TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0380.6
         (347 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC20270 similar to UP|O65494 (O65494) UDP-galactose transporter ...   344  1e-95
TC14001 similar to UP|Q8LGE9 (Q8LGE9) CMP-sialic acid transporte...   115  1e-26
TC10532 similar to UP|Q8LGE9 (Q8LGE9) CMP-sialic acid transporte...    91  3e-19
TC10663 similar to UP|Q8VYH1 (Q8VYH1) AT5g65000/MXK3_23, partial...    45  2e-05
AW720506                                                               33  0.071
TC8121 UP|Q9LKJ5 (Q9LKJ5) Multifunctional transport intrinsic me...    28  2.3
TC12879                                                                27  3.9
TC17725 homologue to UP|Q8LLR2 (Q8LLR2) MADS-box protein 2, part...    27  6.6
AU089094                                                               27  6.6

>TC20270 similar to UP|O65494 (O65494) UDP-galactose transporter - like
           protein (UDP-galactose transporter-like protein),
           partial (98%)
          Length = 768

 Score =  344 bits (883), Expect = 1e-95
 Identities = 174/175 (99%), Positives = 174/175 (99%)
 Frame = +1

Query: 173 QWAAFILLTAGCTTAQLNSNSDHVLQTPFQGWVMAIAMALLSGFAGVYTEAIIKKRPSRN 232
           QWAAFILLTAGCTTAQLNSNSDHVLQTPFQGWVMAIAMALLSGFAGVYTEAIIKKRPSRN
Sbjct: 1   QWAAFILLTAGCTTAQLNSNSDHVLQTPFQGWVMAIAMALLSGFAGVYTEAIIKKRPSRN 180

Query: 233 INVQNFWLYVFGMGFNAVAILVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMVMK 292
           INVQNFWLYVFGMGFNAVAILVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMVMK
Sbjct: 181 INVQNFWLYVFGMGFNAVAILVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMVMK 360

Query: 293 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTIVVSVAIYLHSAGKMQR 347
           YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTIVVSVA YLHSAGKMQR
Sbjct: 361 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTIVVSVAFYLHSAGKMQR 525


>TC14001 similar to UP|Q8LGE9 (Q8LGE9) CMP-sialic acid transporter-like
           protein, partial (43%)
          Length = 497

 Score =  115 bits (287), Expect = 1e-26
 Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
 Frame = +3

Query: 41  QWKRKSMVTFA--LTILTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRI 98
           +WK+    + A  LT+LTSSQ IL   S+  GKY+Y   T  F+ E  K A+S + L   
Sbjct: 12  KWKKMQWYSVAALLTVLTSSQGILTTLSQTNGKYDYDYATIPFLAEVFKLAVSCLLL--- 182

Query: 99  WNKEGVTDDNRLTTTLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTG 158
           W +   +   ++TT    V +YPIP+ +YL+ N +Q+    YVD   YQI+ N  I++TG
Sbjct: 183 WRECKSSPLPKMTTDWKTVALYPIPSVIYLIHNNVQFATLMYVDTSTYQIMGNLKIVTTG 362

Query: 159 VLYRIILKKRLSEIQWAAFILLTAGCTTAQL 189
           +L+R+ L +RLS +QW A  LL  G TT+Q+
Sbjct: 363 ILFRLFLGRRLSNLQWMAVGLLAIGTTTSQV 455


>TC10532 similar to UP|Q8LGE9 (Q8LGE9) CMP-sialic acid transporter-like
           protein, partial (34%)
          Length = 750

 Score = 90.9 bits (224), Expect = 3e-19
 Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
 Frame = +3

Query: 243 FGMGFNAVAILVQDFDAVMNKG-----FFHGYSFITVLMIFNHALSGIAVSMVMKYADNI 297
           FG  FN   ++V DF      G      F+GY+  T L++ N   +G+ VS +MKYADNI
Sbjct: 63  FGTIFNLARLVVDDFRGGFENGPWWQRIFNGYTITTWLVVLNLGSTGLLVSWLMKYADNI 242

Query: 298 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTIVVSVAIYLHSA 342
           VKVYSTS+AMLLT V+S+FLF F  +L  FLG ++  ++++++ A
Sbjct: 243 VKVYSTSMAMLLTMVLSIFLFDFKPTLQLFLGIVICMMSLHMYFA 377


>TC10663 similar to UP|Q8VYH1 (Q8VYH1) AT5g65000/MXK3_23, partial (27%)
          Length = 584

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
 Frame = +1

Query: 263 KGFFHGYSFITVLMIFNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHL 322
           +GF +G++ +T++ + +HAL+GI V +V +YA  + K +    A+L+TA++     G   
Sbjct: 10  RGFCYGWTPLTLVPVISHALAGILVGLVTRYAGGVRKGFVLVSALLVTALLPFLFEGKPP 189

Query: 323 SLAFF--LGTIVVSVAIY 338
           SL     L  +V S+++Y
Sbjct: 190 SLYCLAALPLVVSSISVY 243


>AW720506 
          Length = 572

 Score = 33.1 bits (74), Expect = 0.071
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 19  SVAVNNTVSDGETKVDSHRTQVQWKRKSMVTFALT----ILTSSQAILIVWSKRAGKYEY 74
           S  V+ T        D H++++  K++ ++ F L     IL   Q IL+  SK  GK+ +
Sbjct: 287 SKLVSPTTKSISRAYDRHKSRITSKQR-VLNFLLVGGDCILVGLQPILVYMSKVDGKFNF 463

Query: 75  SVTTANFMVETLK 87
           S  + NF+ E  K
Sbjct: 464 SPISVNFLTEITK 502


>TC8121 UP|Q9LKJ5 (Q9LKJ5) Multifunctional transport intrinsic membrane
           protein 2, complete
          Length = 1213

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 15/49 (30%), Positives = 28/49 (56%)
 Frame = +2

Query: 165 LKKRLSEIQWAAFILLTAGCTTAQLNSNSDHVLQTPFQGWVMAIAMALL 213
           L+K ++E+    F +  AGC +  +N N+D+V+  P    V  +A+ +L
Sbjct: 209 LQKVIAELVGTYFFIF-AGCASIVVNKNNDNVVTLPGIALVWGLAVMVL 352


>TC12879 
          Length = 558

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
 Frame = +3

Query: 140 YVDAPGYQILKNFNIISTGV--------LYRIILKKRLSEIQWAAFILLTAG 183
           YV   G Q  K   +IS  V        L R ++++ LSE  W  F+L+  G
Sbjct: 6   YVQVNGRQYYKFVKVISGSVAKKNQTLPLPRSVVREYLSEHNWGRFVLMKEG 161


>TC17725 homologue to UP|Q8LLR2 (Q8LLR2) MADS-box protein 2, partial (45%)
          Length = 970

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 16/52 (30%), Positives = 30/52 (56%), Gaps = 4/52 (7%)
 Frame = +3

Query: 50  FALTILTSSQAILIVWSKRAGKYEYSVTTANFMVETL----KCAISLVALGR 97
           + L++L  ++  LIV+S R   YE+   +++ MV+TL    KC+   V + +
Sbjct: 372 YELSVLCDAEVALIVFSTRGKLYEF--CSSSSMVKTLERYQKCSYGAVEVNK 521


>AU089094 
          Length = 639

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 20/58 (34%), Positives = 31/58 (52%)
 Frame = -2

Query: 37  RTQVQWKRKSMVTFALTILTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCAISLVA 94
           RT+V  + +  +      L SS+AILI WS     + YSV + + M++ L   +SL A
Sbjct: 311 RTRVVERSRLCMADCKRSLQSSRAILIPWS----LFPYSVVSRSLMLKAL-MTLSLAA 153


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,236,884
Number of Sequences: 28460
Number of extensions: 62639
Number of successful extensions: 428
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of query: 347
length of database: 4,897,600
effective HSP length: 91
effective length of query: 256
effective length of database: 2,307,740
effective search space: 590781440
effective search space used: 590781440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)