BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0383.9
(421 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG662087 218 1e-57
TC18698 75 3e-14
AV410603 54 6e-08
TC15929 similar to UP|THM4_ARATH (Q9SEU6) Thioredoxin M-type 4, ... 35 0.023
TC18092 33 0.068
TC8097 similar to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment), p... 30 0.75
AV773542 29 1.7
TC18231 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16 (Serine/threoni... 29 1.7
TC16287 homologue to BAD12186 (BAD12186) 12-oxophytodienoic acid... 29 1.7
TC18567 28 2.8
TC9233 weakly similar to GB|AAA22233.1|142501|BACAMYLAA maltogen... 27 4.8
TC19853 27 6.3
BP058111 27 6.3
TC12581 weakly similar to UP|Q7NI33 (Q7NI33) Ycf52 protein, part... 27 8.3
>BG662087
Length = 373
Score = 218 bits (556), Expect = 1e-57
Identities = 103/120 (85%), Positives = 112/120 (92%)
Frame = +1
Query: 189 NGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDED 248
+GKWRM VDYTDLNKACPK+SYPLPSIDKLVDGAS NEL+SL+DAYSGYHQIKMHPSDED
Sbjct: 13 SGKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDED 192
Query: 249 KTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSH 308
KTAFMTARVNYCYQT+PFGLKNAGATYQ LMDRVF VGRNMEVY+D+MIVKS L ++H
Sbjct: 193 KTAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>TC18698
Length = 808
Score = 74.7 bits (182), Expect = 3e-14
Identities = 37/66 (56%), Positives = 45/66 (68%)
Frame = -2
Query: 249 KTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSH 308
KT RVNY YQ MP GLKN TYQRLMD++F Q+ +N+EVYV+DMIVKS H
Sbjct: 801 KTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*FH 622
Query: 309 HEDLTK 314
DL++
Sbjct: 621 RGDLSR 604
>AV410603
Length = 162
Score = 53.5 bits (127), Expect = 6e-08
Identities = 22/48 (45%), Positives = 33/48 (67%)
Frame = +1
Query: 207 KNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMT 254
K+S+P+P++D+L+D G++ S +D SGYHQI + P D KT F T
Sbjct: 10 KDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRT 153
>TC15929 similar to UP|THM4_ARATH (Q9SEU6) Thioredoxin M-type 4, chloroplast
precursor (TRX-M4), partial (49%)
Length = 1406
Score = 35.0 bits (79), Expect = 0.023
Identities = 24/69 (34%), Positives = 33/69 (47%)
Frame = -3
Query: 36 SGCGPKKGEGVLLQRGRPVREKERLGGTLM*RGRCAGREPRHKGRGTSQQAHADRGDQGA 95
SG G + GV+ Q GR E GG *R GRE R G + H G +G+
Sbjct: 228 SGDGSELEAGVVQQPGRASAAGEGGGGGDR*RDG-DGRECRGGKEGEGLELHGGHGCRGS 52
Query: 96 EIWREDTQD 104
++WRE ++
Sbjct: 51 QLWRESEEE 25
>TC18092
Length = 519
Score = 33.5 bits (75), Expect = 0.068
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -2
Query: 194 MCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELM 228
MCV TD+NK CP+ PL SI+ LVD +S E +
Sbjct: 101 MCVC*TDINKDCPR--XPLTSINALVDYSSSYEYL 3
>TC8097 similar to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment), partial
(8%)
Length = 685
Score = 30.0 bits (66), Expect = 0.75
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 98 WREDTQDRDMLLGENLDLFAWSHKDMPGIDPNFICLA 134
W R +LL E+ F W+H + G F+CLA
Sbjct: 89 WCTRLPQRPLLLAEDHQPFEWNHNHLNGTTTIFLCLA 199
>AV773542
Length = 434
Score = 28.9 bits (63), Expect = 1.7
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 55 REKERLGGTLM*RGRCAGREPRHKGRGTSQQ 85
REK LG TLM +GR G++P+H G+ +Q
Sbjct: 125 REKAYLG-TLMVQGRSEGQKPKHGGQQDQKQ 214
>TC18231 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16 (Serine/threonine protein
phosphatase) , partial (7%)
Length = 567
Score = 28.9 bits (63), Expect = 1.7
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -3
Query: 49 QRGRPVREKERLGGTLM*RGRCAGRE--PRHKGRGTSQQAHADRGDQG 94
QR PVR+ RLGG G GR PR K R + D G QG
Sbjct: 484 QRFDPVRDNRRLGGGREDHGTARGRPRLPRRKRR--RNRVRVDTGPQG 347
>TC16287 homologue to BAD12186 (BAD12186) 12-oxophytodienoic acid
10,11-reductase, partial (23%)
Length = 534
Score = 28.9 bits (63), Expect = 1.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 202 NKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQ 239
NK CP SY SID ++ + + S I+++S +HQ
Sbjct: 132 NKVCPVFSY---SIDPILSSITSSNYKSSIESFSHWHQ 28
>TC18567
Length = 501
Score = 28.1 bits (61), Expect = 2.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 383 SRFLPHSGDKSAPFFKCLKKNA 404
SR LPH D + PF K LKK +
Sbjct: 287 SRLLPHVSDTNKPFSKTLKKQS 352
>TC9233 weakly similar to GB|AAA22233.1|142501|BACAMYLAA maltogenic
alpha-amylase (amyM) {Geobacillus stearothermophilus;} ,
partial (3%)
Length = 663
Score = 27.3 bits (59), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 243 HPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQ 276
HPS+ F+T+ N+ Y +PFG G TYQ
Sbjct: 545 HPSEFA*LYFLTSTTNFEYIALPFG---CGYTYQ 637
>TC19853
Length = 626
Score = 26.9 bits (58), Expect = 6.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 177 TWMTNVVMVKKANGKWRMC 195
+W +VM K +GKWR+C
Sbjct: 410 SWWVVMVMFKGGDGKWRVC 466
>BP058111
Length = 570
Score = 26.9 bits (58), Expect = 6.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 130 FICLALNPGIEPVTQTRRQMGDVKEKA 156
F C A+NPG+E +T ++ D+ K+
Sbjct: 447 FYCSAVNPGVE*LTSGLKEQADLASKS 527
>TC12581 weakly similar to UP|Q7NI33 (Q7NI33) Ycf52 protein, partial (49%)
Length = 701
Score = 26.6 bits (57), Expect = 8.3
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = +3
Query: 14 VRCDFNGTLGG*ISFAEWTNWESGCGPKKGEGVLLQR 50
V+CD+ G GG + +W WE GCG + G +R
Sbjct: 360 VQCDYMGRGGGPVFSRDWA-WE-GCGGEDYSGSCWER 464
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,595,514
Number of Sequences: 28460
Number of extensions: 101467
Number of successful extensions: 397
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of query: 421
length of database: 4,897,600
effective HSP length: 93
effective length of query: 328
effective length of database: 2,250,820
effective search space: 738268960
effective search space used: 738268960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0383.9