TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0378b.13
         (282 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13032                                                                56  8e-09
BP067260                                                               26  8.7

>TC13032 
          Length = 524

 Score = 55.8 bits (133), Expect = 8e-09
 Identities = 29/30 (96%), Positives = 29/30 (96%)
 Frame = +2

Query: 252 EGGRETCTYNCSIPY*RVYV**RSI***HT 281
           EGGRETCTYNCSIP *RVYV**RSI***HT
Sbjct: 2   EGGRETCTYNCSIPS*RVYV**RSI***HT 91


>BP067260 
          Length = 487

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (56%), Gaps = 4/28 (14%)
 Frame = +1

Query: 38  HDP*KL----CGFYLFLLWLWLVSKPLS 61
           HDP  +    C FY+F+ +LW    PLS
Sbjct: 196 HDPTGIFISSCHFYIFICFLWKEKFPLS 279


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.359    0.161    0.584 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,206,439
Number of Sequences: 28460
Number of extensions: 76410
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of query: 282
length of database: 4,897,600
effective HSP length: 89
effective length of query: 193
effective length of database: 2,364,660
effective search space: 456379380
effective search space used: 456379380
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 55 (25.8 bits)