BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0377b.7
(281 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8316 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Ara... 423 e-119
TC14962 similar to GB|AAP37696.1|30725348|BT008337 At5g15120 {Ar... 335 5e-93
TC8251 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Ara... 213 3e-56
TC8174 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Ara... 188 8e-49
TC14638 similar to UP|Q9SJI9 (Q9SJI9) Expressed protein, partial... 143 3e-35
TC8250 weakly similar to GB|AAO24559.1|27808558|BT003127 At5g398... 99 6e-22
AV425286 62 1e-10
TC10711 52 1e-07
AV772637 35 0.019
TC20240 weakly similar to UP|Q9SJI9 (Q9SJI9) Expressed protein, ... 35 0.019
BI420225 29 0.78
TC8987 similar to UP|ABPA_PRUPE (Q9ZRA4) Auxin-binding protein A... 28 1.7
AV778440 28 2.3
TC16696 similar to UP|Q9AR81 (Q9AR81) Germin-like protein precur... 27 3.0
AV775930 27 3.9
BP079814 27 3.9
TC11913 weakly similar to UP|ABPA_PRUPE (Q9ZRA4) Auxin-binding p... 27 5.1
BP070872 26 8.7
TC15166 similar to GB|AAK28312.1|13506739|AF224702 WRKY DNA-bind... 26 8.7
BP069608 26 8.7
>TC8316 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Arabidopsis
thaliana;}, partial (63%)
Length = 1796
Score = 423 bits (1087), Expect = e-119
Identities = 204/283 (72%), Positives = 238/283 (84%), Gaps = 2/283 (0%)
Frame = +2
Query: 1 MGIERTLADRKGRSFCELPRET-ITSSGSKRNRR-RQKKMPPVQKLFDTCKEVFASGGTG 58
MGI R +DRKGR CEL ET T+S S++NRR RQ+ + PVQ+LF TCK+VFAS G G
Sbjct: 233 MGIGRNSSDRKGRELCELSAETKSTNSKSRKNRRHRQRNVLPVQRLFQTCKQVFASTGPG 412
Query: 59 FIPPPQDIQRLQAVLDAIRPEDVGLKPDMPHFRSSSAQRIPKITYLHIYECEKFSMGIFC 118
+P PQ I+ L ++L I+PEDVGLKPDMP+F ++SA+++PKITYLHIYECE FSMGIFC
Sbjct: 413 VVPSPQHIEMLHSILAGIKPEDVGLKPDMPYFMNNSARKMPKITYLHIYECENFSMGIFC 592
Query: 119 LPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPESPTIVKPTENQALEMRLAKV 178
LPP GVIPLHNHP MTVFSKLLFGTMHIKSYDWVVDLP E PTI+K +E Q E RLAKV
Sbjct: 593 LPPGGVIPLHNHPEMTVFSKLLFGTMHIKSYDWVVDLPSEMPTILKSSEIQTQEKRLAKV 772
Query: 179 KVDADFTAPCNPSILYPEDGGNMHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNYPFSD 238
KVDADFTAPC+PSILYP DGGNMHCFTAVTACAVL VLGPPY+D +GRHC+YY+N+PFS+
Sbjct: 773 KVDADFTAPCDPSILYPTDGGNMHCFTAVTACAVLYVLGPPYNDPDGRHCSYYHNFPFSN 952
Query: 239 ISVEGISIPEEERNGYEWLQEKEQLEDLEVDGKMYSGPKIHES 281
S +GIS+PEEER GYEWLQE+E+ E +V GKMYSGPKI E+
Sbjct: 953 FS-DGISMPEEERTGYEWLQEREKPEKFQVAGKMYSGPKIVEN 1078
>TC14962 similar to GB|AAP37696.1|30725348|BT008337 At5g15120 {Arabidopsis
thaliana;}, partial (36%)
Length = 632
Score = 335 bits (859), Expect = 5e-93
Identities = 161/162 (99%), Positives = 161/162 (99%)
Frame = +1
Query: 1 MGIERTLADRKGRSFCELPRETITSSGSKRNRRRQKKMPPVQKLFDTCKEVFASGGTGFI 60
MGIERTLAD KGRSFCELPRETITSSGSKRNRRRQKKMPPVQKLFDTCKEVFASGGTGFI
Sbjct: 145 MGIERTLADIKGRSFCELPRETITSSGSKRNRRRQKKMPPVQKLFDTCKEVFASGGTGFI 324
Query: 61 PPPQDIQRLQAVLDAIRPEDVGLKPDMPHFRSSSAQRIPKITYLHIYECEKFSMGIFCLP 120
PPPQDIQRLQAVLDAIRPEDVGLKPDMPHFRSSSAQRIPKITYLHIYECEKFSMGIFCLP
Sbjct: 325 PPPQDIQRLQAVLDAIRPEDVGLKPDMPHFRSSSAQRIPKITYLHIYECEKFSMGIFCLP 504
Query: 121 PSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPESPTI 162
PSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPESPTI
Sbjct: 505 PSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPESPTI 630
>TC8251 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Arabidopsis
thaliana;}, partial (41%)
Length = 909
Score = 213 bits (542), Expect = 3e-56
Identities = 103/198 (52%), Positives = 139/198 (70%), Gaps = 1/198 (0%)
Frame = +3
Query: 41 VQKLFDTCKEVFASGGTGFIPPPQDIQRLQAVLDAIRPEDVGLKPDMPHFRSSSA-QRIP 99
++ LFD+C+E F T +P PQD+Q++ +LD IRP D GL D+ F+ + +
Sbjct: 21 LKDLFDSCRETFKGPDT--VPSPQDVQKMCHILDDIRPGDFGLSRDLQFFKPGNIIKENQ 194
Query: 100 KITYLHIYECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPES 159
++TY +Y+C FS+ IF +P GVIPLHNHPGMTVFSKLL G MHIKSYDWVV P S
Sbjct: 195 RVTYTTVYKCANFSLCIFFIPEKGVIPLHNHPGMTVFSKLLLGQMHIKSYDWVV--PEAS 368
Query: 160 PTIVKPTENQALEMRLAKVKVDADFTAPCNPSILYPEDGGNMHCFTAVTACAVLDVLGPP 219
++ +Q ++RLAK+K D FTAPC+ S+LYP GGN+H FTA+T CAVLDV+GPP
Sbjct: 369 DNLL----DQTTKLRLAKLKADNVFTAPCDTSVLYPTTGGNIHEFTAITPCAVLDVIGPP 536
Query: 220 YSDYEGRHCTYYNNYPFS 237
YS +GR C+YY ++P++
Sbjct: 537 YSKEDGRDCSYYRDHPYA 590
>TC8174 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Arabidopsis
thaliana;}, partial (24%)
Length = 1091
Score = 188 bits (478), Expect = 8e-49
Identities = 86/86 (100%), Positives = 86/86 (100%)
Frame = +2
Query: 196 EDGGNMHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNYPFSDISVEGISIPEEERNGYE 255
EDGGNMHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNYPFSDISVEGISIPEEERNGYE
Sbjct: 2 EDGGNMHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNYPFSDISVEGISIPEEERNGYE 181
Query: 256 WLQEKEQLEDLEVDGKMYSGPKIHES 281
WLQEKEQLEDLEVDGKMYSGPKIHES
Sbjct: 182 WLQEKEQLEDLEVDGKMYSGPKIHES 259
>TC14638 similar to UP|Q9SJI9 (Q9SJI9) Expressed protein, partial (61%)
Length = 826
Score = 143 bits (361), Expect = 3e-35
Identities = 70/164 (42%), Positives = 99/164 (59%), Gaps = 1/164 (0%)
Frame = +3
Query: 116 IFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPES-PTIVKPTENQALEMR 174
IFC+PPS +IPLHNHPGMTV SKLL+G+++ KSYDW+ D+P + P+ +P
Sbjct: 3 IFCMPPSSIIPLHNHPGMTVLSKLLYGSLYXKSYDWI-DVPGSADPSQARP--------- 152
Query: 175 LAKVKVDADFTAPCNPSILYPEDGGNMHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNY 234
AK+ D + TAP ++LYP GGN+H F A+T CA+ D+L PPYS RHCTY+
Sbjct: 153 -AKLVKDTEMTAPSPTTVLYPSSGGNIHSFQAITPCAIFDILSPPYSSEHERHCTYFRRS 329
Query: 235 PFSDISVEGISIPEEERNGYEWLQEKEQLEDLEVDGKMYSGPKI 278
D+ V + + + WL+E + +D + +Y GP I
Sbjct: 330 QKKDLPV-NLQLDGVTASEVTWLEEFQPPDDFVIRRGLYRGPVI 458
>TC8250 weakly similar to GB|AAO24559.1|27808558|BT003127 At5g39890
{Arabidopsis thaliana;}, partial (16%)
Length = 661
Score = 99.4 bits (246), Expect = 6e-22
Identities = 44/90 (48%), Positives = 63/90 (69%)
Frame = +3
Query: 192 ILYPEDGGNMHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNYPFSDISVEGISIPEEER 251
+LYP GGN+H FTA+T CAVLDV+GPPYS +GR C+YY ++P++ E IS +++
Sbjct: 3 VLYPTTGGNIHEFTAITPCAVLDVIGPPYSKEDGRDCSYYRDHPYAAFPNEEISEVKDKN 182
Query: 252 NGYEWLQEKEQLEDLEVDGKMYSGPKIHES 281
+ Y WL+E E E+ ++DG Y GP I E+
Sbjct: 183 DSYAWLEEIEMPENSQMDGIEYLGPPITET 272
>AV425286
Length = 320
Score = 62.0 bits (149), Expect = 1e-10
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Frame = +2
Query: 41 VQKLFDTCKEVFASGGTGFIPPPQDIQRLQAVLDAIRPEDVGLK-----PDMPH--FRSS 93
VQ L+D CK +F+ G P Q + +L ++LD ++P DVGL+ D H F +
Sbjct: 38 VQTLYDHCKSIFSLSGKPSPPSSQALLKLSSILDTVQPTDVGLRVETADDDRGHGFFGVN 217
Query: 94 SAQRIPK----ITYLHIYECEKFSMGIFCLPPS 122
R+ + ITY+ I+EC+ F+M +FC P S
Sbjct: 218 QLNRVARWAQPITYVDIHECDSFTMCMFCFPTS 316
>TC10711
Length = 620
Score = 51.6 bits (122), Expect = 1e-07
Identities = 26/55 (47%), Positives = 35/55 (63%)
Frame = +3
Query: 224 EGRHCTYYNNYPFSDISVEGISIPEEERNGYEWLQEKEQLEDLEVDGKMYSGPKI 278
EGR CTYY++YP+S S +G SI + E + Y WL E E DL + +Y+GP I
Sbjct: 9 EGRKCTYYHDYPYSTFSGKG-SIGDGEEDEYAWLAEIETPGDLYMRSGVYAGPAI 170
>AV772637
Length = 551
Score = 34.7 bits (78), Expect = 0.019
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +2
Query: 37 KMP-PVQKLFDTCKEVFASGGTGFIPPPQDIQRLQAVLDAIRPEDVGLKPDMPHFRSSSA 95
KMP +Q+L+ CK FA G + I ++Q L+ I+P DVGL+ + R+ SA
Sbjct: 317 KMPFYLQRLYRLCKASFAPDGP---VSEEAIAKVQEKLEKIKPIDVGLEQEAQVVRNGSA 487
Query: 96 QRI---------PKITYLHIY 107
+ I YLH++
Sbjct: 488 SALECNGNHQPPAPIKYLHLH 550
>TC20240 weakly similar to UP|Q9SJI9 (Q9SJI9) Expressed protein, partial
(25%)
Length = 495
Score = 34.7 bits (78), Expect = 0.019
Identities = 17/64 (26%), Positives = 31/64 (47%), Gaps = 4/64 (6%)
Frame = +2
Query: 219 PYSDYEGRHCTYYNNYPFSD----ISVEGISIPEEERNGYEWLQEKEQLEDLEVDGKMYS 274
PYS GRHC+Y+ D + + G+++ + WL+E + ++ + +Y
Sbjct: 2 PYSSDNGRHCSYFQKSSRKDLPETLEMNGVTVSD-----VTWLEEFQPPDEFAIRRGLYR 166
Query: 275 GPKI 278
GP I
Sbjct: 167 GPVI 178
>BI420225
Length = 319
Score = 29.3 bits (64), Expect = 0.78
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 41 VQKLFDTCKEVFASGGTGFIPPPQD-IQRLQAVLDAIRPEDVGLKPD 86
VQ+L+ CK F+ G P Q+ I+++ L+ I+P DVGL+ +
Sbjct: 176 VQRLYRLCKASFSPDG----PVSQEAIEKVCEKLEKIKPSDVGLEQE 304
>TC8987 similar to UP|ABPA_PRUPE (Q9ZRA4) Auxin-binding protein ABP19a
precursor, partial (97%)
Length = 985
Score = 28.1 bits (61), Expect = 1.7
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 121 PSGVIPLHNHPG 132
P GVIPLH HPG
Sbjct: 304 PGGVIPLHTHPG 339
>AV778440
Length = 489
Score = 27.7 bits (60), Expect = 2.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 118 CLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPESPTIVKPTENQA 170
C+P SGV+P P +T+ + I +LPPESP + P+ A
Sbjct: 216 CIPYSGVLPNIEVPEVTLMAL-------ITMLPAAPNLPPESPPLPPPSPKAA 79
>TC16696 similar to UP|Q9AR81 (Q9AR81) Germin-like protein precursor,
partial (96%)
Length = 834
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 119 LPPSGVIPLHNHPGMTVFSKLLFGTM 144
L GVIPLH HPG + ++ GT+
Sbjct: 265 LASGGVIPLHTHPGASEALVVVQGTI 342
>AV775930
Length = 421
Score = 26.9 bits (58), Expect = 3.9
Identities = 12/31 (38%), Positives = 20/31 (63%)
Frame = +3
Query: 242 EGISIPEEERNGYEWLQEKEQLEDLEVDGKM 272
EG+SI +E + Y WL + +E L+ DG++
Sbjct: 330 EGLSI-SQETDLYNWLHDTPSMEVLDSDGRL 419
>BP079814
Length = 517
Score = 26.9 bits (58), Expect = 3.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 8 ADRKGRSFCELPRETITSSGSKRNRRRQKKMPPVQKLF 45
A R+G + C + +S+ ++RN+ R+ PP+ LF
Sbjct: 320 AGRRGNAECTVGVRRNSSTTARRNKWRRANHPPLHPLF 433
>TC11913 weakly similar to UP|ABPA_PRUPE (Q9ZRA4) Auxin-binding protein
ABP19a precursor, partial (61%)
Length = 530
Score = 26.6 bits (57), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 119 LPPSGVIPLHNHPGMTVFSKLLFGTMHI 146
L GV+P+H+HPG + +L G + +
Sbjct: 52 LDAGGVVPIHSHPGASELVIILQGRITV 135
>BP070872
Length = 472
Score = 25.8 bits (55), Expect = 8.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 226 RHCTYYNNYPFSDISVEGISI 246
RH T+YNNY FS V +S+
Sbjct: 139 RHYTFYNNYSFSLQQVTCLSL 201
>TC15166 similar to GB|AAK28312.1|13506739|AF224702 WRKY DNA-binding protein
6 {Arabidopsis thaliana;} , partial (26%)
Length = 668
Score = 25.8 bits (55), Expect = 8.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 204 FTAVTACAVLDVLGPPYSDYEGRHCTYYNN 233
FTAV A A+ ++G +++ G H NN
Sbjct: 300 FTAVLAAAISSIIGGSHANNNGSHNNNNNN 389
>BP069608
Length = 494
Score = 25.8 bits (55), Expect = 8.7
Identities = 11/32 (34%), Positives = 17/32 (52%), Gaps = 4/32 (12%)
Frame = -1
Query: 130 HPGMTVFSKLLFG----TMHIKSYDWVVDLPP 157
HPG VF + G +H+K +D + +PP
Sbjct: 311 HPGPAVFHDRMRGWKCCDVHVKEFDEFISIPP 216
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,816,236
Number of Sequences: 28460
Number of extensions: 94208
Number of successful extensions: 420
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of query: 281
length of database: 4,897,600
effective HSP length: 89
effective length of query: 192
effective length of database: 2,364,660
effective search space: 454014720
effective search space used: 454014720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0377b.7