TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0388a.1
         (728 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP052828                                                               98  4e-21
AU251673                                                               42  3e-04
TC8081 similar to UP|AAQ84334 (AAQ84334) Zinc-finger protein, pa...    30  1.0
AW719496                                                               30  1.4
TC14415 similar to UP|O04237 (O04237) Transcription factor, part...    28  4.0
TC9194 similar to UP|Q9LYP1 (Q9LYP1) Membrane protein (AT5g07250...    27  8.8

>BP052828 
          Length = 523

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 50/115 (43%), Positives = 76/115 (65%), Gaps = 3/115 (2%)
 Frame = +2

Query: 570 LCDLGASINLMPLTMFERLNLGEVTPTMLSLQMADRSLKTPYGIVEDVMVWVDKYVFPVD 629
           + DLGA IN+MP +++  L+ G +  T L +Q+A+RS   P G+VEDV+V V++ +FP D
Sbjct: 107 MLDLGAGINVMPTSIYNILHPGPLQHTGLIVQLANRSNARPKGVVEDVLVQVNELIFPAD 286

Query: 630 FVVLDMEEDEK---IPLILGRPFLATGRAKIDVDKGHLILPVGKEKVRFSVFNPM 681
           F +LDME + K    P+ILGRPF+ T + KIDVD G + +  G    +F++ + M
Sbjct: 287 FYILDMEGETKSSRAPIILGRPFMKTAKTKIDVDNGTMSMEFGDIIAKFNIDDAM 451


>AU251673 
          Length = 413

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = +2

Query: 84  TDTIRLSLFPFSLRDTAEEWLN----SQPQGSIT-SWEDLAEKFTTRFVPRALLRKLKND 138
           +DT  + L  F L   A +W N    ++P GS   +W D + +F  RF+P+++      D
Sbjct: 8   SDTRAVELASFQLEGVARDWYNVLTRAKPVGSPPWTWADFSAEFMNRFLPQSVRDGFVRD 187

Query: 139 IMTFTQSTDENLYEAWERFKKLLRRCPQHNLTQAEQVAKFYDGLQ 183
                Q+    + E    F  L R  P + L + E+V +F  GL+
Sbjct: 188 FERLEQAEGMTVSEYSAHFTHLSRYVP-YPLLEEERVKRFVRGLK 319


>TC8081 similar to UP|AAQ84334 (AAQ84334) Zinc-finger protein, partial
           (65%)
          Length = 1222

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 415 KQENASVVATRSGRVMSELKKKTEGEKREEIVGGEVVVPI 454
           KQE A + AT  G +M+      E E  E +V   V +P+
Sbjct: 319 KQEQAKLAATSIGNIMNGSSSSIETEPTEPVVAASVDIPV 438


>AW719496 
          Length = 492

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/87 (22%), Positives = 37/87 (41%)
 Frame = +1

Query: 423 ATRSGRVMSELKKKTEGEKREEIVGGEVVVPIKVREEVDLTPETSKIPFPKALAKKSLDK 482
           A+   R+  + KKK+      EIV  E V+  K  +    TP+  +   P+ L      K
Sbjct: 154 ASTKTRMKKKKKKKSMARPHHEIVAEEEVLDNKEEDITCCTPKAKRFRIPEVLTCPPAPK 333

Query: 483 KFSKFVDVFKKLHISIPFADALEQMPI 509
           K        +++ + +P   ++ + PI
Sbjct: 334 K--------RRVTVPVPPCSSINRSPI 390


>TC14415 similar to UP|O04237 (O04237) Transcription factor, partial (83%)
          Length = 1666

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 26/116 (22%), Positives = 49/116 (41%), Gaps = 4/116 (3%)
 Frame = +2

Query: 279 DSEECTETR----PEEEVKAMGQARNDPFSNTYNPGWRNHPNFSWRQGSSGQGNGFQRQF 334
           DSE+ +E R    P    +  G  R   FSN              R   +G+G+GF+R+ 
Sbjct: 578 DSEKASERRGYGAPRGPYRGGGGGRRGGFSNGEADEEGRPRRAFERHSGTGRGSGFKREG 757

Query: 335 PSQGFQGQSLRQPQERGEGEGSGSKKSLEELVETFINRTENNYKNQEAANKNLENQ 390
             +G  G    +  +  +   + ++K+L +      +  + N   + +AN+N E +
Sbjct: 758 AGRGNWGTQSDEIAQVTDEVANETEKNLSDEKPAVEDVADGN--KESSANENEEKE 919


>TC9194 similar to UP|Q9LYP1 (Q9LYP1) Membrane protein
           (AT5g07250/T28J14_190), partial (78%)
          Length = 1467

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/44 (40%), Positives = 25/44 (55%), Gaps = 1/44 (2%)
 Frame = -1

Query: 315 PNFSWRQGSSGQGNGFQRQFPSQGFQ-GQSLRQPQERGEGEGSG 357
           PNFS R+G  G G G  R    +GF   + LR  + +G+G+G G
Sbjct: 234 PNFSSREG--GDGFGLVR----RGFNLNEFLRN*ERKGKGKGGG 121


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,705,966
Number of Sequences: 28460
Number of extensions: 134986
Number of successful extensions: 646
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of query: 728
length of database: 4,897,600
effective HSP length: 97
effective length of query: 631
effective length of database: 2,136,980
effective search space: 1348434380
effective search space used: 1348434380
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)