TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0382.4
         (684 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10985                                                                29  2.9
TC18307 similar to UP|Q7XYK9 (Q7XYK9) Plastid protein SufE (Frag...    28  6.4
BP056965                                                               27  8.4

>TC10985 
          Length = 736

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 130 FTQLYIYDTHNEFSNRMKIFRYFL-NYLQIYEQNLYLDVMVADAKFLLSFFYISSSS 185
           + +LY+  T+   + R+ I  YFL +++  Y  NL   + +      LSFFY  S S
Sbjct: 703 YMKLYLVSTNKAITIRLNIHAYFLFHFISTYFLNLVSLIHLLHHISYLSFFYSLSIS 533


>TC18307 similar to UP|Q7XYK9 (Q7XYK9) Plastid protein SufE (Fragment),
           partial (9%)
          Length = 773

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 182 SSSSRKSPLDPSLMKDLTALIDKDNELAKMFQRVKD 217
           +SSS  SP  P+ ++ +  L  K  E+ K+FQ V++
Sbjct: 190 ASSSSPSPSSPTSLQPIEELPPKLQEIVKLFQSVQE 297


>BP056965 
          Length = 371

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 277 RLPERKKKPFLHSSSISF 294
           R P++KKKP  HS S+SF
Sbjct: 178 RAPKKKKKPSSHSFSVSF 231


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.345    0.151    0.500 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,496,148
Number of Sequences: 28460
Number of extensions: 180605
Number of successful extensions: 1643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of query: 684
length of database: 4,897,600
effective HSP length: 96
effective length of query: 588
effective length of database: 2,165,440
effective search space: 1273278720
effective search space used: 1273278720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 58 (26.9 bits)