BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0380.7
(155 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12256 weakly similar to UP|Q9ASZ6 (Q9ASZ6) AT4g35320/F23E12_12... 252 2e-68
TC9650 similar to UP|O49485 (O49485) Phosphoglycerate dehydrogen... 31 0.083
TC16964 similar to UP|Q9SV20 (Q9SV20) Beta-COP-like protein, par... 31 0.11
TC12476 similar to GB|AAC72109.1|3850569|F15K9 ESTs gb|T21276, g... 30 0.18
CN825556 28 0.20
AV415980 28 0.54
TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcripti... 25 0.66
CB829288 28 0.92
TC8581 similar to UP|Q94II4 (Q94II4) NAM-like protein, partial (9%) 27 1.2
BP038802 27 1.6
TC12074 27 2.0
TC20181 27 2.0
TC8587 similar to UP|Q84MD8 (Q84MD8) At4g21470, partial (97%) 27 2.0
AI967551 27 2.0
BP072692 26 2.7
TC11734 similar to UP|WR49_ARATH (Q9FHR7) Probable WRKY transcri... 26 2.7
BP030058 26 2.7
AV776174 26 2.7
BP048399 26 2.7
TC18628 weakly similar to PIR|T09527|T09527 glycine-rich protein... 26 3.5
>TC12256 weakly similar to UP|Q9ASZ6 (Q9ASZ6) AT4g35320/F23E12_120, partial
(33%)
Length = 640
Score = 252 bits (643), Expect = 2e-68
Identities = 120/126 (95%), Positives = 121/126 (95%)
Frame = +1
Query: 30 RSVDSSEHGLRKRLSSFNTTPAAASASASAVWSSFPRSKSLSSMGDYAGTSIKNWWDWTW 89
RSVDSSEHGLR RL+S NTTPAAASASASAVWSSFPRSKSLSSMGDYAGTSI NWWDWTW
Sbjct: 1 RSVDSSEHGLRLRLASLNTTPAAASASASAVWSSFPRSKSLSSMGDYAGTSI*NWWDWTW 180
Query: 90 AWILSRKPIFARDLELNDQETKLLGGSHNRGTWRHVFYKLRSEIRRFIPPTNSHHHLPRT 149
AWILSRKPIFARDLELNDQETKLLGGSH RGTWRHVFYKLRSEIRRFIPPTNSHHHLPRT
Sbjct: 181 AWILSRKPIFARDLELNDQETKLLGGSHYRGTWRHVFYKLRSEIRRFIPPTNSHHHLPRT 360
Query: 150 TPQADS 155
TP ADS
Sbjct: 361 TPPADS 378
>TC9650 similar to UP|O49485 (O49485) Phosphoglycerate dehydrogenase-like
protein , partial (47%)
Length = 1041
Score = 31.2 bits (69), Expect = 0.083
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 14 TIPTTSNNKQLPVSHSRSVDSSEHGLRKRLS-SFNTTPAAASASASAVWSSFPRSKS 69
T+P S++ P S SS KR+S S T+P + + + S + SS PRS S
Sbjct: 143 TVPAPSSSSSPPPSTPNPPSSSPRSSAKRVSNSSRTSPTSTAPTISPLRSSAPRSPS 313
>TC16964 similar to UP|Q9SV20 (Q9SV20) Beta-COP-like protein, partial (15%)
Length = 593
Score = 30.8 bits (68), Expect = 0.11
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +2
Query: 19 SNNKQLPVSHSRSVDSSEHGLRKRLSSFNTTPAAASASASAVWSSFPRSKSLSSM 73
S K +P + SS + SS T+ +A S SAS+ S+ PRS SLSS+
Sbjct: 407 SLTKPIPAARFSRR*SSSARISATTSSTLTSTSAVSPSASSAVSTNPRSSSLSSL 571
>TC12476 similar to GB|AAC72109.1|3850569|F15K9 ESTs gb|T21276, gb|T45403,
and gb|AA586113 come from this gene. {Arabidopsis
thaliana;}, partial (7%)
Length = 791
Score = 30.0 bits (66), Expect = 0.18
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = -3
Query: 13 FTIPTTSNNKQLPVSHSRSVDSSEHGLRKRLSSFNTTPAAASASASAVWSSFPRSKSLS 71
FT SN L + + ++D++ L +S N +P + S SA+ +SSFP SKSL+
Sbjct: 219 FTSFLISNFSPLSLPVATTLDTTF*SL---FTSSNLSPPSVSDSAATPFSSFPTSKSLT 52
>CN825556
Length = 655
Score = 27.7 bits (60), Expect(2) = 0.20
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -2
Query: 84 WWDWTWAWILSRKPIFARDLE 104
WW W W W RK A++ +
Sbjct: 450 WWHWLWRWQHRRKSTHAKNAQ 388
Score = 20.8 bits (42), Expect(2) = 0.20
Identities = 9/25 (36%), Positives = 10/25 (40%)
Frame = -3
Query: 67 SKSLSSMGDYAGTSIKNWWDWTWAW 91
S + S G AG W W W W
Sbjct: 599 SGASSG*GRDAGGGTGWGWGWGWGW 525
>AV415980
Length = 127
Score = 28.5 bits (62), Expect = 0.54
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 123 RHVFYKLRSEIRRFIPPTNSHHHLPRTTPQ 152
R +FY S+ RF P + HH+ PRT Q
Sbjct: 16 RFLFYFFLSKRHRFHPHSRCHHNNPRTRTQ 105
>TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (37%)
Length = 1130
Score = 25.4 bits (54), Expect(2) = 0.66
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -2
Query: 62 SSFPRS-KSLSSMGDYAGTSIKNWWDWTWAW 91
SS RS KSLS G W W WAW
Sbjct: 883 SSIHRSMKSLSHSASPPGRGSAWAWIWAWAW 791
Score = 21.2 bits (43), Expect(2) = 0.66
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 89 WAWILSRKPIFARDLELNDQETKLLGGSHNRGTWR 123
W + ++KP+ RDL+L + GG G R
Sbjct: 788 WLIVEAQKPLNVRDLQLQVRLILEPGGDDGCGAVR 684
>CB829288
Length = 451
Score = 27.7 bits (60), Expect = 0.92
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +1
Query: 83 NWWDWTWAW 91
+WWDW W W
Sbjct: 196 DWWDWEWEW 222
>TC8581 similar to UP|Q94II4 (Q94II4) NAM-like protein, partial (9%)
Length = 1158
Score = 27.3 bits (59), Expect = 1.2
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 68 KSLSSMGDYAGTSIKNWWDWTWAWI 92
KS S G G WW W W WI
Sbjct: 299 KSRGSAGPEPGNDELWWWWWWWWWI 373
>BP038802
Length = 533
Score = 26.9 bits (58), Expect = 1.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 81 IKNWWDWTWAWILSRKPIF 99
+ WW W WAWI S +F
Sbjct: 159 LARWW-WCWAWITSHTILF 212
>TC12074
Length = 490
Score = 26.6 bits (57), Expect = 2.0
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = -3
Query: 138 PPTNSHHHLPRTTPQADS 155
P ++SHHHLP TP +S
Sbjct: 221 P*SSSHHHLPSLTPTLNS 168
>TC20181
Length = 504
Score = 26.6 bits (57), Expect = 2.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +1
Query: 115 GSHNRGTWRHVFYKLRS-----EIRRFIPPTNSHHHLPRTTPQAD 154
G H+RGT + F ++ E+R P ++SH H R D
Sbjct: 313 GLHDRGTAQGFFLSFQAIIRSTEVRSMTPSSHSHSHFFRVIASED 447
>TC8587 similar to UP|Q84MD8 (Q84MD8) At4g21470, partial (97%)
Length = 1519
Score = 26.6 bits (57), Expect = 2.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 126 FYKLRSEIRRFIPPTNSHHHLPRTTP 151
FY L + +IP TN+HHH T+P
Sbjct: 1024 FYSLFFVLEIWIP-TNAHHHFKNTSP 950
>AI967551
Length = 466
Score = 26.6 bits (57), Expect = 2.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 33 DSSEHGLRKRLSSFNTTPAAASASASAVWSSFPRSKSLS 71
DS+ HG+R L +F++ AAA A A ++ S +L+
Sbjct: 335 DSTRHGIRVWLGTFDSAEAAALAYDQAAFAMRGSSATLN 451
>BP072692
Length = 422
Score = 26.2 bits (56), Expect = 2.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 28 HSRSVDSSEHGLRKRLSSFNTTPAAASASASAVWSSFPRSKSLSS 72
HS+ +S+ G R SS +T + + + WS P S + SS
Sbjct: 52 HSKLTPNSDFGARPFSSSSSTCMPSMTHQTPSPWSPIPPSAAASS 186
>TC11734 similar to UP|WR49_ARATH (Q9FHR7) Probable WRKY transcription
factor 49 (WRKY DNA-binding protein 49), partial (28%)
Length = 1009
Score = 26.2 bits (56), Expect = 2.7
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Frame = -1
Query: 71 SSMGDYAGTSIKNW-------WDWTWAW 91
SS+GD T W W W WAW
Sbjct: 676 SSVGDVRPTEALAWASLTMKSWAWAWAW 593
>BP030058
Length = 455
Score = 26.2 bits (56), Expect = 2.7
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +3
Query: 84 WWDWTWAW 91
WW W WAW
Sbjct: 342 WWRWRWAW 365
>AV776174
Length = 330
Score = 26.2 bits (56), Expect = 2.7
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = +1
Query: 15 IPTTSNNKQLPVSHSRSVDSSEHGLRKRL 43
+PTT + Q+P S R+VD S + L RL
Sbjct: 76 LPTTFTSSQVPQSRFRTVDVSRYLLLLRL 162
>BP048399
Length = 481
Score = 26.2 bits (56), Expect = 2.7
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = -2
Query: 39 LRKRLSSFNTTPAAASASASAVWSSFPRSKSLSSMGDYAGTS 80
LRK+ F+T+ S++W + P S++L ++G G S
Sbjct: 333 LRKKGFPFHTSSTLHITVKSSLWMN*PMSQTLQNIGHMNGAS 208
>TC18628 weakly similar to PIR|T09527|T09527 glycine-rich protein 1 -
chickpea {Cicer arietinum;} , partial (32%)
Length = 424
Score = 25.8 bits (55), Expect = 3.5
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 84 WWDWTWAWILSRK 96
WW W+W+W R+
Sbjct: 5 WWWWSWSWWTRRR 43
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.127 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,546,504
Number of Sequences: 28460
Number of extensions: 55413
Number of successful extensions: 869
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of query: 155
length of database: 4,897,600
effective HSP length: 83
effective length of query: 72
effective length of database: 2,535,420
effective search space: 182550240
effective search space used: 182550240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0380.7