TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0391.5
         (359 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17315 similar to UP|ATP3_ARATH (Q96250) ATP synthase gamma cha...    30  0.82
BP071003                                                               30  0.82
AV425218                                                               27  5.3
NP459570 hypothetical protein [Lotus japonicus]                        26  9.0
TC19494 weakly similar to UP|Q9SND9 (Q9SND9) Anthranilate N-hydr...    26  9.0

>TC17315 similar to UP|ATP3_ARATH (Q96250) ATP synthase gamma chain,
           mitochondrial precursor  , partial (7%)
          Length = 680

 Score = 29.6 bits (65), Expect = 0.82
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 152 HELDAAIPARTMPATPPSQGTGESETSQELQS 183
           H +DA  PAR    + PS+GT   ETSQ L+S
Sbjct: 347 HCIDAPNPARQSVGSLPSRGT*VIETSQALES 442


>BP071003 
          Length = 466

 Score = 29.6 bits (65), Expect = 0.82
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -1

Query: 152 HELDAAIPARTMPATPPSQGTGESETSQELQS 183
           H +DA  PAR    + PS+GT   ETSQ L+S
Sbjct: 220 HCIDAPNPARQSVGSLPSRGT*VIETSQALES 125


>AV425218 
          Length = 419

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
 Frame = -2

Query: 49  FSIPLLSFQVISSNNVYKMSLKLIYADC-IQKLLAILALTLIIKIS 93
           F  P +  +    +N   + LKLIY DC I  +L +++  L++ IS
Sbjct: 400 FIQPFIVLKAKILHNFLPVPLKLIYYDCIIHNILQMMSYGLVLSIS 263


>NP459570 hypothetical protein [Lotus japonicus]
          Length = 972

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 19/72 (26%), Positives = 29/72 (39%), Gaps = 10/72 (13%)
 Frame = +1

Query: 99  KWIITG-LSLSTLPNTLIL---------GIPLMKAMYKDEADALLPQIIFLQSMIWYNLL 148
           +W  +G L  S L  +LI           +P  K    D +  + P +IF Q      LL
Sbjct: 175 RWFFSGHLPFSDLYESLIFLSWGFSIFYMVPRFKKQKNDLSTIIAPSVIFTQGFATSGLL 354

Query: 149 LFLHELDAAIPA 160
             +H+    +PA
Sbjct: 355 TEMHQSVILVPA 390


>TC19494 weakly similar to UP|Q9SND9 (Q9SND9) Anthranilate
           N-hydroxycinnamoyl/benzoyltransferase-like protein,
           partial (4%)
          Length = 420

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 12/27 (44%), Positives = 13/27 (47%)
 Frame = +1

Query: 30  WWKLFTPDQCSGINKFVANFSIPLLSF 56
           WW L TP QC G     +N   PL  F
Sbjct: 253 WWPL*TPLQCQGSTTSRSNL*CPLERF 333


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,023,858
Number of Sequences: 28460
Number of extensions: 79469
Number of successful extensions: 612
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of query: 359
length of database: 4,897,600
effective HSP length: 91
effective length of query: 268
effective length of database: 2,307,740
effective search space: 618474320
effective search space used: 618474320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)