0.006
BP043024                                                               30  0.14
TC18162 similar to UP|Q94II3 (Q94II3) ERD3 protein, partial (5%)       27  1.2
BP052757                                                               27  1.2
TC9576 similar to UP|O23292 (O23292) Ankyrin homolog (Ankyrin li...    26  1.5
TC18778 similar to UP|Q8RY18 (Q8RY18) AT5g43560/K9D7_6, partial ...    23  9.8

>BP042300 
          Length = 119

 Score = 50.4 bits (119), Expect = 8e-08
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = -3

Query: 1  GKLLLELNRVLRPGGFFVWSTTPVYHKL 28
          G LLLELNR+LRPGG+FVWS TPVY  L
Sbjct: 84 GLLLLELNRLLRPGGYFVWSATPVYQTL 1


>BI419208 
          Length = 361

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 20/43 (46%), Positives = 28/43 (64%)
 Frame = +3

Query: 1   GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSLLC 43
           GKLLLE+NR+LRPGG+F+ ST    H   E  E    +++ +C
Sbjct: 210 GKLLLEMNRILRPGGYFIMSTK---HDSFEQEEAMTMLTASIC 329


>AV407690 
          Length = 427

 Score = 34.3 bits (77), Expect = 0.006
 Identities = 14/27 (51%), Positives = 21/27 (76%)
 Frame = +3

Query: 1   GKLLLELNRVLRPGGFFVWSTTPVYHK 27
           GK L+E++RVLRPGG+++ S  P+  K
Sbjct: 237 GKYLMEVDRVLRPGGYWILSGPPINWK 317


>BP043024 
          Length = 447

 Score = 29.6 bits (65), Expect = 0.14
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 1   GKLLLELNRVLRPGGFFVWSTTPVYHKL 28
           G  ++E++RVLRPGG++V S  P   +L
Sbjct: 111 GIYMMEVDRVLRPGGYWVLSGPPSIGRL 28


>TC18162 similar to UP|Q94II3 (Q94II3) ERD3 protein, partial (5%)
          Length = 559

 Score = 26.6 bits (57), Expect = 1.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 3   LLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSLL 42
           +++E++R+LRPGG+ +         + + VEI N +  +L
Sbjct: 79  IVVEMDRILRPGGWTI---------IRDKVEILNALEEIL 171


>BP052757 
          Length = 423

 Score = 26.6 bits (57), Expect = 1.2
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = -3

Query: 3   LLLELNRVLRPGGFFV 18
           +LLE++R+LRPGG+ +
Sbjct: 397 VLLEMDRILRPGGYAI 350


>TC9576 similar to UP|O23292 (O23292) Ankyrin homolog (Ankyrin like
          protein), partial (8%)
          Length = 529

 Score = 26.2 bits (56), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 3  LLLELNRVLRPGGFFVWSTTP 23
          LLLE++R+LRP GF +    P
Sbjct: 4  LLLEMDRMLRPTGFIIIRDKP 66


>TC18778 similar to UP|Q8RY18 (Q8RY18) AT5g43560/K9D7_6, partial (17%)
          Length = 738

 Score = 23.5 bits (49), Expect = 9.8
 Identities = 12/36 (33%), Positives = 17/36 (46%)
 Frame = +2

Query: 9   RVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSLLCI 44
           R LR   F V S        P+  ++CN +S  LC+
Sbjct: 389 RELRSSAFEVGSYKWYILIYPQGCDVCNHLSLFLCV 496


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.146    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,083,237
Number of Sequences: 28460
Number of extensions: 11464
Number of successful extensions: 57
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of query: 44
length of database: 4,897,600
effective HSP length: 20
effective length of query: 24
effective length of database: 4,328,400
effective search space: 103881600
effective search space used: 103881600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)