BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0387.8
(449 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV766612 135 2e-32
AV777278 126 6e-30
BP049680 106 7e-24
AV423696 92 1e-19
TC15369 similar to UP|Q9FFZ5 (Q9FFZ5) Gb|AAF00669.1, partial (17%) 89 1e-18
CB829368 78 3e-15
AI967462 77 8e-15
TC16575 homologue to GB|AAB61094.1|2194119|F20P5 F20P5.5 {Arabid... 73 8e-14
TC13650 similar to UP|Q9SSL4 (Q9SSL4) F3N23.34 protein, partial ... 68 4e-12
BU494295 66 1e-11
BP051681 65 2e-11
BG662185 65 3e-11
BP048416 64 4e-11
AV421063 62 2e-10
TC10134 weakly similar to UP|O80872 (O80872) At2g30010 protein (... 61 3e-10
TC13763 similar to UP|O80855 (O80855) At2g30900 protein, partial... 61 4e-10
TC20057 similar to UP|O80872 (O80872) At2g30010 protein (At2g300... 59 1e-09
CB828327 59 2e-09
CB827623 58 4e-09
TC11504 similar to UP|O82273 (O82273) At2g31110 protein, partial... 56 1e-08
>AV766612
Length = 286
Score = 135 bits (339), Expect = 2e-32
Identities = 58/94 (61%), Positives = 73/94 (76%)
Frame = +2
Query: 254 WSNADILILNTGHWWNYEKTIRGGCYFQEGTEVKLKLHVEDAYKRSMETVLNWMQSSVNP 313
W +AD+LILN GHW NYEKT++ CYFQ G EVK+ L EDA+++S +TV++W+ S VN
Sbjct: 5 WRDADVLILNAGHWXNYEKTLKLCCYFQLGVEVKINLTTEDAFRKSFQTVVDWIASEVNT 184
Query: 314 SKTQVFFRTLAPVHFRGGDWRNGGNCHSETLPDL 347
+KT V FRT APVHFRGG+W GG C+ ETLPDL
Sbjct: 185 NKTYVLFRTYAPVHFRGGNWNTGGGCNLETLPDL 286
>AV777278
Length = 582
Score = 126 bits (317), Expect = 6e-30
Identities = 69/183 (37%), Positives = 92/183 (49%), Gaps = 14/183 (7%)
Frame = +3
Query: 57 RFGFLDQPQSFPWLRL----KEQSRVEFLGENGV----------VVGGGCDLFDGEWVWD 102
R GFL F +L L Q+ EFL + GG C+ F G+WV+D
Sbjct: 54 RMGFLLPTTLFLFLSLFALFSHQTEAEFLNSFSTTNATTTISRKLAGGRCNWFRGKWVYD 233
Query: 103 ESYPLYQSKDCMFLDEGFRCSENGRRDLFYTQWRWQPKDCNMPRFNATKMLERLRNKRVV 162
SYPLY C F+D F C + GR D Y Q+RWQP C +PRFNA L + RNK+++
Sbjct: 234 RSYPLYNPSTCPFIDPQFNCQKYGRPDTLYQQYRWQPFTCPLPRFNAWDFLLKYRNKKIM 413
Query: 163 FAGDSIGRNQWESLLCMLSSGVSNKESIYEVNGNPITKHKGFLVFKFRDFNCTVEYYRAP 222
F GDS+ NQ+ SL CM+ S V N + + +K F D+ + YR P
Sbjct: 414 FVGDSLSLNQFNSLACMIHSWVPNTRTSF-------SKQNVITTITFEDYGLQLFLYRTP 572
Query: 223 FLV 225
+LV
Sbjct: 573 YLV 581
>BP049680
Length = 474
Score = 106 bits (265), Expect = 7e-24
Identities = 43/97 (44%), Positives = 63/97 (64%)
Frame = +1
Query: 92 CDLFDGEWVWDESYPLYQSKDCMFLDEGFRCSENGRRDLFYTQWRWQPKDCNMPRFNATK 151
C++++G WV+DESYP+Y C ++ F C GR D Y ++RWQP C++PRF+ K
Sbjct: 118 CNIYEGSWVYDESYPIYDYSSCPHIESQFDCLGRGRPDRKYLKYRWQPSGCDLPRFDGKK 297
Query: 152 MLERLRNKRVVFAGDSIGRNQWESLLCMLSSGVSNKE 188
L + + K+++F GDS+ NQW+SL CML S V E
Sbjct: 298 FLTKYKGKQLMFIGDSVSVNQWQSLKCMLHSAVPQIE 408
>AV423696
Length = 427
Score = 92.4 bits (228), Expect = 1e-19
Identities = 47/110 (42%), Positives = 60/110 (53%)
Frame = +1
Query: 116 LDEGFRCSENGRRDLFYTQWRWQPKDCNMPRFNATKMLERLRNKRVVFAGDSIGRNQWES 175
+ E C NGR D + WRW+P +CN+PRF L+ +RNK V F GDS+ RNQ ES
Sbjct: 16 IKESHNCITNGRPDSDFLYWRWKPNECNIPRFEPHTFLQLIRNKHVAFVGDSLARNQLES 195
Query: 176 LLCMLSSGVSNKESIYEVNGNPITKHKGFLVFKFRDFNCTVEYYRAPFLV 225
LLCMLS + K + HKG + F N T+ Y +PFLV
Sbjct: 196 LLCMLSPASTLK----------LLHHKGARWWHFPSHNATLSSYWSPFLV 315
>TC15369 similar to UP|Q9FFZ5 (Q9FFZ5) Gb|AAF00669.1, partial (17%)
Length = 1365
Score = 89.4 bits (220), Expect = 1e-18
Identities = 47/108 (43%), Positives = 59/108 (54%)
Frame = -3
Query: 329 RGGDWRNGGNCHSETLPDLGSSLVPNDNWSRFKAANAVLSSHTNASEIMKIKVLNITHMT 388
R G W GG C E P+ + + + + ++ V + K+ LNIT+++
Sbjct: 970 RNGTWNEGGECDMEKEPEKDHTKLATEPYYNTFISDVVEQMQYGS---WKVHFLNITYLS 800
Query: 389 AQRKDGHSSIYYLGRVAGPAPLHRQDCSHWCLPGVPDTWNELLYAMLL 436
RKDGH S Y R G P QDCSHWCLPGVPDTWNELLYA LL
Sbjct: 799 ELRKDGHPSKY---REPGTPPDAPQDCSHWCLPGVPDTWNELLYAQLL 665
>CB829368
Length = 541
Score = 77.8 bits (190), Expect = 3e-15
Identities = 51/136 (37%), Positives = 71/136 (51%), Gaps = 3/136 (2%)
Frame = +2
Query: 92 CDLFDGEWVWD-ESYPLYQSKDCMFLDEGFRCSENGRRDL-FYTQWRWQPKDCNMPRFNA 149
C+L+ G WV+D + PLY C F + C N R++L F W+W P+ C++PR +
Sbjct: 128 CNLYRGNWVFDPDRTPLYDDT-CPFHRNAWNCIRNQRQNLSFINSWKWVPRGCDLPRIDP 304
Query: 150 TKMLERLRNKRVVFAGDSIGRNQWESLLCMLSSGVSNKESIYEVNGNPITKHKG-FLVFK 208
+ L +RNK V F GDS+ N S LC+L V++K G K KG +
Sbjct: 305 FRFLGLMRNKNVGFVGDSLNENFLASFLCILR--VADK-------GARKWKKKGAWRGAY 457
Query: 209 FRDFNCTVEYYRAPFL 224
F FN TV Y+RA L
Sbjct: 458 FPKFNVTVGYHRAVLL 505
>AI967462
Length = 464
Score = 76.6 bits (187), Expect = 8e-15
Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Frame = +1
Query: 212 FNCTVEYYRAPFLVLQSRPPTGVSGKIRTTLKVDKMDWNSLKWSNADILILNTGHWWNYE 271
+ +++ YR P+LV R G L +D + + W++ D+LI N+ HWW +
Sbjct: 16 YGVSIQLYRTPYLVDIVREDVGA------VLALDSIQ-QANAWTDLDMLIFNSWHWWTHT 174
Query: 272 KTIRGGCYFQEGTEVKLKLHVEDAYKRSMETVLNWMQSSVNPSKTQVFFRTLAPVHFRGG 331
+G Y + G+ + + +A+ + + T W+ +V+P+KT+VFF+ ++P H++G
Sbjct: 175 GDSQGWDYIRNGSNLVKDMDRLEAFYQGLTTWARWVDLNVDPTKTKVFFQGISPTHYQGQ 354
Query: 332 DWRN-GGNCHSETLPDLGSS 350
+W +C + P GSS
Sbjct: 355 EWNQPKKSCSGQIEPLSGSS 414
>TC16575 homologue to GB|AAB61094.1|2194119|F20P5 F20P5.5 {Arabidopsis
thaliana;}, partial (8%)
Length = 868
Score = 73.2 bits (178), Expect = 8e-14
Identities = 61/213 (28%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Frame = +2
Query: 235 SGKIRTTLKVDKMDWNSLKW----SNADILILNTGHWWN-----YEKTIRGGCYFQEGTE 285
+G +T L +D KW + D +ILN GHW+ YE+ GC++
Sbjct: 17 NGPSQTGLYNLYLDEPDEKWITQIEDFDYVILNGGHWFTRSMVFYEQQKIIGCHYCLLEN 196
Query: 286 VKLKLHVEDAYKRSMETVLNWMQSSVNPSKTQVFFRTLAPVHFRGGDWRNGGNCHSETLP 345
V L + Y+R+ T + S N K F RT +P HF G W GGNC T P
Sbjct: 197 VP-DLTMYYGYRRAFRTAFKAINSLKN-FKGITFLRTFSPSHFENGIWNEGGNC-VRTKP 367
Query: 346 DLGSSLVP---NDNWSRFKAANAVLSSHTNASEIMKIKVLNITHMTAQRKDGHSSIYYLG 402
+ N + + ++ + ++ ++ + T R DGH S Y G
Sbjct: 368 FRSNETQLEGLNLEYYMIQLEEFKIAEKEARKKGLRYRLFDTMQATLLRPDGHPSKY--G 541
Query: 403 RVAGPAPLHRQDCSHWCLPGVPDTWNELLYAML 435
DC HWCLPG DTW++ L +L
Sbjct: 542 HWPNENVTLYNDCVHWCLPGPIDTWSDFLLDLL 640
>TC13650 similar to UP|Q9SSL4 (Q9SSL4) F3N23.34 protein, partial (8%)
Length = 547
Score = 67.8 bits (164), Expect = 4e-12
Identities = 42/111 (37%), Positives = 56/111 (49%), Gaps = 10/111 (9%)
Frame = +2
Query: 337 GNCHSETLPDLGSSLVPNDNWSRFKAANAVLSSHTNASEIM-----KIKVLNITHMTAQR 391
GNC+ E P N+ + + + L + + +I+ K+ VLNIT M+ R
Sbjct: 2 GNCYDEKDPI---------NFEGYWGSGSDLPTMRSVEKILSSLKSKVSVLNITQMSEYR 154
Query: 392 KDGHSSIY-YLGRVAGPAPLHR----QDCSHWCLPGVPDTWNELLYAMLLK 437
KDGH SI+ P PL DC WCLPGVPD WNELL+ +L K
Sbjct: 155 KDGHPSIFRQFWEPLRPEPLSNPPSYSDCIPWCLPGVPDVWNELLFPLL*K 307
>BU494295
Length = 403
Score = 66.2 bits (160), Expect = 1e-11
Identities = 37/122 (30%), Positives = 66/122 (53%), Gaps = 2/122 (1%)
Frame = +1
Query: 280 FQEGTEVKLKLHVEDAYKRSMETVLNWMQSSVNPSKTQVFFRTLAPVHFRGGDWR--NGG 337
F EG+ ++ AY+R ++T W+ +++P++T+VFF +++P+H + W NG
Sbjct: 40 FDEGSTEYDEIPRPIAYERVLKTWSKWVDDNIDPNRTKVFFSSMSPLHIKSEAWNNPNGI 219
Query: 338 NCHSETLPDLGSSLVPNDNWSRFKAANAVLSSHTNASEIMKIKVLNITHMTAQRKDGHSS 397
C ET P L S + R V++++ S + + LNIT ++ RKD H+S
Sbjct: 220 KCAKETTPILNMSTPLDVGTDR---RLYVIANNVTHSMNVPVNFLNITSLSELRKDAHTS 390
Query: 398 IY 399
+Y
Sbjct: 391 VY 396
>BP051681
Length = 586
Score = 65.5 bits (158), Expect = 2e-11
Identities = 41/111 (36%), Positives = 53/111 (46%)
Frame = -3
Query: 326 VHFRGGDWRNGGNCHSETLPDLGSSLVPNDNWSRFKAANAVLSSHTNASEIMKIKVLNIT 385
++FRG +W S + L S P N VL + + +L+IT
Sbjct: 521 INFRGQEWNQPKKSCSGQIEPLSGSSYPAGLPPPTTIVNKVLKNMKKP-----VYLLDIT 357
Query: 386 HMTAQRKDGHSSIYYLGRVAGPAPLHRQDCSHWCLPGVPDTWNELLYAMLL 436
++ RKD H S Y G G DCSHWCLPG+PDTWNELL A L+
Sbjct: 356 LLSQLRKDAHPSAYG-GNQGG------NDCSHWCLPGLPDTWNELLNAALM 225
>BG662185
Length = 383
Score = 64.7 bits (156), Expect = 3e-11
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Frame = +1
Query: 372 NASEIMKIKV--LNITHMTAQRKDGHSSIYYL--GRVAGPA----PLHRQDCSHWCLPGV 423
N + MK+ V +NIT ++ RKD H+S+Y + G++ P P DC HWCLPG+
Sbjct: 91 NLTHSMKVPVYFINITTLSEFRKDAHTSVYTIRQGKMLTPEQQADPATYADCIHWCLPGL 270
Query: 424 PDTWNELLYAMLL 436
PDTWNE +Y ++
Sbjct: 271 PDTWNEFIYTRII 309
>BP048416
Length = 509
Score = 64.3 bits (155), Expect = 4e-11
Identities = 43/127 (33%), Positives = 59/127 (45%), Gaps = 5/127 (3%)
Frame = -1
Query: 318 VFFRTLAPVHFRGGDWRNGGNC-HSETLPDLGSSLVPNDNWSRFKAANAVLSSHTNASEI 376
V RT +P HF+G DW GG C SE L D R V S+ A ++
Sbjct: 503 VIMRTFSPSHFKG-DWDKGGTCAKSEPYRKGEKXLEGMDAEIRRIEMEEVESAKGKAKQL 327
Query: 377 -MKIKVLNITHMTAQRKDGHSSIYY--LGRVAGPAPLHRQ-DCSHWCLPGVPDTWNELLY 432
+++++++T + R DGH Y G H Q DC HWC+PG DTWNE
Sbjct: 326 GFRLELMDVTELALLRPDGHPGAYMKPFPFANGVVQEHVQSDCVHWCVPGPIDTWNEFFL 147
Query: 433 AMLLKHE 439
++ K E
Sbjct: 146 EIMKKWE 126
>AV421063
Length = 399
Score = 62.0 bits (149), Expect = 2e-10
Identities = 29/64 (45%), Positives = 41/64 (63%)
Frame = +2
Query: 372 NASEIMKIKVLNITHMTAQRKDGHSSIYYLGRVAGPAPLHRQDCSHWCLPGVPDTWNELL 431
NA + +K+L+IT ++ R +GH S + + G QDC HWCLPGVPDTWNE+L
Sbjct: 68 NAVKGTGVKLLDITGLSQVRDEGHISRFSMTAKPGV-----QDCLHWCLPGVPDTWNEIL 232
Query: 432 YAML 435
+A +
Sbjct: 233 FAQI 244
>TC10134 weakly similar to UP|O80872 (O80872) At2g30010 protein
(At2g30010/F23F1.7), partial (12%)
Length = 555
Score = 61.2 bits (147), Expect = 3e-10
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Frame = +1
Query: 378 KIKVLNITHMTAQRKDGHSSIYY----LGRVAGPAPLHRQDCSHWCLPGVPDTWNELLYA 433
++ + ++T +TA R+DGH S+Y + + P DCSHWCLPGVPD WNE+L A
Sbjct: 136 QVYLQDVTTLTAFRRDGHPSVYRKPISIEKSQKPGTGLSSDCSHWCLPGVPDIWNEMLSA 315
Query: 434 ML 435
L
Sbjct: 316 WL 321
>TC13763 similar to UP|O80855 (O80855) At2g30900 protein, partial (13%)
Length = 538
Score = 60.8 bits (146), Expect = 4e-10
Identities = 37/95 (38%), Positives = 45/95 (46%)
Frame = +3
Query: 341 SETLPDLGSSLVPNDNWSRFKAANAVLSSHTNASEIMKIKVLNITHMTAQRKDGHSSIYY 400
S L L S P N+VL N + +L+IT ++ RKD H S Y
Sbjct: 12 SGQLEPLAGSTYPAGLPQAANILNSVLKKMNNP-----VYLLDITLLSQLRKDAHPSTYG 176
Query: 401 LGRVAGPAPLHRQDCSHWCLPGVPDTWNELLYAML 435
DCSHWCLPG+PDTWN+LLYA L
Sbjct: 177 EDHSGN-------DCSHWCLPGLPDTWNQLLYAAL 260
>TC20057 similar to UP|O80872 (O80872) At2g30010 protein
(At2g30010/F23F1.7), partial (15%)
Length = 484
Score = 59.3 bits (142), Expect = 1e-09
Identities = 33/81 (40%), Positives = 43/81 (52%), Gaps = 3/81 (3%)
Frame = +1
Query: 358 SRFKAANAVLSSHTNASEIMKIKVLNITHMTAQRKDGHSSIYYLGRVAGPAPLHR---QD 414
S+ K + V+ N + +M +IT ++A RKD H S+Y PAP D
Sbjct: 142 SQMKVVDIVIREMRNPAYLM-----DITMLSALRKDAHPSVY--SGDLSPAPRANPDYSD 300
Query: 415 CSHWCLPGVPDTWNELLYAML 435
CS WCLPG+PD WNEL Y L
Sbjct: 301 CSPWCLPGLPDAWNELFYTAL 363
>CB828327
Length = 568
Score = 58.9 bits (141), Expect = 2e-09
Identities = 39/115 (33%), Positives = 49/115 (41%), Gaps = 6/115 (5%)
Frame = +1
Query: 331 GDWRNGGNCHSETLPDLGS-SLVPNDNWSRFKAANAVLSSHTNAS---EIMKIKVLNITH 386
G W GG C S P G L ND R + + A KIK L++T
Sbjct: 4 GSWDKGGTC-SRLTPYRGKRKLGKNDAEIRRIGLEEMQKAKDKAKYFGRYFKIKALDVTK 180
Query: 387 MTAQRKDGHSSIYYLGRV--AGPAPLHRQDCSHWCLPGVPDTWNELLYAMLLKHE 439
++ R DGH Y G + DC+HWCLP DTWNE+ M+ K E
Sbjct: 181 LSLMRPDGHPGAYVSPNAFSKGVTKVVHNDCTHWCLP*PIDTWNEIFMEMVKKWE 345
>CB827623
Length = 419
Score = 57.8 bits (138), Expect = 4e-09
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = +2
Query: 92 CDLFDGEWVWDESYPLYQSKDCMFLDEGFRCSENGRRDLFYTQWRWQPKDCNMPRFNATK 151
CD+F GEWV + P Y +K C + E C + GR D + +WRW+P +P FN +
Sbjct: 233 CDIFTGEWVPNPKAPYYTNKTCWAIHEHQNCMKYGRPDSEFMKWRWKPNGXELPIFNPFQ 412
Query: 152 ML 153
L
Sbjct: 413 FL 418
>TC11504 similar to UP|O82273 (O82273) At2g31110 protein, partial (40%)
Length = 579
Score = 55.8 bits (133), Expect = 1e-08
Identities = 26/54 (48%), Positives = 33/54 (60%)
Frame = +3
Query: 382 LNITHMTAQRKDGHSSIYYLGRVAGPAPLHRQDCSHWCLPGVPDTWNELLYAML 435
L++T ++ RKD H Y + + DCSHWCLPG+PDTWNELL A L
Sbjct: 93 LDVTTLSQYRKDAHPEGY--------SGVMATDCSHWCLPGLPDTWNELLAAAL 230
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.138 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,532,038
Number of Sequences: 28460
Number of extensions: 151105
Number of successful extensions: 756
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of query: 449
length of database: 4,897,600
effective HSP length: 93
effective length of query: 356
effective length of database: 2,250,820
effective search space: 801291920
effective search space used: 801291920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0387.8