BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0383.6
(493 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP038715 63 1e-10
AV780797 32 0.31
BP047228 31 0.53
TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 30 0.90
TC16274 weakly similar to UP|Q9FYK3 (Q9FYK3) F21J9.27, partial (... 29 1.5
AV407368 29 2.0
TC20195 similar to UP|Q8IQS0 (Q8IQS0) CG32193-PA, partial (5%) 29 2.0
TC13336 similar to UP|Q8VZH0 (Q8VZH0) AT3g58640/F14P22_230, part... 29 2.0
TC19497 weakly similar to UP|Q8LA02 (Q8LA02) Contains similarity... 28 4.5
BP055954 27 5.8
AV770176 27 5.8
AV410532 27 7.6
TC15244 similar to UP|O49235 (O49235) 2,4-D inducible glutathion... 27 7.6
TC9316 similar to UP|Q94F86 (Q94F86) Early light inducible prote... 27 9.9
BP081200 27 9.9
TC18947 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/d... 27 9.9
>BP038715
Length = 530
Score = 62.8 bits (151), Expect = 1e-10
Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = +2
Query: 422 KRGRPRGSKAKPKQQVIDL--PISDDDFEWEDASARARHTWKVAKQLGVVYKGREDEIVQ 479
+RGRP+GSK KPK IDL P+ +D + RA+ TW + KQLG+ +G E +++
Sbjct: 170 QRGRPKGSKNKPKPLPIDLLEPVMGED----RVTTRAQRTWLIGKQLGLKPRGSEALMLR 337
Query: 480 RLEKQLRENHPNL 492
LE Q+R+NHP+L
Sbjct: 338 GLEAQIRQNHPHL 376
>AV780797
Length = 611
Score = 31.6 bits (70), Expect = 0.31
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = +3
Query: 61 VSTSSSEHEGDEPVDEGQRDDGVVVTPRVTEKQTSESIDDM 101
+ TSS +GD +E QR D VV+T +T E++ D+
Sbjct: 423 IDTSSRPEDGDRVAEEWQRADTVVLTYACDRPETLENLSDV 545
>BP047228
Length = 467
Score = 30.8 bits (68), Expect = 0.53
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = -1
Query: 452 ASARARHTWKVAKQLGVVYKGREDEIVQRLEKQLRENHPNLH 493
A RA+ + +A+ +GVV G E++ +Q L L HP L+
Sbjct: 392 ALTRAQRIFLIAQPVGVVPIGSEEDSIQSLADHLVATHPRLY 267
>TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (93%)
Length = 682
Score = 30.0 bits (66), Expect = 0.90
Identities = 20/70 (28%), Positives = 33/70 (46%), Gaps = 8/70 (11%)
Frame = -2
Query: 45 YLASGMSSRNHKAMSEVSTS--------SSEHEGDEPVDEGQRDDGVVVTPRVTEKQTSE 96
Y+ +SSR K + T S +HE D +D D G++V + SE
Sbjct: 537 YITLFLSSRTGKLGDRLGTLRDSMLGQFSGQHEPDRGLDLPGSDGGLLVVASEPGRFLSE 358
Query: 97 SIDDMLEETV 106
++D+++ETV
Sbjct: 357 LLEDVVDETV 328
>TC16274 weakly similar to UP|Q9FYK3 (Q9FYK3) F21J9.27, partial (14%)
Length = 570
Score = 29.3 bits (64), Expect = 1.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 187 LKGTQKKETEETNFEEIKEQFSVEGGQVGKVWFDNSDKA 225
LKG +K ++ EE KE+ +V GG+ K+W + D +
Sbjct: 438 LKGEKKSIRKKQKREENKEKDNVGGGEGNKIWNEIHDSS 322
>AV407368
Length = 373
Score = 28.9 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +2
Query: 399 RRGRKKGGLGALRGRKTEAK-PKPKR--GRPRGSKAKPKQQVIDLPISDDDFEWEDASAR 455
R G +GGL K K P KR + ++ P + LP+ ++ FEW+ A
Sbjct: 44 RDGSGRGGLARAMADKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRG 223
Query: 456 ARHTWKVAKQLGVVYKGR 473
R T + G +Y GR
Sbjct: 224 PRDT----EFEGGIYHGR 265
>TC20195 similar to UP|Q8IQS0 (Q8IQS0) CG32193-PA, partial (5%)
Length = 591
Score = 28.9 bits (63), Expect = 2.0
Identities = 12/27 (44%), Positives = 20/27 (73%)
Frame = +1
Query: 467 GVVYKGREDEIVQRLEKQLRENHPNLH 493
G+ +G E +++ LE Q+RENHP+L+
Sbjct: 1 GLKPRGSEALMLRXLEAQIRENHPHLN 81
>TC13336 similar to UP|Q8VZH0 (Q8VZH0) AT3g58640/F14P22_230, partial (7%)
Length = 584
Score = 28.9 bits (63), Expect = 2.0
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +3
Query: 336 KGVAASPLNTLSGWDKKSDGSIENNLVVGVQACIG 370
K +ASP NT+ G ++K + +++L++ + +C+G
Sbjct: 339 KNPSASPSNTVIGVERKKERDDDDDLILILTSCVG 443
>TC19497 weakly similar to UP|Q8LA02 (Q8LA02) Contains similarity to
RNA-binding protein from Arabidopsis thaliana gi|2129727
and contains RNA recognition PF|00076 domain, partial
(11%)
Length = 436
Score = 27.7 bits (60), Expect = 4.5
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 389 DTEILDKVKQRRGRKKGGLGALRGR-KTEAKPKPKRGRPRGSKAKPKQQVIDLPISDDDF 447
D + D ++R R+ GGLG RGR + + + RGR G + + Q D+ + +
Sbjct: 71 DIDGSDTGRERTPREGGGLGRGRGRGRGRGRGRGFRGRD-GEERSGRSQDTDISHAGGLY 247
Query: 448 EWEDASARARHTWKVAKQLG 467
+DA K+AK+LG
Sbjct: 248 LGDDADGE-----KLAKKLG 292
>BP055954
Length = 518
Score = 27.3 bits (59), Expect = 5.8
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
Frame = +3
Query: 398 QRRGRKKGGLGALRGRKTEAKPKPKRGRPRGSKAKPKQ-QVIDLPI 442
+RRGR++GG A G E RG +P++ V+DLP+
Sbjct: 180 RRRGRRRGGGAARVGSGPERDQLVPEVPVRGGGTRPRRNHVLDLPL 317
>AV770176
Length = 188
Score = 27.3 bits (59), Expect = 5.8
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 249 VSCNDNPLRWGMNLRWPNNTWVMPSLLTGAGSSRRLIYDQNYGKTL 294
VS N +W W N+TW M + L G +R+ Y K +
Sbjct: 28 VSDTGNVSKW-----WENSTWKMTTHLVALGKGQRMGYSSGEPKVI 150
>AV410532
Length = 418
Score = 26.9 bits (58), Expect = 7.6
Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 6/51 (11%)
Frame = +1
Query: 402 RKKGGLGALRGRKTEAKPKPKRGRPRGSKAKPKQQV------IDLPISDDD 446
++K + A+ E K K+ +K KPK + IDLP SDDD
Sbjct: 235 KEKISVSAMLASMDEKPDKAKKVASSSNKPKPKPKASTYTDGIDLPPSDDD 387
>TC15244 similar to UP|O49235 (O49235) 2,4-D inducible glutathione
S-transferase , complete
Length = 1309
Score = 26.9 bits (58), Expect = 7.6
Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 5/32 (15%)
Frame = -2
Query: 230 QQWKVNCGVRAQSVLNVGSV-----SCNDNPL 256
QQW +CG +S GS+ SC+ NPL
Sbjct: 240 QQWVFHCG*ELESSCEQGSIGGVEDSCSSNPL 145
>TC9316 similar to UP|Q94F86 (Q94F86) Early light inducible protein,
partial (84%)
Length = 831
Score = 26.6 bits (57), Expect = 9.9
Identities = 10/28 (35%), Positives = 20/28 (70%)
Frame = -2
Query: 141 GIEEVECVAAVNECKELAVVNVANGLSE 168
G+E ++C+AA++E ++LA + +SE
Sbjct: 143 GLEMIDCIAAIDELEKLAKLTQEQVVSE 60
>BP081200
Length = 427
Score = 26.6 bits (57), Expect = 9.9
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 423 RGRPRGSKAKPKQQVI 438
RGRP GSK KPK VI
Sbjct: 166 RGRPPGSKNKPKPPVI 213
>TC18947 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/dl4935c
{Arabidopsis thaliana;}, partial (25%)
Length = 435
Score = 26.6 bits (57), Expect = 9.9
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3
Query: 423 RGRPRGSKAKPKQQVI 438
RGRP GSK KPK VI
Sbjct: 246 RGRPPGSKNKPKPPVI 293
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,639,229
Number of Sequences: 28460
Number of extensions: 99708
Number of successful extensions: 394
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of query: 493
length of database: 4,897,600
effective HSP length: 94
effective length of query: 399
effective length of database: 2,222,360
effective search space: 886721640
effective search space used: 886721640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0383.6