BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0400a.6
(619 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15264 homologue to UP|DHSA_ARATH (O82663) Succinate dehydrogen... 229 8e-61
BE122635 215 1e-56
TC9913 similar to UP|Q94AY1 (Q94AY1) AT5g14760/T9L3_60, partial ... 186 7e-48
BP058222 42 2e-04
TC16100 similar to UP|DHSA_ARATH (O82663) Succinate dehydrogenas... 34 0.061
TC8376 homologue to UP|O65808 (O65808) Magnesium chelatase subun... 30 0.88
TC17389 homologue to UP|Q9LJK5 (Q9LJK5) Dem protein, partial (12%) 28 4.4
TC10886 similar to UP|Q8GSM8 (Q8GSM8) Squalene monooxygenase 1 ... 27 7.4
TC13991 similar to UP|Q9SW88 (Q9SW88) Amine oxidase, partial (15%) 27 7.4
TC17904 similar to UP|Q8L7V5 (Q8L7V5) AT3g52870/F8J2_40, partial... 27 7.4
TC14145 similar to UP|Q7XXS4 (Q7XXS4) Thiamine biosynthetic enzy... 27 9.7
TC11727 similar to UP|Q84Y10 (Q84Y10) Carbonic anhydrase 2 , pa... 27 9.7
TC18124 similar to GB|BAB10858.1|10177467|AB009053 permease 1 {A... 27 9.7
TC8986 UP|Q40214 (Q40214) RAB7D, complete 27 9.7
>TC15264 homologue to UP|DHSA_ARATH (O82663) Succinate dehydrogenase
[ubiquinone] flavoprotein subunit, mitochondrial (FP)
(Flavoprotein subunit of complex II) , partial (77%)
Length = 1643
Score = 229 bits (585), Expect = 8e-61
Identities = 153/420 (36%), Positives = 220/420 (51%), Gaps = 28/420 (6%)
Frame = +1
Query: 59 FDFVVIGSGIAGLRYALEVAKYG-SVAVITKAESHECNTNYAQGGVSAVL--CPSDSVEN 115
+D +V+G+G AGLR A+ ++++G + A ITK +T AQGG++A L D
Sbjct: 223 YDAIVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRW 402
Query: 116 HMKDTIVAGAYLCDEESVRVVCTEGPERVRELIAMGASFDHGEDGNLHLMREGGHSHR-- 173
HM DTI +L D+++++ +C E P+ V EL G F EDG ++ GG S
Sbjct: 403 HMYDTIKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFG 582
Query: 174 ------RIVHAADMTGKEIERALLKAAVNNPNIFVFEHHFAIDLLTSQDGSDIICLGADI 227
R AAD TG + L A+ + F F +FA+DLL + +GS C G
Sbjct: 583 KGGQAYRCACAADRTGHALLHTLYGQAMKHNTQF-FVEYFALDLLMNSEGS---CQGVIA 750
Query: 228 LNTETLEVVRFLSKVTLLASGGAGHIYPKTTNPLVATGDGIAMAHRAQAVISNMEFVQFH 287
LN E + RF + T+LA+GG G Y T+ TGDG AM RA + + EFVQFH
Sbjct: 751 LNMEDGTLHRFQASSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDQEFVQFH 930
Query: 288 PTALADEGLPIKPTKLRDNAFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVA 346
PT + G L++E RG+GGIL N ERFM Y A +LA RDVV+
Sbjct: 931 PTGIYGAGC------------LVSEGCRGEGGILRNSEGERFMERYAPTAKDLASRDVVS 1074
Query: 347 RSIDDQLKK-----RDDKYVLLDISHKPKEEILSHFPNIASFCLQY-GLDITRHPIPVVP 400
RS+ ++++ + ++ L ++H P + + P I+ + G+D+T+ PIPV+P
Sbjct: 1075RSMTMEIREGRGVGKHKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLP 1254
Query: 401 AAHYMCGGVRAGLEGE----------TNVQGLYVAGEVACTGLHGANRLASNSLLEALVF 450
HY GG+ GE V GL AGE AC +HG+NRL +NSLL+ +VF
Sbjct: 1255TVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGSNRLGANSLLDIVVF 1434
>BE122635
Length = 341
Score = 215 bits (548), Expect = 1e-56
Identities = 108/108 (100%), Positives = 108/108 (100%)
Frame = +1
Query: 389 LDITRHPIPVVPAAHYMCGGVRAGLEGETNVQGLYVAGEVACTGLHGANRLASNSLLEAL 448
LDITRHPIPVVPAAHYMCGGVRAGLEGETNVQGLYVAGEVACTGLHGANRLASNSLLEAL
Sbjct: 16 LDITRHPIPVVPAAHYMCGGVRAGLEGETNVQGLYVAGEVACTGLHGANRLASNSLLEAL 195
Query: 449 VFARRAVQPSVDQMKSSSLDLTASNLWPRPIVPLSLESDVMNKILSLT 496
VFARRAVQPSVDQMKSSSLDLTASNLWPRPIVPLSLESDVMNKILSLT
Sbjct: 196 VFARRAVQPSVDQMKSSSLDLTASNLWPRPIVPLSLESDVMNKILSLT 339
>TC9913 similar to UP|Q94AY1 (Q94AY1) AT5g14760/T9L3_60, partial (11%)
Length = 668
Score = 186 bits (473), Expect = 7e-48
Identities = 87/87 (100%), Positives = 87/87 (100%)
Frame = +2
Query: 533 KWEEYLFQHGWKPTMVAPEICEMRNLFCCAKLVVSSALSRHESRGLHYTIDFPYLEESER 592
KWEEYLFQHGWKPTMVAPEICEMRNLFCCAKLVVSSALSRHESRGLHYTIDFPYLEESER
Sbjct: 2 KWEEYLFQHGWKPTMVAPEICEMRNLFCCAKLVVSSALSRHESRGLHYTIDFPYLEESER 181
Query: 593 LPTIIFPSSRVKSTRSFRQLHKQPICQ 619
LPTIIFPSSRVKSTRSFRQLHKQPICQ
Sbjct: 182 LPTIIFPSSRVKSTRSFRQLHKQPICQ 262
>BP058222
Length = 380
Score = 42.4 bits (98), Expect = 2e-04
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -1
Query: 593 LPTIIFPSSRVKSTRSFRQLHKQPIC 618
LPTI FPS RVKSTR FR +H+ P+C
Sbjct: 380 LPTINFPSLRVKSTRGFRPIHQPPLC 303
>TC16100 similar to UP|DHSA_ARATH (O82663) Succinate dehydrogenase
[ubiquinone] flavoprotein subunit, mitochondrial (FP)
(Flavoprotein subunit of complex II) , partial (16%)
Length = 528
Score = 34.3 bits (77), Expect = 0.061
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 543 WKPTMVAPEICEMRNLFCCAKLVVSSALSRHESRGLHYTIDFPYLEESERLPTIIFPSSR 602
W ++ E E+ NL A + + SA +R ESRG H+ DFP ++ + +
Sbjct: 48 WNTDLI--ETIELENLLINACITMHSAEARKESRGAHFHEDFPKRDDENWMKHTVGYWEN 221
Query: 603 VKSTRSFRQLH 613
K +R +H
Sbjct: 222 EKVRLDYRPVH 254
>TC8376 homologue to UP|O65808 (O65808) Magnesium chelatase subunit ,
partial (30%)
Length = 1461
Score = 30.4 bits (67), Expect = 0.88
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 1/38 (2%)
Frame = -3
Query: 356 RDDKYVL-LDISHKPKEEILSHFPNIASFCLQYGLDIT 392
RD YVL L + H + +FP +++FCL L T
Sbjct: 220 RDSPYVLILSVPHNTSATVSGYFPPLSAFCLSTNLSTT 107
>TC17389 homologue to UP|Q9LJK5 (Q9LJK5) Dem protein, partial (12%)
Length = 528
Score = 28.1 bits (61), Expect = 4.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 534 WEEYLFQHGWKPTMVAPEICEMRNLFCCAKLVVSSALSRHESR 576
+E L+QH WK T + NLF ++ VSS S E R
Sbjct: 204 YESQLYQHVWKTTWL--------NLFLLLRIQVSSVRSSFEQR 308
>TC10886 similar to UP|Q8GSM8 (Q8GSM8) Squalene monooxygenase 1 , partial
(27%)
Length = 1135
Score = 27.3 bits (59), Expect = 7.4
Identities = 12/51 (23%), Positives = 24/51 (46%)
Frame = +1
Query: 43 VKVISSSCKKDDPTKYFDFVVIGSGIAGLRYALEVAKYGSVAVITKAESHE 93
+ S C+ + D +V+G+G+AG A + K G ++ + + E
Sbjct: 724 ITTASGECRSFNRNANIDVIVVGAGVAGAALAHTLGKDGRQVLVIERDLTE 876
>TC13991 similar to UP|Q9SW88 (Q9SW88) Amine oxidase, partial (15%)
Length = 722
Score = 27.3 bits (59), Expect = 7.4
Identities = 15/47 (31%), Positives = 24/47 (50%)
Frame = +2
Query: 563 KLVVSSALSRHESRGLHYTIDFPYLEESERLPTIIFPSSRVKSTRSF 609
K +SS HES H+ +D ++E ++ TI+ KST S+
Sbjct: 338 KPTLSSKKQNHESDAPHHPLDPLTIQEFNKVRTILSTHPLFKSTSSY 478
>TC17904 similar to UP|Q8L7V5 (Q8L7V5) AT3g52870/F8J2_40, partial (19%)
Length = 553
Score = 27.3 bits (59), Expect = 7.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 366 SHKPKEEILSHFPNIASFCLQ 386
S+KPK SHFP+I + C+Q
Sbjct: 18 SNKPKTSSPSHFPHIPTNCIQ 80
>TC14145 similar to UP|Q7XXS4 (Q7XXS4) Thiamine biosynthetic enzyme, partial
(83%)
Length = 1372
Score = 26.9 bits (58), Expect = 9.7
Identities = 11/26 (42%), Positives = 19/26 (72%)
Frame = +2
Query: 60 DFVVIGSGIAGLRYALEVAKYGSVAV 85
D V++G+G AGL A E++K S+++
Sbjct: 386 DVVIVGAGSAGLSCAYELSKDPSISI 463
>TC11727 similar to UP|Q84Y10 (Q84Y10) Carbonic anhydrase 2 , partial (48%)
Length = 584
Score = 26.9 bits (58), Expect = 9.7
Identities = 14/46 (30%), Positives = 24/46 (51%)
Frame = -3
Query: 428 VACTGLHGANRLASNSLLEALVFARRAVQPSVDQMKSSSLDLTASN 473
+ +GL+G +SNS + +L+FA S ++S D AS+
Sbjct: 267 ILSSGLNGFEPASSNSAVRSLIFAAATAPRSAFSLRSLVSDAIASS 130
>TC18124 similar to GB|BAB10858.1|10177467|AB009053 permease 1 {Arabidopsis
thaliana;} , partial (26%)
Length = 836
Score = 26.9 bits (58), Expect = 9.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 491 KILSLTKELRKELQSIMWYYVGI 513
+I + KE RKE +S++W+Y G+
Sbjct: 173 RINGVGKEERKESESVVWWYGGV 105
>TC8986 UP|Q40214 (Q40214) RAB7D, complete
Length = 1104
Score = 26.9 bits (58), Expect = 9.7
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = -1
Query: 238 FLSKVTLLASGGAGHIYPKTTNPLVATGDGIA 269
F S++T L ++PKTTN + DG+A
Sbjct: 582 FFSEITRLFPPSTSILFPKTTNGKFSGSDGLA 487
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,496,991
Number of Sequences: 28460
Number of extensions: 141966
Number of successful extensions: 642
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of query: 619
length of database: 4,897,600
effective HSP length: 96
effective length of query: 523
effective length of database: 2,165,440
effective search space: 1132525120
effective search space used: 1132525120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0400a.6