BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0378b.9
(768 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 137 6e-33
BP066094 119 2e-28
BP075943 91 9e-19
AU088980 84 6e-17
AV424544 68 6e-12
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 67 1e-11
AV769206 66 2e-11
BP084332 66 2e-11
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 63 2e-10
BP057233 61 6e-10
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 61 8e-10
BP043850 60 1e-09
AV766665 57 1e-08
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 56 2e-08
TC18909 54 3e-08
AV767042 54 1e-07
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 35 3e-06
BP084259 45 3e-05
AV427921 40 0.002
TC9030 similar to GB|AAM63479.1|21554372|AY086477 phospholipase-... 37 0.012
>AV780009
Length = 529
Score = 137 bits (345), Expect = 6e-33
Identities = 64/158 (40%), Positives = 95/158 (59%)
Frame = -1
Query: 590 QAVKRILRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGGNLVSW 649
QA R+LRY+ G GL+ S + + A++DSDW PD RRS +G I++G +L+SW
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISW 350
Query: 650 AAKKQTVVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVAN 709
KKQT V+RSS+EAEYR+LA + E+ WL L L++ ++CDN S +H+ N
Sbjct: 349 RTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHN 170
Query: 710 PILHTKTKHFALDLHFVRERVADKQVTVVNIPAPSQVS 747
P H +TKH LD H VR ++ + ++ I Q++
Sbjct: 169 PTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLA 56
>BP066094
Length = 532
Score = 119 bits (299), Expect(2) = 2e-28
Identities = 64/149 (42%), Positives = 91/149 (60%), Gaps = 2/149 (1%)
Frame = +2
Query: 351 KPTTIRTVLSLALMHQWPIRQFDFNNAFLNGELVEEVFMQQPPGFS--KGSSHLVCKLKK 408
K IR ++S ++ H + Q + +AFLNG + EEV++ QPPG K S H+ KLKK
Sbjct: 89 KTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIF-KLKK 265
Query: 409 ALYGLKQAPRAWFDKLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSS 468
+LYGLKQAPRAW+++LSS L K DT+LFCK K + L + +YVDDII ++
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 469 TAIFSLIADLNAVFPLKDLGSLHYFLGIE 497
+ + A F ++ +G L YFLGI+
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 23.9 bits (50), Expect(2) = 2e-28
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 334 FHQTEGYDYNETFSPVVK 351
+ Q G DY ETF+PV +
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>BP075943
Length = 547
Score = 90.5 bits (223), Expect = 9e-19
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 1/162 (0%)
Frame = -3
Query: 454 ILVYVDDIIITGSSSTAIFSLIADLNAVFPLKDLGSLHYFLGIEATHTKDGGLILSQTKY 513
+L+YVDD+++ G+ I + + L+ F +KDLG YFLG+E + G ++L+Q KY
Sbjct: 521 LLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSG-IVLNQRKY 345
Query: 514 INDLLIKAKMDSINPS-PTPMTSGLKLSANSGALFPKPLLYRSVVGALHYVTITRPEIAF 572
L+ + P + T+ L N+G YR +VG L Y+ TRP+I F
Sbjct: 344 ALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDITF 165
Query: 573 PLNKVCQFMHSPLEPHWQAVKRILRYLHGTATHGLYLRRPSS 614
+N++ QF+ +P + H Q + L+YL G+ GL+ SS
Sbjct: 164 AVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASSS 39
>AU088980
Length = 360
Score = 84.3 bits (207), Expect = 6e-17
Identities = 46/105 (43%), Positives = 55/105 (51%)
Frame = +2
Query: 21 NGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLINQLPIPTLDLSTPLQKLYDK 80
N VE KHRHI AL+ H+++P W A + AAYLIN LP P L P Q L +
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 81 KPDYSFLKCFGCLCYPHTRPYNTHKLAFRSAPCTFLGYSPMHKGY 125
P LK FG LCY T +N KL R+ C FLG+ GY
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGY 316
>AV424544
Length = 276
Score = 67.8 bits (164), Expect = 6e-12
Identities = 41/91 (45%), Positives = 53/91 (58%)
Frame = +3
Query: 423 KLSSTLARFGFQAAKCDTSLFCKFTKSETLYILVYVDDIIITGSSSTAIFSLIADLNAVF 482
KLSS L G+ + D SLF KF + ILVYVDD+I+ G+ I + L+ F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 483 PLKDLGSLHYFLGIEATHTKDGGLILSQTKY 513
+KDLG+L YFLG+E + GL LSQ KY
Sbjct: 186 RIKDLGTLKYFLGLEVARS-SCGLFLSQRKY 275
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 67.0 bits (162), Expect = 1e-11
Identities = 27/53 (50%), Positives = 36/53 (66%)
Frame = +1
Query: 678 WLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERV 730
WL LL +L+VP +L+YCDN S H+ ANP+ H +TKH +D H VRER+
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERI 162
>AV769206
Length = 536
Score = 66.2 bits (160), Expect = 2e-11
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Frame = -3
Query: 99 RPYNTHKLAFRSAPCTFLGYSPMHKGYNCLTTEGKVIITRNVLFDETVFPF-----QFQT 153
RPYN+ KL+ S C F+GYS HKGY CL G++ I+++VLF E FP+ T
Sbjct: 528 RPYNSTKLSLHSKECVFIGYSINHKGYKCLDQSGRIYISKDVLFHEHRFPYPSLFPDETT 349
Query: 154 SKSSSDILLDSSLPTTSVIPLLPISNASPNVMPHANSVMPTVATNGSAPVVQTTVSDFSQ 213
S +S++ S++P S P + AS ++ +P + P + T++++ Q
Sbjct: 348 SSTSAEFFPLSTIPIVS--HTTPPALASSGFSSLGSATLP----SSFNPTAKLTLTEW*Q 187
Query: 214 P 214
P
Sbjct: 186 P 184
>BP084332
Length = 368
Score = 66.2 bits (160), Expect = 2e-11
Identities = 33/87 (37%), Positives = 54/87 (61%), Gaps = 1/87 (1%)
Frame = +2
Query: 645 NLVSWAAK-KQTVVARSSTEAEYRSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSV 703
N+ W A Q+ +A S+ EAEY S A+ T+++W++ L + ++ S + IYCDN +
Sbjct: 2 NVNFWEAT*GQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILES-NIPIYCDNTAA 178
Query: 704 VHLVANPILHTKTKHFALDLHFVRERV 730
+ L NPILH++ KH + HF+R+ V
Sbjct: 179 ISLSKNPILHSRAKHIEVKYHFIRDYV 259
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 62.8 bits (151), Expect = 2e-10
Identities = 29/76 (38%), Positives = 44/76 (57%)
Frame = +1
Query: 675 EIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQ 734
E+ WL +L +LRVP SL+YCD+ S H+ N + H +TKH +D H VRE++ K
Sbjct: 4 EL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAKL 183
Query: 735 VTVVNIPAPSQVSSTL 750
++ I + Q + L
Sbjct: 184 FHLLPISSVDQTADIL 231
>BP057233
Length = 473
Score = 61.2 bits (147), Expect = 6e-10
Identities = 22/64 (34%), Positives = 41/64 (63%)
Frame = -2
Query: 687 RVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQVTVVNIPAPSQV 746
++P +++CDNLS L +NP+LH ++KH +D+H++R++V +V V +P Q+
Sbjct: 472 KLPMPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQI 293
Query: 747 SSTL 750
+ L
Sbjct: 292 ADCL 281
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 60.8 bits (146), Expect = 8e-10
Identities = 42/145 (28%), Positives = 70/145 (47%), Gaps = 8/145 (5%)
Frame = +2
Query: 426 STLARFGFQAAKCDTSLFCK-FTKSETLYILVYVDDIIITGSSSTAIFSLIADLNAVFPL 484
S + G+ D + K F ++ + +L+YVDD+++ G + + L A L F +
Sbjct: 8 SFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDM 187
Query: 485 KDLGSLHYFLGIEA-THTKDGGLILSQTKYINDLLIKAKMDSINPSPTPMTSGLKLSAN- 542
KDLG + LG++ KD + LSQ Y+ +L + M NP TP+ KLS++
Sbjct: 188 KDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSM 367
Query: 543 -----SGALFPKPLLYRSVVGALHY 562
+ + + Y S VG+L Y
Sbjct: 368 IPSSEAERMEMSRVPYASAVGSLMY 442
>BP043850
Length = 515
Score = 60.5 bits (145), Expect = 1e-09
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = -1
Query: 674 TEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADK 733
+EI+WLR LLSEL S + ++ DN S + + ANP+ H T+H +D H VRE +
Sbjct: 515 SEIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRR 336
Query: 734 QVTVVNIPAPSQVSSTL 750
+T+ ++ Q++ L
Sbjct: 335 VITLPHVSTSVQIADIL 285
>AV766665
Length = 601
Score = 57.0 bits (136), Expect = 1e-08
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +3
Query: 589 WQAVK----RILRYLHGTATHGLYLRRPSSMSITAFADSDWGSDPDDRRSTSGMCIYIGG 644
W ++K RI YL + G ++ S+ F +D+ DR ST G +++ G
Sbjct: 345 WSSLKTFTTRIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSG 524
Query: 645 NLVSWAAKKQTVVARSSTEAEYRS 668
NLV+W +K+Q ++ARSS EAE R+
Sbjct: 525 NLVTWRSKQQNIIARSSGEAELRA 596
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 56.2 bits (134), Expect = 2e-08
Identities = 25/73 (34%), Positives = 45/73 (61%)
Frame = +3
Query: 675 EIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHFVRERVADKQ 734
E +WL L++LR+ + +IYCDN S +HL AN + H +T++ +D H V +V
Sbjct: 21 EALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGI 200
Query: 735 VTVVNIPAPSQVS 747
+ ++++P+ QV+
Sbjct: 201 LHLLHVPSSDQVA 239
>TC18909
Length = 621
Score = 54.3 bits (129), Expect = 7e-08
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +2
Query: 565 ITRPEIAFPLNKVCQFMHSPLEPHWQAVKRILRYL-HGTATHGLYLRRPSSMSITAFADS 623
+T P+I+F +NKVC F+ LE H A K IL T G +++ + AF+D+
Sbjct: 323 LTSPQISFSVNKVC*FLSESLEEHGTAGKCILNVT*KAL*TMGFFIQ----TNFPAFSDA 490
Query: 624 DWGSDPDDRRSTSGMCIYIGGNLVSW 649
DW S+ DDRRST ++ G W
Sbjct: 491 DWASNVDDRRSTFWEIVFTLGPKFRW 568
Score = 38.5 bits (88), Expect(2) = 3e-08
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = +2
Query: 341 DYNETFSPVVKPTTIRTVLSLALM 364
DY ET SPVVKP T+R +LSLA+M
Sbjct: 62 DYTETVSPVVKPVTVRILLSLAVM 133
Score = 36.6 bits (83), Expect(2) = 3e-08
Identities = 16/18 (88%), Positives = 17/18 (93%)
Frame = +1
Query: 320 GSINKHKPRLVAKGFHQT 337
GSINK+K RLVAKGFHQT
Sbjct: 1 GSINKYKARLVAKGFHQT 54
>AV767042
Length = 444
Score = 53.5 bits (127), Expect = 1e-07
Identities = 24/44 (54%), Positives = 30/44 (67%)
Frame = -3
Query: 336 QTEGYDYNETFSPVVKPTTIRTVLSLALMHQWPIRQFDFNNAFL 379
QT G D N+TFSPVVKP IRTV ++AL WPI Q + N ++
Sbjct: 349 QTAGVDCNKTFSPVVKPAPIRTVFTIALSRSWPIPQLNVQNLWI 218
>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (6%)
Length = 498
Score = 35.4 bits (80), Expect(2) = 3e-06
Identities = 13/41 (31%), Positives = 24/41 (57%)
Frame = +2
Query: 685 ELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHF 725
E V +P +++YCDN ++L N H+++KH + H+
Sbjct: 140 ERLVSLTPDTVLYCDNQGAIYLGQNSTFHSRSKHIDVRYHW 262
Score = 32.7 bits (73), Expect(2) = 3e-06
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 640 IYIGGNLVSWAAKKQTVVARSSTEAEYRSLALVITEIMWLRSLL 683
+ G V+W ++ Q VA S+ EAE+ + E++W+++ L
Sbjct: 6 VTFAGGAVAWPSRLQKCVALSTAEAEFIAATEACHELLWMKNFL 137
>BP084259
Length = 385
Score = 45.4 bits (106), Expect = 3e-05
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -3
Query: 667 RSLALVITEIMWLRSLLSELRVPTSPSSLIYCDNLSVVHLVANPILHTKTKHFALDLHF 725
R++ E +WL+ LL EL+ I+ +N++ ++ N + H+ KH ALD HF
Sbjct: 179 RTIGSTAAEFLWLQQLLKELQFSLPKVPCIFSNNINATYVCLNLVFHSHMKHVALDCHF 3
>AV427921
Length = 284
Score = 39.7 bits (91), Expect = 0.002
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = +1
Query: 13 TCPYVHQQNGRVEWKHRHITETGLALLAHAHMPLTFWGDAFETAAYLINQLPIPTLDLST 72
T Y QQNG E K+R I +LL + +P +F +A + +++N+ P +
Sbjct: 10 TAAYTPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMM 189
Query: 73 PLQKLYDKKPDYSFLKCFGCLCYPH 97
P + ++P + CL Y H
Sbjct: 190PEEAWSGRQPAVDHFRISRCLAYAH 264
>TC9030 similar to GB|AAM63479.1|21554372|AY086477 phospholipase-like
protein {Arabidopsis thaliana;}, partial (53%)
Length = 596
Score = 37.0 bits (84), Expect = 0.012
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Frame = +1
Query: 152 QTSKSSSDILLDSSLPTTSVIPLLPISNASPNVMPHANSVMPT-----VATNGSAPVVQT 206
Q+ + +S +SL T+S + ++ S + +P A+S P+ + N S P
Sbjct: 64 QSRRRTSTTPSATSLRTSSTLTTQ*VTAPSSSPIPAASSFSPSGGPHSLRPNQSEPSPSC 243
Query: 207 TVSDFSQPA*DSGVVHASAQPTEPPVPPSS-NVHSMTTRAKTG-IHRPKAYAAS-TALSS 263
T S SQ S + S +P PP P ++ + S T ++T + P + AS +++ S
Sbjct: 244 TASPASQAGSSSSPPYTSPKPDSPPAPSTTRDTASPTGSSRTSPMSTPSSMTASRSSIPS 423
Query: 264 VPTS 267
VP S
Sbjct: 424 VPAS 435
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,060,453
Number of Sequences: 28460
Number of extensions: 242499
Number of successful extensions: 1573
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of query: 768
length of database: 4,897,600
effective HSP length: 97
effective length of query: 671
effective length of database: 2,136,980
effective search space: 1433913580
effective search space used: 1433913580
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0378b.9