BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0371b.8
(310 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP065719 55 2e-08
BP033666 39 6e-08
AV408480 46 9e-06
TC19505 weakly similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, par... 43 8e-05
AV416351 40 5e-04
BI420016 39 9e-04
TC11488 homologue to UP|Q84W07 (Q84W07) At1g18890, partial (18%) 39 9e-04
AV411591 39 9e-04
TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1... 39 0.001
TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-... 39 0.001
TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%) 39 0.001
TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate... 39 0.001
BP030058 39 0.001
TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (... 38 0.002
TC14729 homologue to UP|Q8W590 (Q8W590) At2g32080/F22D22.17, par... 38 0.002
BP058142 38 0.002
TC8200 weakly similar to UP|Q9JGS9 (Q9JGS9) PORF2b, partial (23%) 38 0.002
TC12459 37 0.003
AV408970 37 0.004
AV429304 37 0.004
>BP065719
Length = 567
Score = 54.7 bits (130), Expect = 2e-08
Identities = 32/120 (26%), Positives = 59/120 (48%), Gaps = 2/120 (1%)
Frame = +3
Query: 106 FSEDVESVAIPDNMKTLVLDSYSGDSDPK--DHLLYFNTKMVIIAASDAVKCRMFPSTFK 163
F E+V +P K +SGDS +H+ + + +A ++ +K + FPS+
Sbjct: 135 FIEEVLESELPRGWKVPKFTKFSGDSGESTVEHIARYQIEAGDLAINENLKMKYFPSSLT 314
Query: 164 STAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 223
A WFTTL S+ + F QF + + V+ DL +++++ ES+ +Y+ R+
Sbjct: 315 KNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECK-VSXKDLASVKRKPAESIDDYLNRF 491
>BP033666
Length = 342
Score = 38.9 bits (89), Expect(2) = 6e-08
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -1
Query: 184 FSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 223
F + FL FSAN+ Q T DL+NI QQ GE ++ Y + Y
Sbjct: 273 FFN*FLTXFSANQTQKATSADLFNICQQVGERVRPYFSLY 154
Score = 33.9 bits (76), Expect(2) = 6e-08
Identities = 15/26 (57%), Positives = 17/26 (64%)
Frame = -2
Query: 161 TFKSTAMAWFTTLPRGSISNFRDFSS 186
+FK AM WF P SISNF DFS+
Sbjct: 341 SFKGVAMTWFIKQPPYSISNFTDFST 264
>AV408480
Length = 262
Score = 45.8 bits (107), Expect = 9e-06
Identities = 20/48 (41%), Positives = 26/48 (53%)
Frame = +2
Query: 10 PVRTTGVQSPSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVT 57
P ++ + PS SPP PPPPPSPS +P+N P P P +T
Sbjct: 110 P*PSSPISPPSSTTSPPPPPPPPSPSPQPPTRPAPQNGPDPNSAPPLT 253
>TC19505 weakly similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, partial (12%)
Length = 723
Score = 42.7 bits (99), Expect = 8e-05
Identities = 19/39 (48%), Positives = 21/39 (53%)
Frame = +1
Query: 18 SPSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAV 56
SP PPP PP PPPPP P + L SP S P P +
Sbjct: 433 SPPPPPPPPPPPPPPVPLNLNCLPFSPTFSLTPLLHPQI 549
Score = 29.3 bits (64), Expect = 0.89
Identities = 15/37 (40%), Positives = 19/37 (50%)
Frame = +3
Query: 23 PSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVTQE 59
P+ P P PSPSQ S S N+P+P P + E
Sbjct: 522 PNSPSSSPNPSPSQSNSSRSS--NAPSPSPNPKTSTE 626
>AV416351
Length = 428
Score = 40.0 bits (92), Expect = 5e-04
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +3
Query: 9 SPVRTTGVQSPSPPPSPPVPPPPPSPSQVGSLER--SPEN----SPAPEQQPAVTQEQWR 62
SP+ S S PP P PPPPP PS S E+ SP N SP P Q P ++
Sbjct: 45 SPLPKAPPFSSSSPPRNPRPPPPPPPSSSSSPEKKNSPINHVLPSPTPHQSPKTIRQSDL 224
Query: 63 NLMRS 67
+ M S
Sbjct: 225 SPMNS 239
>BI420016
Length = 559
Score = 39.3 bits (90), Expect = 9e-04
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 18 SPSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPA 55
+PSPP SP + PPP PS + SP + P+P P+
Sbjct: 236 TPSPPSSPTLTPPPSPPSPTPNAPLSPSSPPSPPTPPS 349
Score = 36.2 bits (82), Expect = 0.007
Identities = 21/53 (39%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Frame = +2
Query: 9 SPVRTTGVQSPSPPPSPPV----PPPPPSPSQVGSLERSPENSPAPEQQPAVT 57
SP T PSP P+ P+ PP PP+P SP SPAP P+ T
Sbjct: 254 SPTLTPPPSPPSPTPNAPLSPSSPPSPPTPP-------SPPPSPAPNPTPSAT 391
Score = 36.2 bits (82), Expect = 0.007
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 18 SPSPPPSPPVPP-PPPSPSQVGSLERSPENSPAPEQQP 54
SPS PPSPP PP PPPSP+ + + +P+ P
Sbjct: 311 SPSSPPSPPTPPSPPPSPAPNPTPSATGSTTPSSPLTP 424
Score = 33.9 bits (76), Expect = 0.036
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 8 DSPVRTTGVQSPSPPPSPPVPPPP-PSPSQVGSLERSPENSP 48
++P+ + SP PPSPP P P P+PS GS S +P
Sbjct: 299 NAPLSPSSPPSPPTPPSPPPSPAPNPTPSATGSTTPSSPLTP 424
>TC11488 homologue to UP|Q84W07 (Q84W07) At1g18890, partial (18%)
Length = 670
Score = 39.3 bits (90), Expect = 9e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 13 TTGVQSPSPPPSPPVPPPPPSPSQVGSLERSPEN 46
T ++P PPP PP PPPP P++ G ++ +N
Sbjct: 386 TWWTETPPPPPQPPQPPPPNQPTRTGKRSQTTKN 285
>AV411591
Length = 258
Score = 39.3 bits (90), Expect = 9e-04
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = +1
Query: 2 PHRVVLDSPVRTTGVQSPSPPPSPPVPPPPPSPSQVGSLERSPENSPAP 50
P+R+ P + S SPPP P PPP PSP + ++ S ++ P P
Sbjct: 91 PYRISTSPPSPSA---SSSPPPGPTTPPPAPSPLSLSTVAVSSKSPPCP 228
>TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1A
(Forkhead-related protein FKHL2) (Transcription factor
BF-2) (Brain factor 2) (BF2) (HFK2), partial (6%)
Length = 1032
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/48 (43%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Frame = +2
Query: 10 PVRTTGVQS--------PSPPPSPPVPPPPPSPSQVGSLERSPENSPA 49
P RTT S P PPP PP PPPPP S S P S A
Sbjct: 83 PNRTTASHSSPNP*SLAPPPPPPPPPPPPPPRRSPTASCASPPSTSKA 226
>TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-associated
channel homolog (AT3g46740/T6H20_230), partial (10%)
Length = 469
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -1
Query: 19 PSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVTQEQWRNL 64
PSPPP P PPPPP P P P P ++ V +WR +
Sbjct: 289 PSPPPPPNQPPPPPPPV-------VPPPPPPPVERKGVRGVEWRTM 173
Score = 31.6 bits (70), Expect = 0.18
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +1
Query: 19 PSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQ 53
PS PPS PPPPPS S + SP +SP E +
Sbjct: 133 PSLPPSHSPPPPPPSSS---TPPLSPPSSPRAEAE 228
Score = 29.3 bits (64), Expect = 0.89
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 9 SPVRTTGVQSPSPPPSPPVPPPPP 32
SP P PPP P PPPPP
Sbjct: 286 SPPPPPNQPPPPPPPVVPPPPPPP 215
Score = 28.5 bits (62), Expect = 1.5
Identities = 16/36 (44%), Positives = 17/36 (46%), Gaps = 1/36 (2%)
Frame = +1
Query: 18 SPSPPPSPPVPPPPP-SPSQVGSLERSPENSPAPEQ 52
S SPPP PP PP SP E E PA E+
Sbjct: 148 SHSPPPPPPSSSTPPLSPPSSPRAEAEVEAPPAEEE 255
Score = 28.5 bits (62), Expect = 1.5
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -1
Query: 17 QSPSPPPS--PPVPPPPPSPSQVGSLERSPENSPAPEQQPAV 56
Q P PPP PP PPPP V +E + A E V
Sbjct: 265 QPPPPPPPVVPPPPPPPVERKGVRGVEWRTMEAAAEESATVV 140
>TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%)
Length = 562
Score = 38.5 bits (88), Expect = 0.001
Identities = 23/57 (40%), Positives = 28/57 (48%), Gaps = 8/57 (14%)
Frame = +1
Query: 9 SPVRT-----TGVQSPSP---PPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVT 57
SPV T T ++PSP PP P+PP PSPS SP +P+P P T
Sbjct: 4 SPVYTPPSIPTPPKTPSPGNQPPHTPIPPKTPSPSYSPPNVPSPPKAPSPNNHPPYT 174
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/47 (40%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Frame = +1
Query: 14 TGVQSPSP---PPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVT 57
T +PSP PP P PP PSP+ +P N+P+P QP T
Sbjct: 274 TPPSTPSPISQPPYTPTPPKTPSPTSQPPHTPTPPNTPSPISQPPYT 414
Score = 36.6 bits (83), Expect = 0.006
Identities = 21/51 (41%), Positives = 24/51 (46%), Gaps = 3/51 (5%)
Frame = +1
Query: 10 PVRTTGVQSPSP---PPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVT 57
P T +PSP PP P PP PSP+ SP NS +P QP T
Sbjct: 358 PHTPTPPNTPSPISQPPYTPTPPKTPSPTNQPPHIPSPPNSSSPTSQPPNT 510
Score = 36.2 bits (82), Expect = 0.007
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 10 PVRTTGVQSPSP---PPSPPVPPPPPSPSQVGSLERSPENSPAPEQQP 54
P T ++PSP PP P PP PSP +P +P+P QP
Sbjct: 310 PYTPTPPKTPSPTSQPPHTPTPPNTPSPISQPPYTPTPPKTPSPTNQP 453
Score = 35.4 bits (80), Expect = 0.012
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 10 PVRTTGVQSPSP---PPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVT 57
P T ++PSP PP P+PP PSP +P ++P+P QP T
Sbjct: 166 PYTPTPPKTPSPTSQPPYIPLPPKTPSPISQPPHVPTPPSTPSPISQPPYT 318
Score = 35.4 bits (80), Expect = 0.012
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 10 PVRTTGVQSPSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVTQE 59
P T ++PSP PP P PP+ S S P N+P+P + P+ T +
Sbjct: 406 PYTPTPPKTPSPTNQPPHIPSPPNSSSPTS---QPPNTPSPPKTPSPTSQ 546
Score = 35.0 bits (79), Expect = 0.016
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 17 QSPSP---PPSPPVPPPPPSPSQVGSLERSPENSPAPEQQP 54
++PSP PP+ P PP PSP+ +P +P+P QP
Sbjct: 91 KTPSPSYSPPNVPSPPKAPSPNNHPPYTPTPPKTPSPTSQP 213
Score = 34.7 bits (78), Expect = 0.021
Identities = 17/44 (38%), Positives = 22/44 (49%), Gaps = 3/44 (6%)
Frame = +1
Query: 17 QSPSP---PPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVT 57
++PSP PP P PP PSP +P +P+P QP T
Sbjct: 235 KTPSPISQPPHVPTPPSTPSPISQPPYTPTPPKTPSPTSQPPHT 366
Score = 32.7 bits (73), Expect = 0.080
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 17 QSPSP---PPSPPVPPPPPSPSQVGSLERSPENSPAPEQQP 54
++PSP PP P PP PSP+ P +P+P QP
Sbjct: 139 KAPSPNNHPPYTPTPPKTPSPTSQPPYIPLPPKTPSPISQP 261
Score = 28.9 bits (63), Expect = 1.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 18 SPSPPPSP-PVPPPP--PSPSQVGSLERSPENSPAPEQQPAVTQE 59
+P+PP +P P+ PP P+P + S P + P+P + T +
Sbjct: 364 TPTPPNTPSPISQPPYTPTPPKTPSPTNQPPHIPSPPNSSSPTSQ 498
Score = 28.1 bits (61), Expect = 2.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 13/50 (26%)
Frame = +1
Query: 19 PSPPPSPP-VPPPP------------PSPSQVGSLERSPENSPAPEQQPA 55
PSP +PP +P PP P P + S SP N P+P + P+
Sbjct: 1 PSPVYTPPSIPTPPKTPSPGNQPPHTPIPPKTPSPSYSPPNVPSPPKAPS 150
Score = 27.3 bits (59), Expect = 3.4
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +1
Query: 19 PSPPPSPPV---PPPPPSPSQVGSLERSPENSPAPEQQPA 55
PSPP +P PP P+P + S P P P + P+
Sbjct: 127 PSPPKAPSPNNHPPYTPTPPKTPSPTSQPPYIPLPPKTPS 246
>TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (29%)
Length = 576
Score = 38.5 bits (88), Expect = 0.001
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 18 SPSPPPSPPVPPPPPSPS---QVGSLERSPENSPAPEQ 52
SP PPPSP PPPP SPS SP SP P +
Sbjct: 439 SPPPPPSPLSPPPPASPSPPPTASPSAPSPSKSPTPSK 552
Score = 34.3 bits (77), Expect = 0.028
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 17 QSPSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQP 54
+SPSPPP PP P PP P+ + ++P+P + P
Sbjct: 430 KSPSPPP-PPSPLSPPPPASPSPPPTASPSAPSPSKSP 540
Score = 32.3 bits (72), Expect = 0.10
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 18 SPSPP---PSPPVPPPPPSPSQVGSLERSPENSPAP 50
S SPP P P PPPPPSP L P SP+P
Sbjct: 403 SSSPPHTLPKSPSPPPPPSP-----LSPPPPASPSP 495
Score = 28.5 bits (62), Expect = 1.5
Identities = 14/39 (35%), Positives = 19/39 (47%)
Frame = +1
Query: 9 SPVRTTGVQSPSPPPSPPVPPPPPSPSQVGSLERSPENS 47
SP+ SPSPPP+ P PS S S P+++
Sbjct: 457 SPLSPPPPASPSPPPTASPSAPSPSKSPTPSKPSPPQST 573
>BP030058
Length = 455
Score = 38.5 bits (88), Expect = 0.001
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = -1
Query: 19 PSPPPSPPVPPPPPSPS 35
PSPPP PP PPPPP PS
Sbjct: 359 PSPPPPPPSPPPPPPPS 309
Score = 35.4 bits (80), Expect = 0.012
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -1
Query: 18 SPSPPPSPPVPPPPPSP 34
SP PPP P PPPPPSP
Sbjct: 356 SPPPPPPSPPPPPPPSP 306
Score = 35.0 bits (79), Expect = 0.016
Identities = 18/41 (43%), Positives = 20/41 (47%)
Frame = -1
Query: 18 SPSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQPAVTQ 58
SP PPP P PPPP PS P SP P + P+ Q
Sbjct: 386 SPPPPPLPCPSPPPPPPSP----PPPPPPSPPPPKYPSCPQ 276
Score = 33.5 bits (75), Expect = 0.047
Identities = 14/30 (46%), Positives = 15/30 (49%)
Frame = -1
Query: 21 PPPSPPVPPPPPSPSQVGSLERSPENSPAP 50
PPP PP P PPP P S P + P P
Sbjct: 410 PPPPPPSPSPPPPPLPCPSPPPPPPSPPPP 321
>TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (Fibrillarin
2) (AtFib2), partial (85%)
Length = 1116
Score = 37.7 bits (86), Expect = 0.002
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -2
Query: 19 PSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQP 54
P PPP PP+PPPPP P +L+ P P P P
Sbjct: 206 PRPPPRPPLPPPPPLPPP-RALKGVPLPPPLPPPSP 102
Score = 30.8 bits (68), Expect = 0.31
Identities = 15/40 (37%), Positives = 18/40 (44%), Gaps = 8/40 (20%)
Frame = -2
Query: 19 PSPPPS--------PPVPPPPPSPSQVGSLERSPENSPAP 50
P PPP PP+PPP P P + L +P P P
Sbjct: 167 PLPPPRALKGVPLPPPLPPPSPLPLPLSPLPLNPPPPPRP 48
Score = 27.3 bits (59), Expect = 3.4
Identities = 14/36 (38%), Positives = 16/36 (43%)
Frame = -2
Query: 19 PSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQQP 54
P PP PP PP PP + G P P+P P
Sbjct: 197 PPRPPLPPPPPLPPPRALKGVPLPPPLPPPSPLPLP 90
Score = 26.9 bits (58), Expect = 4.4
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Frame = -2
Query: 19 PSPPPSP--------PV-PPPPPSPSQVGSLERS 43
P PPPSP P+ PPPPP P G++ S
Sbjct: 122 PLPPPSPLPLPLSPLPLNPPPPPRPLGGGTIFES 21
>TC14729 homologue to UP|Q8W590 (Q8W590) At2g32080/F22D22.17, partial (51%)
Length = 749
Score = 37.7 bits (86), Expect = 0.002
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 12 RTTGVQSPSPPPSPPVPPPPPSP 34
R++ + P PPP PP+PPPPP P
Sbjct: 322 RSSTSEPPPPPPPPPLPPPPPPP 254
Score = 35.8 bits (81), Expect = 0.009
Identities = 13/31 (41%), Positives = 17/31 (53%)
Frame = -2
Query: 14 TGVQSPSPPPSPPVPPPPPSPSQVGSLERSP 44
+ P PPP PP PPPP P + S+ +P
Sbjct: 319 SSTSEPPPPPPPPPLPPPPPPPEFPSISAAP 227
>BP058142
Length = 571
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/59 (37%), Positives = 26/59 (43%), Gaps = 14/59 (23%)
Frame = -3
Query: 18 SPSPPPSPPVPPPPPS---PSQVGSLERSPENSP-----------APEQQPAVTQEQWR 62
+PS P PP PPP S P+Q+ S SP +SP A Q PA WR
Sbjct: 524 APSSPARPPASPPPSSQSYPAQLASAAPSPPSSPRCARAASAARAAQPQHPAAAHRAWR 348
>TC8200 weakly similar to UP|Q9JGS9 (Q9JGS9) PORF2b, partial (23%)
Length = 930
Score = 37.7 bits (86), Expect = 0.002
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +3
Query: 7 LDSPVRTTGVQSPSPPPSPPVPPPPPSP 34
+D P +SPS PPSPPVPPPP P
Sbjct: 246 VDHPQSPPNRRSPSRPPSPPVPPPP*DP 329
>TC12459
Length = 797
Score = 37.4 bits (85), Expect = 0.003
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2
Query: 9 SPVRTTGVQSPSPPPSPPVPPPPPSPS 35
SP+ + + S PSPP PPPPPSPS
Sbjct: 202 SPIAVSSTTTTSVLPSPPPPPPPPSPS 122
Score = 29.3 bits (64), Expect = 0.89
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 11 VRTTGVQSPSPPPSPPVPPPPPSPS 35
V +T S P P PP PPP PS S
Sbjct: 190 VSSTTTTSVLPSPPPPPPPPSPSSS 116
>AV408970
Length = 195
Score = 37.0 bits (84), Expect = 0.004
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Frame = +2
Query: 18 SPSPPPSPPVP--------PPPPSPSQVGSLERSPENSPAPEQQPAVT 57
SP+P P PPVP PPPPSP S S + PAP P T
Sbjct: 50 SPAPSP-PPVPLSAASAPSPPPPSPPATSSSPPSAPSPPAPPPPPTTT 190
Score = 32.0 bits (71), Expect = 0.14
Identities = 15/38 (39%), Positives = 18/38 (46%), Gaps = 14/38 (36%)
Frame = +2
Query: 10 PVRTTGVQSPSPP--------------PSPPVPPPPPS 33
PV + +PSPP PSPP PPPPP+
Sbjct: 71 PVPLSAASAPSPPPPSPPATSSSPPSAPSPPAPPPPPT 184
Score = 30.8 bits (68), Expect = 0.31
Identities = 17/46 (36%), Positives = 19/46 (40%), Gaps = 9/46 (19%)
Frame = +2
Query: 18 SPSPPP---------SPPVPPPPPSPSQVGSLERSPENSPAPEQQP 54
+PSPPP SPP P PP + S S P P P P
Sbjct: 56 APSPPPVPLSAASAPSPPPPSPPATSSSPPSAPSPPAPPPPPTTTP 193
Score = 27.7 bits (60), Expect = 2.6
Identities = 13/51 (25%), Positives = 23/51 (44%)
Frame = +3
Query: 2 PHRVVLDSPVRTTGVQSPSPPPSPPVPPPPPSPSQVGSLERSPENSPAPEQ 52
P+ ++L P+ + P PPP + P PP + L P + P++
Sbjct: 36 PNSLLLPLPLHHLSLSPPPPPPRRRLHPHPPPLPPLHPLPLHPRHHLLPQR 188
>AV429304
Length = 355
Score = 37.0 bits (84), Expect = 0.004
Identities = 25/61 (40%), Positives = 29/61 (46%), Gaps = 8/61 (13%)
Frame = +3
Query: 2 PHRVVLDSPVRTTG-VQSPSPPPSPP-------VPPPPPSPSQVGSLERSPENSPAPEQQ 53
PH + P +T V SP PSPP VP PP +PS V SP N P+P Q
Sbjct: 54 PHTPYVPIPPKTPSPVYSPPNVPSPPQTPHAPYVPTPPKTPSPV----YSPPNVPSPPQT 221
Query: 54 P 54
P
Sbjct: 222 P 224
Score = 33.5 bits (75), Expect = 0.047
Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 5/41 (12%)
Frame = +3
Query: 19 PSPPPSP-----PVPPPPPSPSQVGSLERSPENSPAPEQQP 54
PSPP +P P+PP PSP SP N P+P Q P
Sbjct: 36 PSPPQTPHTPYVPIPPKTPSPVY------SPPNVPSPPQTP 140
Score = 33.5 bits (75), Expect = 0.047
Identities = 21/53 (39%), Positives = 26/53 (48%), Gaps = 4/53 (7%)
Frame = +3
Query: 2 PHRVVLDSPVRTTG-VQSPSPPPSPPV---PPPPPSPSQVGSLERSPENSPAP 50
PH + +P +T V SP PSPP P P+PS+ S SP N P P
Sbjct: 138 PHAPYVPTPPKTPSPVYSPPNVPSPPQTPHAPYVPTPSKTPSXVYSPPNVPTP 296
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,137,123
Number of Sequences: 28460
Number of extensions: 114803
Number of successful extensions: 10377
Number of sequences better than 10.0: 1061
Number of HSP's better than 10.0 without gapping: 3172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6609
length of query: 310
length of database: 4,897,600
effective HSP length: 90
effective length of query: 220
effective length of database: 2,336,200
effective search space: 513964000
effective search space used: 513964000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0371b.8