BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0388a.6
(1591 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP066094 275 4e-79
BP084332 160 1e-39
AV780009 110 1e-24
BP052632 107 2e-23
BP075943 70 3e-12
AV427921 67 2e-11
BP063694 67 3e-11
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 44 3e-11
AU088980 65 1e-10
AV766665 62 7e-10
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 58 1e-08
AV766088 55 7e-08
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 54 2e-07
BP033602 52 1e-06
BP057233 50 2e-06
AV424544 50 3e-06
BP043850 46 4e-05
BP085942 40 9e-05
TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprot... 35 2e-04
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 43 4e-04
>BP066094
Length = 532
Score = 275 bits (703), Expect(3) = 4e-79
Identities = 134/149 (89%), Positives = 141/149 (93%)
Frame = +2
Query: 1207 ARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKK 1266
++ EAIRLLISFSVNHNI+LHQM+VKSAFLNGYISEEVYVHQPPG EDEK DH+FKLKK
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 1267 SLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILVVQIYVDDIIFGSANQ 1326
SLYGLKQAPRAWYERLSSFLLENE VRGKVDTTLFCKTYKDDIL+VQIYVDDIIFGSAN
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 1327 SLCKEFSKMMQAEFEMSMMGELTYFLGIQ 1355
SLCKEFS+MMQAEFEM MMGEL YFLGIQ
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 37.0 bits (84), Expect(3) = 4e-79
Identities = 16/18 (88%), Positives = 17/18 (93%)
Frame = +3
Query: 1191 YSQQEGIDYTETFAPIAR 1208
YSQQ GIDYTETFAP+AR
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
Score = 23.1 bits (48), Expect(3) = 4e-79
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1181 RNKARLVAQG 1190
RNKARLVAQG
Sbjct: 10 RNKARLVAQG 39
>BP084332
Length = 368
Score = 160 bits (406), Expect = 1e-39
Identities = 82/91 (90%), Positives = 84/91 (92%), Gaps = 1/91 (1%)
Frame = +2
Query: 1502 NLVSWESK-RQSTIALSTAEAEYISAAICSTQKLWMKHQLEDYQILESNIPIYCDNTAAI 1560
N+ WE+ QSTIALSTAEAEYISAAICSTQ LWMKHQLEDYQILESNIPIYCDNTAAI
Sbjct: 2 NVNFWEAT*GQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAI 181
Query: 1561 SLSKNPILHSRAKHIEVKYHFIRDYV*KGVL 1591
SLSKNPILHSRAKHIEVKYHFIRDYV KGVL
Sbjct: 182 SLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 274
>AV780009
Length = 529
Score = 110 bits (276), Expect = 1e-24
Identities = 56/150 (37%), Positives = 92/150 (61%), Gaps = 6/150 (4%)
Frame = -1
Query: 1448 AVKRILRYLKDTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWE 1507
A R+LRY+K GL + S KL Y D+D+AG R+S +G FLG++L+SW
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 1508 SKRQSTIALSTAEAEY--ISAAICSTQKLWMKHQLEDYQILESN----IPIYCDNTAAIS 1561
+K+Q+T++ S++EAEY ++A +C Q W+ + +Q L+ N +P++CDN +A+
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQ--WLSYL---FQFLKLNVPLPVPLFCDNQSALH 182
Query: 1562 LSKNPILHSRAKHIEVKYHFIRDYV*KGVL 1591
++ NP H R KHIE+ H +R + G++
Sbjct: 181 IAHNPTFHERTKHIELDCHVVRAKLQAGLI 92
>BP052632
Length = 489
Score = 107 bits (266), Expect = 2e-23
Identities = 50/114 (43%), Positives = 71/114 (61%)
Frame = -3
Query: 952 KTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNT 1011
KTPYELW+ +P +SYFHPFGC ++LNT D + KFD K K +LLGYS SK + +N+
Sbjct: 487 KTPYELWRGRRPTVSYFHPFGCK*FILNTNDNIGKFDNKFDKRILLGYSSNSKAYIVFNS 308
Query: 1012 DAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEDEPEE 1065
+ +EESI+V+FDD +L + F +L ++ D+ E +P E EE
Sbjct: 307 RTQVVEESINVKFDD*SIEATYRLEKDFLNLDLSDQDEEVPTNEGQPSETSHEE 146
>BP075943
Length = 547
Score = 70.1 bits (170), Expect = 3e-12
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 2/159 (1%)
Frame = -3
Query: 1314 IYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGELTYFLGIQVDQTPEGTYIHQSKYTKE 1373
+YVDD++ + + + +F + +GE YFLG+++ ++ G ++Q KY +
Sbjct: 515 LYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQ 336
Query: 1374 LLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKL--YRGMIGSLLYLTASRPDILFSV 1431
L+ + H T +G + YR ++G LLYL +RPDI F+V
Sbjct: 335 LISDSGHF-GFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDITFAV 159
Query: 1432 HLCARFQSDPRETHLTAVKRILRYLKDTTNLGLMYKKTS 1470
+ ++F S P + H + L+YL + GL Y +S
Sbjct: 158 NQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASS 42
>AV427921
Length = 284
Score = 67.0 bits (162), Expect = 2e-11
Identities = 33/79 (41%), Positives = 45/79 (56%)
Frame = +1
Query: 898 TPQQNGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRISVRPILNKTPYEL 957
TPQQNGV ERKNRT+ M R++L +G+ K F EAV + +I NR + N P E
Sbjct: 22 TPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEEA 201
Query: 958 WKNIKPNISYFHPFGCVCY 976
W +P + +F C+ Y
Sbjct: 202 WSGRQPAVDHFRISRCLAY 258
>BP063694
Length = 511
Score = 66.6 bits (161), Expect = 3e-11
Identities = 45/122 (36%), Positives = 60/122 (48%), Gaps = 3/122 (2%)
Frame = -2
Query: 740 VWHRRLGHASMRKISQLSK---LNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVS 796
+WH RLGH + I QL K L++ LP C +CQ K ++ F N
Sbjct: 360 LWHSRLGHVNFDIIKQLHKHGCLDVSSILPK-----PICCTSCQMAKSKRLVFHDNNK-R 199
Query: 797 TSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSRWTWVKFLTRKDESHAVFSTFIAQV 856
S L+L+H DL GP SI G Y +I VDD+SR+TW L RK + V F +
Sbjct: 198 ASAVLDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFM 19
Query: 857 QN 858
+N
Sbjct: 18 EN 13
>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (6%)
Length = 498
Score = 44.3 bits (103), Expect(2) = 3e-11
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2
Query: 1552 IYCDNTAAISLSKNPILHSRAKHIEVKYHF 1581
+YCDN AI L +N HSR+KHI+V+YH+
Sbjct: 173 LYCDNQGAIYLGQNSTFHSRSKHIDVRYHW 262
Score = 42.0 bits (97), Expect(2) = 3e-11
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +3
Query: 1504 VSWESKRQSTIALSTAEAEYISAAICSTQKLWMKHQLED 1542
V+W S+ Q +ALSTAEAE+I+A + LWMK+ L++
Sbjct: 27 VAWPSRLQKCVALSTAEAEFIAATEACHELLWMKNFLQN 143
>AU088980
Length = 360
Score = 64.7 bits (156), Expect = 1e-10
Identities = 30/105 (28%), Positives = 52/105 (48%)
Frame = +2
Query: 902 NGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRISVRPILNKTPYELWKNI 961
N +VERK+R + + R ++ + + K+ WT AV A Y+ N + + + PY+ N
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 962 KPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGF 1006
P + FG +CY K D ++ KC+ LG+ + G+
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGY 316
>AV766665
Length = 601
Score = 62.0 bits (149), Expect = 7e-10
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +3
Query: 1447 TAVKRILRYLKDTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSW 1506
T RI YLK + G +++K + + G+ ADY G +R ST G FL NLV+W
Sbjct: 360 TFTTRIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTW 539
Query: 1507 ESKRQSTIALSTAEAE 1522
SK+Q+ IA S+ EAE
Sbjct: 540 RSKQQNIIARSSGEAE 587
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 58.2 bits (139), Expect = 1e-08
Identities = 36/145 (24%), Positives = 70/145 (47%), Gaps = 9/145 (6%)
Frame = +2
Query: 1284 SFLLENEFVRGKVDTTLFCKTYKD-DILVVQIYVDDIIFGSANQSLCKEFSKMMQAEFEM 1342
SF++ + R D + K + D D +++ +YVDD++ N+ +E + EF+M
Sbjct: 8 SFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDM 187
Query: 1343 SMMGELTYFLGIQV--DQTPEGTYIHQSKYTKELLKKFNMLESTVAKTP------MHPTC 1394
+G LG+Q+ D+ ++ Q Y +++L++FNM + TP + +
Sbjct: 188 KDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSM 367
Query: 1395 ILEKEDASGKVCQKLYRGMIGSLLY 1419
I E ++ + Y +GSL+Y
Sbjct: 368 IPSSEAERMEMSRVPYASAVGSLMY 442
>AV766088
Length = 501
Score = 55.5 bits (132), Expect = 7e-08
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = -3
Query: 738 QWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVST 797
Q +WH RLGH S + L + N L ++ +CE+C GK ++PF + N V T
Sbjct: 313 QSLWHSRLGHPSSSALRYL-RSNKFISYELLNYSP--VCESCVFGKHVRLPFVSSNNV-T 146
Query: 798 SRPLELLHIDLF-GPVKSESIGGKRYGMIIVDDYSRWTWVKFLTRKDE 844
P ++LH DL+ PV S + G R+ ++ +DD++ + W L+ K +
Sbjct: 145 VMPFDILHSDLWTSPVLSSA--GHRFYVLFLDDFTDFLWTFPLSNKSQ 8
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 53.9 bits (128), Expect = 2e-07
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 1535 WMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGVL 1591
W+ + L+D ++ E +YCDN +A ++ NP+ H R KHIE+ H +R+ + KG++
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLI 177
>BP033602
Length = 533
Score = 51.6 bits (122), Expect = 1e-06
Identities = 30/99 (30%), Positives = 53/99 (53%)
Frame = +3
Query: 733 SVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAK 792
SV ++ +WH RLGH + + + L +L + + S CE+C K + P+ ++
Sbjct: 255 SVRDQIMLWHNRLGHPNFQYLRHLFP-DLFKNVN----CSSLECESCVLAKNQRAPYYSQ 419
Query: 793 NVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYS 831
SRP L+H D++GP K + GKR+ + +DD++
Sbjct: 420 PY-HASRPFYLIHSDVWGPSKITTQFGKRWFVTFIDDHT 533
>BP057233
Length = 473
Score = 50.4 bits (119), Expect = 2e-06
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = -2
Query: 1552 IYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV 1586
++CDN +A +L+ NP+LH+R+KHIE+ H+IRD V
Sbjct: 445 LWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQV 341
>AV424544
Length = 276
Score = 50.1 bits (118), Expect = 3e-06
Identities = 26/90 (28%), Positives = 48/90 (52%)
Frame = +3
Query: 1281 RLSSFLLENEFVRGKVDTTLFCKTYKDDILVVQIYVDDIIFGSANQSLCKEFSKMMQAEF 1340
+LSS+L +++ D +LF K V+ +YVDD+I + + + + +F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 1341 EMSMMGELTYFLGIQVDQTPEGTYIHQSKY 1370
+ +G L YFLG++V ++ G ++ Q KY
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>BP043850
Length = 515
Score = 46.2 bits (108), Expect = 4e-05
Identities = 19/52 (36%), Positives = 33/52 (62%), Gaps = 1/52 (1%)
Frame = -1
Query: 1534 LWMKHQLEDYQILESN-IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRD 1584
+W++ L + L+S P++ DNT+AI ++ NP+ H +HIEV H +R+
Sbjct: 506 IWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVRE 351
>BP085942
Length = 208
Score = 40.0 bits (92), Expect(2) = 9e-05
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 838 FLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHG 872
++ KDE+H F+ FI QVQ E ++ VRSDHG
Sbjct: 39 WILHKDETHTRFTNFITQVQKEFQTSVITVRSDHG 143
Score = 24.3 bits (51), Expect(2) = 9e-05
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +1
Query: 872 GGEFENDKFESLFDSYG 888
GGEFEN E F+S G
Sbjct: 142 GGEFENKALEEWFNSQG 192
>TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(4%)
Length = 528
Score = 35.4 bits (80), Expect(2) = 2e-04
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 1555 DNTAAISLSKNPILHSRAKHIE 1576
DN +AI L+KNP+ H R+KHIE
Sbjct: 5 DNKSAIDLAKNPVSHGRSKHIE 70
Score = 27.3 bits (59), Expect(2) = 2e-04
Identities = 11/16 (68%), Positives = 13/16 (80%)
Frame = +3
Query: 1574 HIEVKYHFIRDYV*KG 1589
+IE KYHF+RD V KG
Sbjct: 69 NIETKYHFLRDQVTKG 116
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 42.7 bits (99), Expect = 4e-04
Identities = 21/61 (34%), Positives = 35/61 (56%), Gaps = 1/61 (1%)
Frame = +3
Query: 1532 QKLWMKHQLEDYQILESN-IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KGV 1590
+ LW+ + L D +I + IYCDN +A+ L+ N + H R ++IE+ H + V G+
Sbjct: 21 EALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGI 200
Query: 1591 L 1591
L
Sbjct: 201 L 203
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.332 0.142 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,071,082
Number of Sequences: 28460
Number of extensions: 351053
Number of successful extensions: 3032
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 2973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3020
length of query: 1591
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1489
effective length of database: 1,994,680
effective search space: 2970078520
effective search space used: 2970078520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0388a.6