BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0375a.8
(606 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18952 similar to GB|AAD54324.1|5853119|AF177212 threonine dehy... 538 e-153
TC15315 similar to UP|Q8GUG5 (Q8GUG5) Threonine dehydratase/deam... 207 4e-54
TC14185 similar to UP|Q7Y256 (Q7Y256) Beta-cyanoalanine synthase... 64 5e-11
TC13392 similar to UP|Q9T0D1 (Q9T0D1) T5C23.70 protein , partial... 59 2e-09
TC8523 homologue to UP|Q8W1A0 (Q8W1A0) Cysteine synthase, complete 51 6e-07
TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich... 36 0.016
TC8122 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, partia... 35 0.027
CB829188 34 0.059
TC14693 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloro... 34 0.059
TC10239 similar to UP|Q7NEZ8 (Q7NEZ8) Glr3729 protein, partial (8%) 33 0.13
BI418736 33 0.17
TC14636 weakly similar to UP|Q9ZUS6 (Q9ZUS6) At2g37400 protein, ... 32 0.23
BP072692 32 0.29
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 32 0.29
TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3,... 32 0.38
BP079489 31 0.66
AW719654 30 0.86
BP028689 30 0.86
TC19912 30 0.86
TC14365 similar to UP|Q9XFC1 (Q9XFC1) Stearoyl acyl carrier prot... 30 1.1
>TC18952 similar to GB|AAD54324.1|5853119|AF177212 threonine
dehydratase/deaminase {Arabidopsis thaliana;} , partial
(49%)
Length = 951
Score = 538 bits (1385), Expect = e-153
Identities = 271/311 (87%), Positives = 288/311 (92%), Gaps = 1/311 (0%)
Frame = +1
Query: 86 GYLGAVPDRSRSDGGSDSDAM-LTAMANILSAKVYDVAIESPLQLAPKLSERIGVNLWLK 144
GYLGAVP RSRSDGGSD A + + +ILS+KVYDVAIESPLQ+A KLSER+GVN+WLK
Sbjct: 19 GYLGAVPHRSRSDGGSDDIASAMRYLTSILSSKVYDVAIESPLQMATKLSERLGVNIWLK 198
Query: 145 REDLQPVFSFKLRGAYNMMVKLPKELLEKGVICSSAGNHAQGVALAAKRLNCNAVVAMPV 204
REDLQPVFSFKLRGAYNMM KLPKELLEKGVICSSAGNHAQGVALAAKRLNC+AV+ MPV
Sbjct: 199 REDLQPVFSFKLRGAYNMMAKLPKELLEKGVICSSAGNHAQGVALAAKRLNCSAVIVMPV 378
Query: 205 TTPDIKWKSVEKLGATVVLIGDSYDEAQAYAKKRGIEEGRTFVPAFDHPDVIMGQGTVGM 264
TTPDIKWKSVEK+GATVVLIGDSYDEAQ YAKKRG EEGR F+P FDHPDVIMGQGTVGM
Sbjct: 379 TTPDIKWKSVEKMGATVVLIGDSYDEAQTYAKKRGKEEGRAFIPPFDHPDVIMGQGTVGM 558
Query: 265 EIMRQMVDPVHAIFVPVGGGGLIAGIAAYVKTVSPQVKIIGVEPTDANTMALSLHHDQRV 324
EI+RQM PVHAIFVPVGGGGLIAGIAAYVK VSPQVKIIGVEP+DAN MALSLHH +RV
Sbjct: 559 EIVRQMQGPVHAIFVPVGGGGLIAGIAAYVKRVSPQVKIIGVEPSDANAMALSLHHGKRV 738
Query: 325 ILDQVGGFADGVAVKEVGEETFRLCKDLIDGVVLVNRDSICASIKDMFEENRSILEPSGA 384
ILDQVGGFADGVAVKEVGEE FR+CK+LIDGVVLV RDSICASIKDMFEE RSILEP+GA
Sbjct: 739 ILDQVGGFADGVAVKEVGEEPFRICKELIDGVVLVGRDSICASIKDMFEEKRSILEPAGA 918
Query: 385 LALAGAEAYCK 395
LALAGAEAYCK
Sbjct: 919 LALAGAEAYCK 951
>TC15315 similar to UP|Q8GUG5 (Q8GUG5) Threonine dehydratase/deaminase
(OMR1), partial (19%)
Length = 615
Score = 207 bits (527), Expect = 4e-54
Identities = 97/114 (85%), Positives = 106/114 (92%)
Frame = +2
Query: 493 KSSHLKTHDLTENDLVKDHLRYMMGGRSDVENEVLCRFIFPERPGALMKFLDSFSPRWNI 552
+SS L+THDLTE++LVKDHLRY+MGGRS+V+NEVLCRF FPERPGALM FLDSFSPRWNI
Sbjct: 2 ESSQLETHDLTESELVKDHLRYLMGGRSNVQNEVLCRFTFPERPGALMNFLDSFSPRWNI 181
Query: 553 SLFHYRGEGETRANILVGIQVPRTEMDEFHERANRLGYEYKVVNDDDDFQLLMH 606
SLFHYR EG RA+ILVGIQVPR EMDEFH RANRLGYEYKVVN+DDDFQLLMH
Sbjct: 182 SLFHYRAEGAARADILVGIQVPRNEMDEFHGRANRLGYEYKVVNNDDDFQLLMH 343
>TC14185 similar to UP|Q7Y256 (Q7Y256) Beta-cyanoalanine synthase, partial
(96%)
Length = 1506
Score = 64.3 bits (155), Expect = 5e-11
Identities = 54/211 (25%), Positives = 95/211 (44%), Gaps = 8/211 (3%)
Frame = +1
Query: 112 NILSAKVYDVAIESPLQLAPKLSERIGVNLWLKREDLQPVFSFKLRGAYNMMVKLPKE-L 170
N + V ++ +PL K++E G + +K+E +QP S K R A M+ K+ L
Sbjct: 232 NNIKKHVSELIGRTPLVYLNKVTEGCGAYIAVKQEMMQPTASVKDRPALAMIADAEKKNL 411
Query: 171 LEKG---VICSSAGNHAQGVALAAKRLNCNAVVAMPVTTPDIKWKSVEKLGATVVLIGDS 227
+ G +I ++GN +A V+ MP T + ++ GA ++L +
Sbjct: 412 ITPGKTILIEPTSGNMGISMAFIGALKGYKVVLTMPSYTSMERRVTMRAFGAELILTDPA 591
Query: 228 YDEAQAYAKKRGIEEGRT---FVPAFDHP-DVIMGQGTVGMEIMRQMVDPVHAIFVPVGG 283
K + E + F +P + + T G EI V + +G
Sbjct: 592 KGMGGTVKKAYDLLESTPNAFMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGS 771
Query: 284 GGLIAGIAAYVKTVSPQVKIIGVEPTDANTM 314
GG ++G+ Y+K+ +P VKI GVEP+++N +
Sbjct: 772 GGTVSGVGQYLKSKNPNVKIYGVEPSESNVL 864
>TC13392 similar to UP|Q9T0D1 (Q9T0D1) T5C23.70 protein , partial (40%)
Length = 546
Score = 59.3 bits (142), Expect = 2e-09
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Frame = +2
Query: 288 AGIAAYVKTVSPQVKIIGVEPTDANTMALSLHHDQRVILDQVGGFADGVAVKEVGEETFR 347
+G+A K+++P ++I+ EP A+ A S + + L + ADG+ +G+ T+
Sbjct: 2 SGVALAAKSINPAIRILAAEPKGADDAAQSKAAGRIITLPETNTIADGLRAF-LGDFTWP 178
Query: 348 LCKDLIDGVVLVNRDSICASIKDMFEENRSILEPSGALALAG----------AEAYCKYY 397
+ +DL++ ++ V+ I ++K FE + ++EPSGA+ LA A C +
Sbjct: 179 VVRDLVEDIITVDDSEIIKAMKLCFEILKVVVEPSGAIGLAAVLSDTFQKNPAWKDCNHI 358
Query: 398 GI--KGGNV 404
GI GGNV
Sbjct: 359 GIVVSGGNV 385
>TC8523 homologue to UP|Q8W1A0 (Q8W1A0) Cysteine synthase, complete
Length = 1361
Score = 50.8 bits (120), Expect = 6e-07
Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 10/275 (3%)
Frame = +3
Query: 124 ESPLQLAPKLSERIGVNLWLKREDLQPVFSFKLRGAYNMMVKLP-KELLEKG---VICSS 179
++PL KL++ + K E ++P S K R Y+M+ K L+ G +I +
Sbjct: 129 KTPLVYLNKLADGCVARVAAKLELMEPCSSVKDRIGYSMIADAEEKGLITPGKSVLIEPT 308
Query: 180 AGNHAQGVALAAKRLNCNAVVAMPVTTPDIKWKSVEKLGATVVLIGDSYDEAQAYAKKRG 239
+GN G+A A ++ MP + + + GA +VL + A K
Sbjct: 309 SGNTGIGLAFMAAAKGYKLIITMPASMSLERRTILLAFGAELVLTDPAKGMKGAVQKAEE 488
Query: 240 I---EEGRTFVPAFDHP-DVIMGQGTVGMEIMRQMVDPVHAIFVPVGGGGLIAGIAAYVK 295
I + F++ + + T G EI + V A+ VG GG I G Y+K
Sbjct: 489 IVAKTPNSYMLQQFENAANPKVHYETTGPEIWKGTAGKVDALVSGVGTGGTITGAGKYLK 668
Query: 296 TVSPQVKIIGVEPTDANTMALSLHHDQRVILDQVG-GFADGVAVKEVGEETFRLCKDLID 354
+ +K+I VEP ++ ++ ++ +G GF GV L +L+D
Sbjct: 669 EQNSNIKMIAVEPVESPVLSGGKPGPHKI--QGIGAGFVPGV-----------LDVNLLD 809
Query: 355 GVVLVNRDSICASIKDM-FEENRSILEPSGALALA 388
V+ ++ D + K + +E + SGA A A
Sbjct: 810 EVIQISSDEAIETAKLLALKEGLFVGISSGAAAAA 914
>TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich
glycoprotein (HRGP) (Fragment), partial (8%)
Length = 417
Score = 36.2 bits (82), Expect = 0.016
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Frame = +1
Query: 12 PHHPSPPPLLRRHAFHKMPTNVLHPN--PRRKPFIAATISKPAEITPSPSSSS------A 63
P P PPP H+ PT HP+ PR P +T+ P PSPS S+ +
Sbjct: 37 PSPPPPPPCHSLHSPSPSPTPPPHPHGPPRINPLHHSTLFNPPHHKPSPSPSTNRTFSGS 216
Query: 64 AVGDHLSSPR-----LRVSP 78
+ + SPR LR SP
Sbjct: 217 TAPNQIHSPRYLNTILRFSP 276
>TC8122 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, partial (74%)
Length = 1505
Score = 35.4 bits (80), Expect = 0.027
Identities = 25/68 (36%), Positives = 31/68 (44%), Gaps = 9/68 (13%)
Frame = +2
Query: 15 PSPPPLLRRHAFHKMPTNVLHPNPRRK---------PFIAATISKPAEITPSPSSSSAAV 65
PSP P ++H PT+ P+P R PFI S P + P S+SA V
Sbjct: 485 PSPVP-----SYHASPTSSSFPSPTRMDASPSSFLLPFIRNITSIPTNLPPLRISNSAPV 649
Query: 66 GDHLSSPR 73
LSSPR
Sbjct: 650 TPPLSSPR 673
>CB829188
Length = 236
Score = 34.3 bits (77), Expect = 0.059
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Frame = +2
Query: 12 PHHPSPPPLLRRHAFH--------KMPTNVLHPNPRRKPF------IAATISKPAEITPS 57
P P PPP L + H P + HPNP KP AT+S PA T +
Sbjct: 32 PPQPPPPPPLHSSSSHPPSLSTLNPSPPSHSHPNPSPKPLPSPSTTTRATLS*PASTTAT 211
Query: 58 PSSSSAA 64
P+S A
Sbjct: 212PTSKPPA 232
>TC14693 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloroplast
nucleoid DNA binding protein-like {Arabidopsis
thaliana;} , partial (58%)
Length = 2067
Score = 34.3 bits (77), Expect = 0.059
Identities = 40/151 (26%), Positives = 65/151 (42%), Gaps = 9/151 (5%)
Frame = +2
Query: 12 PHHPSPPPLLRRHAFHKMPTNVLHPNPRRKPFIAATISKPAEITPSPSSSSAAVGDHLSS 71
P SPPP + F + N+ + R+KP I+ P + PSPSS + + SS
Sbjct: 152 PSSTSPPPSTKLTKFSPIALNLWNLLSRKKP-----ITNPLPLPPSPSSYTQ---EGQSS 307
Query: 72 PRLRVSPDSLQYEPGYLGAVPDRSRSDGGSDSDAMLTAMANILSAKVYDVAIESPLQLAP 131
+ V+ + Y P L P+ +RS S S + T N +S + + +L+P
Sbjct: 308 MKNTVTTKT-SYFPDSLVTQPESTRSP*SSSSHS--TVSTNRISTRPRWTSFYR--RLSP 472
Query: 132 KLSERIGV---------NLWLKREDLQPVFS 153
+LS + V ++W+ L FS
Sbjct: 473 RLSPPVPVKAAASTSAGSVWVNPRSLSTWFS 565
>TC10239 similar to UP|Q7NEZ8 (Q7NEZ8) Glr3729 protein, partial (8%)
Length = 629
Score = 33.1 bits (74), Expect = 0.13
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -3
Query: 12 PHHPSPPPLLRRHAFHKMPTNVLHPNPRRKPFIAATISKPAEITPS-PSSSSAAVGDHLS 70
PH P PP + + PT+ PNP P A+ SKP +TP+ P + H S
Sbjct: 450 PHSPPPPS---KSSSSLSPTS---PNPTPAPPPTASSSKPPSLTPTRPFRLTPIPSTHGS 289
Query: 71 SPRLRVSPDS 80
P + SP S
Sbjct: 288 LPAPKTSPPS 259
>BI418736
Length = 544
Score = 32.7 bits (73), Expect = 0.17
Identities = 24/81 (29%), Positives = 36/81 (43%), Gaps = 8/81 (9%)
Frame = +2
Query: 13 HHPSPPPLLR-RHAFHKMPTNVLHPNPRRKPFIAATISKPAEITPSPSS-------SSAA 64
H P P P L +H +PT+ P P I+ T+SK PSPS+ SS A
Sbjct: 86 HLPIPTPSLSPKHTHSSVPTSPSKPTPTAAYSISPTLSKSPPPPPSPSTAH*AAPQSSPA 265
Query: 65 VGDHLSSPRLRVSPDSLQYEP 85
++ +SP++ + P
Sbjct: 266 TPPPYNTSSRPISPNTRRAAP 328
>TC14636 weakly similar to UP|Q9ZUS6 (Q9ZUS6) At2g37400 protein, partial
(43%)
Length = 1316
Score = 32.3 bits (72), Expect = 0.23
Identities = 33/124 (26%), Positives = 54/124 (42%), Gaps = 5/124 (4%)
Frame = +3
Query: 7 STTTHPHHPSPP-PLLRRHAFHK-MPTN--VLHPNPRRKP-FIAATISKPAEITPSPSSS 61
+ T H HHPSPP P H H +P+N V P+P P + T +K PS S
Sbjct: 69 AATFHQHHPSPPSPSAPNHHLHSLLPSNHHVSEPHPHPHPTTLLLTTAKTLSSEPSFHLS 248
Query: 62 SAAVGDHLSSPRLRVSPDSLQYEPGYLGAVPDRSRSDGGSDSDAMLTAMANILSAKVYDV 121
S + +SP + S P S+ +D++A+ + + + A+ D
Sbjct: 249 S----NPPTSP*SQPHSSSCASSSSPPRPPPHSYLSNNPADTEALRSLVEVKVRARKIDE 416
Query: 122 AIES 125
A+++
Sbjct: 417 AVQA 428
>BP072692
Length = 422
Score = 32.0 bits (71), Expect = 0.29
Identities = 19/59 (32%), Positives = 26/59 (43%), Gaps = 3/59 (5%)
Frame = +2
Query: 9 TTHPHHP---SPPPLLRRHAFHKMPTNVLHPNPRRKPFIAATISKPAEITPSPSSSSAA 64
T PHH PPP R ++ P+ P A +S P TPSPS S+++
Sbjct: 134 TKLPHHGLRFHPPPRPHRRQLTATTSSSATPSSSPTPSAAPPLSSPPSSTPSPSPSTSS 310
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 32.0 bits (71), Expect = 0.29
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = +1
Query: 11 HPHHPSPPPLLRRHAFHKMPTNVLHPNPRRKPFIAATISKPAEITPSP 58
+P PSPPPLL F L PNP + P I P + PSP
Sbjct: 508 NPFQPSPPPLLP-DPFQPPSPPPLFPNPFQPPSPPPLIPNPFQPPPSP 648
>TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3, P1 clone:
MCB17, partial (12%)
Length = 468
Score = 31.6 bits (70), Expect = 0.38
Identities = 26/91 (28%), Positives = 35/91 (37%), Gaps = 12/91 (13%)
Frame = +3
Query: 3 ALRFSTTTHPHHPSPPPLLRRHAFHKMPTNVLHPNPRRKPFIAAT---ISKPAEITPS-- 57
A R THP P PPP H L P P +A I+ P +PS
Sbjct: 159 ANRVGRPTHPPPPPPPPTPNLHRIPNPNPITLPPTPNLTLILAPNIQPITHP*SPSPSLS 338
Query: 58 -------PSSSSAAVGDHLSSPRLRVSPDSL 81
P++S+ + + SSP +P SL
Sbjct: 339 AAHHPLQPTASTCSSAEPSSSPTAASAPTSL 431
>BP079489
Length = 418
Score = 30.8 bits (68), Expect = 0.66
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +3
Query: 4 LRFSTTTHPHHPSPPPLLRRHAFHKMPTNVLHPNPRRKPFIAATISKPAEITPSPS 59
L +T H HHP PPPL A +P P +AA S ++P+ S
Sbjct: 219 LPIGSTNHRHHPPPPPLAASSA---VPWKTSAPPTSSAASLAAASSGSPTLSPTKS 377
>AW719654
Length = 491
Score = 30.4 bits (67), Expect = 0.86
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 11 HPHHPSPPPLLRRHAFHKMPTNVLHPNPRRKPFIAATISKPAEITPSP 58
HPH P+P H FH ++LH +P P P TP P
Sbjct: 147 HPHSPTPDRATLHHGFH----SILHRHPPLPPPPPPLPPLPQTATPPP 278
>BP028689
Length = 563
Score = 30.4 bits (67), Expect = 0.86
Identities = 18/55 (32%), Positives = 26/55 (46%)
Frame = +3
Query: 7 STTTHPHHPSPPPLLRRHAFHKMPTNVLHPNPRRKPFIAATISKPAEITPSPSSS 61
ST H H PPP+ + H PT P P P + A+ P++ + +P SS
Sbjct: 63 STGHHMSHSPPPPMASSPSIHNHPT----PPPLPHPLLLAS---PSQRSSTPGSS 206
>TC19912
Length = 579
Score = 30.4 bits (67), Expect = 0.86
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -2
Query: 13 HHPSPPPLLRRHAFHKMPTNVLHPNPRRKPFIAATISKPAEITPSPS 59
HHPSPPP A P N HP R I+ +PA SP+
Sbjct: 560 HHPSPPPAAHSFAPLSDPDNAHHPISRHNHQIST--QQPATKLHSPT 426
>TC14365 similar to UP|Q9XFC1 (Q9XFC1) Stearoyl acyl carrier protein
desaturase Lldd3A20, partial (94%)
Length = 1539
Score = 30.0 bits (66), Expect = 1.1
Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +3
Query: 8 TTTHPHHPSPPPL-LRRHA 25
T T PHHPSPPP RRH+
Sbjct: 108 TVTTPHHPSPPPPPYRRHS 164
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,681,359
Number of Sequences: 28460
Number of extensions: 139994
Number of successful extensions: 1463
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of query: 606
length of database: 4,897,600
effective HSP length: 96
effective length of query: 510
effective length of database: 2,165,440
effective search space: 1104374400
effective search space used: 1104374400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0375a.8