BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0371b.4
(449 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, c... 837 0.0
TC8128 homologue to UP|TBA3_ELEIN (O22349) Tubulin alpha-3 chain... 788 0.0
TC18284 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alph... 405 e-114
TC8038 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soy... 391 e-109
TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain,... 390 e-109
TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain... 389 e-109
TC8963 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (F... 288 1e-78
TC8127 homologue to UP|Q9SQ71 (Q9SQ71) Alpha-tubulin (Fragment),... 216 5e-57
TC13837 homologue to GB|BAB64211.1|15408819|AP003631 tubulin bet... 188 1e-48
BF177912 182 1e-46
TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (F... 170 5e-43
TC19128 homologue to PIR|S33512|S33512 tubulin alpha chain - Eug... 154 2e-38
TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%) 112 1e-25
TC15212 homologue to UP|TBB7_MAIZE (Q41784) Tubulin beta-7 chain... 98 2e-21
TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (F... 68 4e-21
BP037355 96 9e-21
AV407159 81 4e-16
TC15547 homologue to UP|TBB_CICAR (Q39445) Tubulin beta chain, p... 76 1e-14
TC9375 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soy... 63 9e-11
AV771708 51 3e-07
>TC7996 homologue to UP|TBA_PRUDU (P33629) Tubulin alpha chain, complete
Length = 1907
Score = 837 bits (2162), Expect = 0.0
Identities = 406/450 (90%), Positives = 430/450 (95%), Gaps = 1/450 (0%)
Frame = +2
Query: 1 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 60
MRE IS+HIGQAGIQVGN+CWELYCLEHGI PDG MPSD +VG +DAFNTFFSETG+GK
Sbjct: 224 MRECISVHIGQAGIQVGNACWELYCLEHGIGPDGQMPSDKTVGGGDDAFNTFFSETGAGK 403
Query: 61 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 120
HVPRA+FVDLEP+VIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYT+G+EIV+LCLD
Sbjct: 404 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 583
Query: 121 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
R RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFT+YPSPQVST+
Sbjct: 584 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 763
Query: 181 VVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
VVEPYNSVLSTHSLLEHTDV VLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLT
Sbjct: 764 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 943
Query: 241 SLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISIPEITSAVFEPSN 300
SLRFDGA+NVDVTEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQ+S+ EIT++ FEPS+
Sbjct: 944 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 1123
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVANIKTKRTVQFVDWCPTGFKCGINYQPP 360
MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV +IKTKRT+QFVDWCPTGFKCGINYQPP
Sbjct: 1124MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGSIKTKRTIQFVDWCPTGFKCGINYQPP 1303
Query: 361 TVVPAGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
TVVP GDLAKVQRAVCMISN+T+VAEVFSRID KFDLMYSKRAFVHWYVGEGMEEGEFSE
Sbjct: 1304TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDVKFDLMYSKRAFVHWYVGEGMEEGEFSE 1483
Query: 421 AREDLAALEKDYEEVGAE-GEEGEEDEEGY 449
AREDLAALEKDYEEVGAE GE G++D E Y
Sbjct: 1484AREDLAALEKDYEEVGAESGEGGDDDIEDY 1573
>TC8128 homologue to UP|TBA3_ELEIN (O22349) Tubulin alpha-3 chain (Alpha-3
tubulin), complete
Length = 1615
Score = 788 bits (2035), Expect = 0.0
Identities = 393/453 (86%), Positives = 418/453 (91%), Gaps = 4/453 (0%)
Frame = +3
Query: 1 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGI-SNDAFNTFFSETGSG 59
MRE+ISIHIGQAGIQVGNSCWELYCLEHGIQPDG+MPSD+S G+ ++DAFNTFFSETGSG
Sbjct: 105 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGIMPSDSSFGVVAHDAFNTFFSETGSG 284
Query: 60 KHVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCL 119
KHVPRA+FVDLEP+VIDEVR G YRQLFHPEQLISGKEDAANNFARGHYTVG+EIV+LCL
Sbjct: 285 KHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 464
Query: 120 DRTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
DR RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST
Sbjct: 465 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 644
Query: 180 AVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLT 239
AVVEPYNSVLSTHSLLEHTDV VLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+ISSLT
Sbjct: 645 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT 824
Query: 240 TSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISIPEITSAVFEPS 299
TSLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQ+S+PEIT+AVFEPS
Sbjct: 825 TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPS 1004
Query: 300 NMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVANIKTKRTVQFVDWCPTGFKCGINYQP 359
+MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVA IKTKRTVQFVDWCPTGFKCGI+YQP
Sbjct: 1005SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGIHYQP 1184
Query: 360 PTVVPAGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDLMYSKRA---FVHWYVGEGMEEG 416
P+VVP GD AKVQRAVCMI N+ AVAEVFSR+D +FDL V W G G G
Sbjct: 1185PSVVPGGDPAKVQRAVCMIRNHPAVAEVFSRLDPQFDLTVCPEGPCPLVCW-*GYG-RRG 1358
Query: 417 EFSEAREDLAALEKDYEEVGAEGEEGEEDEEGY 449
++AREDLAALEKDYEEVGAEG + EE+ E Y
Sbjct: 1359VLTKAREDLAALEKDYEEVGAEGADDEEEGEDY 1457
>TC18284 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alpha-5 chain,
partial (44%)
Length = 739
Score = 405 bits (1042), Expect = e-114
Identities = 199/199 (100%), Positives = 199/199 (100%)
Frame = +3
Query: 1 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 60
MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK
Sbjct: 141 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 320
Query: 61 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 120
HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD
Sbjct: 321 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 500
Query: 121 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA
Sbjct: 501 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 680
Query: 181 VVEPYNSVLSTHSLLEHTD 199
VVEPYNSVLSTHSLLEHTD
Sbjct: 681 VVEPYNSVLSTHSLLEHTD 737
>TC8038 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soybean
{Glycine max;} , complete
Length = 1685
Score = 391 bits (1004), Expect = e-109
Identities = 185/452 (40%), Positives = 286/452 (62%), Gaps = 3/452 (0%)
Frame = +1
Query: 1 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 60
MRE++ I GQ G Q+G WE+ C EHGI G D+ + + + N +++E G+
Sbjct: 112 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDHTGKYGGDSELQL--ERINVYYNEASCGR 285
Query: 61 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 120
VPRA+ +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E+++ LD
Sbjct: 286 FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 465
Query: 121 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
RK A+NC LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+++PSP+VS
Sbjct: 466 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 645
Query: 181 VVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + P++ +LN LIS +S +T
Sbjct: 646 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 825
Query: 241 SLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISIPEITSAVFEPSN 300
LRF G +N D+ + NL+P+PR+HF + +AP+ S + +S+PE+T +++ N
Sbjct: 826 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALSVPELTQQMWDSKN 1005
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVANIKTKRTVQFVDWCPTGFKCGINYQPP 360
MM DPRHG+Y+ M+RG + K+V+ + N++ K + FV+W P K + PP
Sbjct: 1006MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPP 1185
Query: 361 TVVPAGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
T ++ A I N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 1186T--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTE 1341
Query: 421 AR---EDLAALEKDYEEVGAEGEEGEEDEEGY 449
A DL + + Y + A+ +E EE+E Y
Sbjct: 1342AESNMNDLVSEYQQYPDATADEDEYEEEEGEY 1437
>TC8723 homologue to UP|TBB1_LUPAL (P37392) Tubulin beta-1 chain, complete
Length = 1689
Score = 390 bits (1002), Expect = e-109
Identities = 181/449 (40%), Positives = 285/449 (63%)
Frame = +1
Query: 1 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 60
MRE++ I GQ G Q+G WE+ C EHGI G +T + + + N +++E G+
Sbjct: 115 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQL--ERVNVYYNEASCGR 288
Query: 61 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 120
VPRA+ +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E+++ LD
Sbjct: 289 FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 468
Query: 121 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
RK A+NC LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+++PSP+VS
Sbjct: 469 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 648
Query: 181 VVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + P++ +LN LIS +S +T
Sbjct: 649 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 828
Query: 241 SLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISIPEITSAVFEPSN 300
LRF G +N D+ + NL+P+PR+HF + +AP+ S + +++PE+T +++ N
Sbjct: 829 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 1008
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVANIKTKRTVQFVDWCPTGFKCGINYQPP 360
MM DPRHG+Y+ M+RG + K+V+ + N++ K + FV+W P K + PP
Sbjct: 1009MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP 1188
Query: 361 TVVPAGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
T ++ A I N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 1189T--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTE 1344
Query: 421 AREDLAALEKDYEEVGAEGEEGEEDEEGY 449
A ++ L +Y++ ++ D+EGY
Sbjct: 1345AESNMNDLVSEYQQY----QDATADDEGY 1419
>TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain (Beta-3
tubulin), complete
Length = 2208
Score = 389 bits (999), Expect = e-109
Identities = 177/453 (39%), Positives = 288/453 (63%), Gaps = 4/453 (0%)
Frame = +3
Query: 1 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 60
MRE++ + GQ G Q+G WE+ C EHGI G ++ + + + N +++E G+
Sbjct: 66 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDQSGSYVGNSHLQL--ERVNVYYNEASGGR 239
Query: 61 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 120
+VPRA+ +DLEP +D +R+G Y ++F P+ + G+ A NN+A+GHYT G E+++ LD
Sbjct: 240 YVPRAVLMDLEPGTMDSLRSGPYGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLD 419
Query: 121 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
RK A+NC LQGF + +++GGGTGSG+G+LL+ ++ +Y + + F+++PSP+VS
Sbjct: 420 VVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 599
Query: 181 VVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + P++ +LN LIS +S +T
Sbjct: 600 VVEPYNATLSIHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTC 779
Query: 241 SLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISIPEITSAVFEPSN 300
LRF G +N D+ + NL+P+PR+HF + +AP+ S + ++IPE+T +++ N
Sbjct: 780 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSSLTIPELTQQMWDARN 959
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVANIKTKRTVQFVDWCPTGFKCGINYQPP 360
MM DPRHG+Y+ M+RG + K+V+ + N++ K + FV+W P K + PP
Sbjct: 960 MMCAADPRHGRYLTASAMFRGKMSTKEVDQQMINVQNKNSSYFVEWIPNNVKSSVCDIPP 1139
Query: 361 TVVPAGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
T + + I N+T++ E+F R+ +F +M+ ++AF+HWY EGM+E EF+E
Sbjct: 1140T--------GLSMSSTFIGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTAEGMDEMEFTE 1295
Query: 421 AREDLAALEKDYEE----VGAEGEEGEEDEEGY 449
A ++ L +Y++ E EEG+E+EE +
Sbjct: 1296AESNMNDLVAEYQQYQDATAVEEEEGDEEEEEF 1394
>TC8963 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (Fragment),
partial (75%)
Length = 985
Score = 288 bits (738), Expect = 1e-78
Identities = 131/306 (42%), Positives = 202/306 (65%)
Frame = +3
Query: 1 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 60
MRE++ I GQ G Q+G WE+ C EHGI G D + + + N +++E G+
Sbjct: 72 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQL--ERINVYYNEATGGR 245
Query: 61 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 120
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+++ LD
Sbjct: 246 YVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 425
Query: 121 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
RK A+NC LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+++PSP+VS
Sbjct: 426 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 605
Query: 181 VVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTT 240
VVEPYN+ LS H L+E+ D ++LDNEA+YDIC R+L + PT+ +LN L+S +S +T
Sbjct: 606 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLMSATMSGVTC 785
Query: 241 SLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISIPEITSAVFEPSN 300
LRF G +N D+ + NL+P+PR+HF + +AP+ S + +++PE+T +++ N
Sbjct: 786 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKN 965
Query: 301 MMAKCD 306
MM D
Sbjct: 966 MMCAAD 983
>TC8127 homologue to UP|Q9SQ71 (Q9SQ71) Alpha-tubulin (Fragment), partial
(89%)
Length = 597
Score = 216 bits (551), Expect = 5e-57
Identities = 102/112 (91%), Positives = 107/112 (95%)
Frame = +2
Query: 338 KRTVQFVDWCPTGFKCGINYQPPTVVPAGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDL 397
KRTVQFVDWCPTGFKCGINYQPP+VVP GDLAKVQRAVCMISNNTAVAEVFSRID+KFDL
Sbjct: 2 KRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDL 181
Query: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGEEGEEDEEGY 449
MY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEG + EE+ E Y
Sbjct: 182 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEEEGEDY 337
>TC13837 homologue to GB|BAB64211.1|15408819|AP003631 tubulin beta-4 chain
{Oryza sativa (japonica cultivar-group);}, partial (42%)
Length = 627
Score = 188 bits (478), Expect = 1e-48
Identities = 86/190 (45%), Positives = 129/190 (67%)
Frame = +1
Query: 1 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 60
MRE++ I GQ G Q+G+ WE+ C EHG+ P G ++ + + + N +++E G+
Sbjct: 61 MREILHIQGGQCGNQIGSKFWEVVCDEHGLDPTGRYVGNSDLQL--ERVNVYYNEASCGR 234
Query: 61 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 120
VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+++ LD
Sbjct: 235 FVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 414
Query: 121 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
RK A+NC LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+++PSP+VS
Sbjct: 415 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 594
Query: 181 VVEPYNSVLS 190
VVEPYN+ LS
Sbjct: 595 VVEPYNATLS 624
>BF177912
Length = 391
Score = 182 bits (461), Expect = 1e-46
Identities = 85/97 (87%), Positives = 91/97 (93%)
Frame = +3
Query: 1 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 60
MRE ISIHIGQAGIQVGN+CWELYCLEHGIQPDG MPSD +VG +DAFNTFFSETG+GK
Sbjct: 99 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 278
Query: 61 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKE 97
HVPRA+FVDLEP+VIDEVRTG YRQLFHPEQLISGKE
Sbjct: 279 HVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKE 389
>TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (Fragment),
partial (44%)
Length = 600
Score = 170 bits (430), Expect = 5e-43
Identities = 78/181 (43%), Positives = 119/181 (65%)
Frame = +1
Query: 1 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTSVGISNDAFNTFFSETGSGK 60
MRE++ I GQ G Q+G WE+ C EHGI G D+ + + + N +++E G+
Sbjct: 64 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQL--ERINVYYNEASGGR 237
Query: 61 HVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYTVGREIVELCLD 120
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+++ LD
Sbjct: 238 YVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 417
Query: 121 RTRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
RK A+NC LQGF V +++GGGTGSG+G+LL+ ++ +Y + L F+++PSP VS
Sbjct: 418 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPXVSDT 597
Query: 181 V 181
V
Sbjct: 598 V 600
>TC19128 homologue to PIR|S33512|S33512 tubulin alpha chain - Euglena
gracilis {Euglena gracilis;} , partial (16%)
Length = 494
Score = 154 bits (390), Expect = 2e-38
Identities = 74/74 (100%), Positives = 74/74 (100%)
Frame = +3
Query: 376 CMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
CMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV
Sbjct: 3 CMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 182
Query: 436 GAEGEEGEEDEEGY 449
GAEGEEGEEDEEGY
Sbjct: 183 GAEGEEGEEDEEGY 224
>TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%)
Length = 591
Score = 112 bits (281), Expect = 1e-25
Identities = 53/145 (36%), Positives = 83/145 (56%)
Frame = +3
Query: 305 CDPRHGKYMACCLMYRGDVVPKDVNAAVANIKTKRTVQFVDWCPTGFKCGINYQPPTVVP 364
CDPR+G+Y+ +RG V K+V + I+TK + QF+DW P K + V P
Sbjct: 6 CDPRNGRYLTASAYFRGKVSTKEVEEQMDAIQTKNSGQFIDWIPNAIKASVC----DVAP 173
Query: 365 AGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEARED 424
G+ + I N+TA+ ++F R+ F M+ ++AF+HWY GEGM+E EF+EA +
Sbjct: 174 TGETM----SAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWYTGEGMDEMEFTEAESN 341
Query: 425 LAALEKDYEEVGAEGEEGEEDEEGY 449
+ L + ++ A EGEE+E+ Y
Sbjct: 342 MNDLVSELQQYEAASVEGEEEEDEY 416
>TC15212 homologue to UP|TBB7_MAIZE (Q41784) Tubulin beta-7 chain (Beta-7
tubulin), partial (30%)
Length = 659
Score = 98.2 bits (243), Expect = 2e-21
Identities = 49/140 (35%), Positives = 80/140 (57%), Gaps = 3/140 (2%)
Frame = +3
Query: 311 KYMACCLMYRGDVVPKDVNAAVANIKTKRTVQFVDWCPTGFKCGINYQPPTVVPAGDLAK 370
+Y+ M+RG + K+V+ + N++ K + FV+W P K + PP
Sbjct: 3 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------G 158
Query: 371 VQRAVCMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAA 427
++ A I N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA DL A
Sbjct: 159 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVA 338
Query: 428 LEKDYEEVGAEGEEGEEDEE 447
+ Y++ A+ EE EE+EE
Sbjct: 339 EYQQYQDATADDEEYEEEEE 398
>TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (Fragment),
partial (34%)
Length = 797
Score = 67.8 bits (164), Expect(2) = 4e-21
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Frame = +2
Query: 374 AVCMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALEK 430
A I N+T++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA DL + +
Sbjct: 209 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 388
Query: 431 DYEEVGAEGEEGEEDEE 447
Y++ AE + EDEE
Sbjct: 389 QYQDATAEDDGEYEDEE 439
Score = 50.4 bits (119), Expect(2) = 4e-21
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 302 MAKCDPRHGKYMACCLMYRGDVVPKDVNAAVANIKTKRTVQFVDWCPTGFKCGI 355
M DPRHG+Y+ M+RG + K+V+ + N++ K + FV+W P K +
Sbjct: 16 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV 177
>BP037355
Length = 422
Score = 96.3 bits (238), Expect = 9e-21
Identities = 46/55 (83%), Positives = 49/55 (88%)
Frame = +2
Query: 55 ETGSGKHVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISGKEDAANNFARGHYT 109
ETGSGKHVPRA+FVDLEP+VI+EV G YRQLFHPEQLISGKEDAANN A GH T
Sbjct: 167 ETGSGKHVPRAVFVDLEPTVINEVCAGTYRQLFHPEQLISGKEDAANNLAGGHCT 331
>AV407159
Length = 301
Score = 80.9 bits (198), Expect = 4e-16
Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Frame = +3
Query: 1 MREVISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMP-SDTSVGISNDAFNTFFSETGSG 59
MRE++ I GQ G Q+G+ WE+ C EHGI G +D+ + N +++E +G
Sbjct: 12 MREILHIQGGQCGNQIGSKWWEVICDEHGIDHTGKFTGTDSDTDFQLERINVYYNEASAG 191
Query: 60 KHVPRALFVDLEPSVIDEVRTGEYRQLFHPEQLISG 95
++VPRA+ +DLEP ++ +R+G Y ++ P+ ++ G
Sbjct: 192 RYVPRAVLMDLEPGTMESIRSGPYGKIVRPDNVVFG 299
>TC15547 homologue to UP|TBB_CICAR (Q39445) Tubulin beta chain, partial
(27%)
Length = 673
Score = 75.9 bits (185), Expect = 1e-14
Identities = 38/114 (33%), Positives = 64/114 (55%), Gaps = 1/114 (0%)
Frame = +2
Query: 336 KTKRTVQFVDWCPTGFKCGINYQPPTVVPAGDLAKVQRAVCMISNNTAVAEVFSRIDYKF 395
+T+ FV+W P K + PP ++ + I N+T++ E+F R+ +F
Sbjct: 26 RTRIPRNFVEWIPNNVKSSVCDIPPK--------NLKMSSTFIGNSTSIQEMFRRVSEQF 181
Query: 396 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV-GAEGEEGEEDEEG 448
MY ++AF+HWY GEGM+E EF+EA ++ L +Y++ A +E E+ +EG
Sbjct: 182 TAMYRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEDYDEG 343
>TC9375 homologue to PIR|JA0049|JA0049 Tubulin beta-2 chain - soybean
{Glycine max;} , partial (15%)
Length = 699
Score = 63.2 bits (152), Expect = 9e-11
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Frame = +2
Query: 386 EVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGAEGEEG 442
E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA DL A + Y++ A+ +E
Sbjct: 2 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEY 181
Query: 443 EEDEE 447
EE+EE
Sbjct: 182 EEEEE 196
>AV771708
Length = 261
Score = 51.2 bits (121), Expect = 3e-07
Identities = 28/41 (68%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Frame = -2
Query: 410 GEGMEEGEFSEAREDLAALEKDYEEVGAE-GEEGEEDEEGY 449
GEGMEEGEF ARED AA K+ EEVGAE GE G+ D E Y
Sbjct: 260 GEGMEEGEFFGAREDFAAFAKE*EEVGAESGEGGDGDIEDY 138
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,232,252
Number of Sequences: 28460
Number of extensions: 95263
Number of successful extensions: 546
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of query: 449
length of database: 4,897,600
effective HSP length: 93
effective length of query: 356
effective length of database: 2,250,820
effective search space: 801291920
effective search space used: 801291920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0371b.4