BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0370.9
(642 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 41 7e-04
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 40 0.001
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 37 0.013
AV411437 35 0.049
TC14083 similar to UP|CRTC_RICCO (P93508) Calreticulin precursor... 33 0.11
TC13221 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protein... 33 0.11
TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 gluc... 33 0.11
TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Ara... 33 0.11
TC16286 similar to UP|Q8GTP6 (Q8GTP6) Endo-1,4-beta-D-glucanase ... 33 0.11
TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associ... 33 0.11
BP034655 33 0.14
BP043430 33 0.14
BP036655 33 0.18
AV773558 32 0.24
TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization s... 32 0.24
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 32 0.24
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 32 0.32
TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete 32 0.32
BI419972 32 0.32
AU089175 32 0.41
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 40.8 bits (94), Expect = 7e-04
Identities = 22/48 (45%), Positives = 30/48 (61%)
Frame = +2
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSES 639
DDE D +DED + D +EEDDD DDD +EEGE + + S S++
Sbjct: 779 DDEDGDEDEDEDDDDDEEEEDDD----DDDEDDEEGEGKSKSKSGSKA 910
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/93 (27%), Positives = 49/93 (51%), Gaps = 3/93 (3%)
Frame = +2
Query: 553 DDILAELKEISK---TLQATIQASKVRKHNVDQLIKMLAAPADDEVSDPADDEDAEADLD 609
DD + EL+ + + + +TI+ K+ H V +++ + DDED + D D
Sbjct: 638 DDAVEELQNLMEHDYDIGSTIR-DKIIPHAVSWFTGEAEQSDFEDIEE--DDEDGDEDED 808
Query: 610 EEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
E+DDD+ +DD+ ++E + + S S+S S+
Sbjct: 809 EDDDDDEEEEDDDDDDEDDEEGEGKSKSKSGSK 907
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 40.0 bits (92), Expect = 0.001
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +3
Query: 590 PADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
P + + DD++ E D DE+DDD+ DDD EEE + D D E SE
Sbjct: 234 PVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDD---DDDDEEEEGSE 383
Score = 38.1 bits (87), Expect = 0.004
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDAD 634
DDE D DD+D + D +EE+DD DDD+ EEEG + +
Sbjct: 282 DDEDEDDDDDDDDDDDGEEEEDD----DDDDEEEEGSEEVEVE 398
Score = 36.2 bits (82), Expect = 0.017
Identities = 15/37 (40%), Positives = 23/37 (61%)
Frame = +3
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGE 628
+D+ D DD+D E + D++DDDE + VE EG+
Sbjct: 294 EDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEVEGK 404
Score = 35.4 bits (80), Expect = 0.028
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 590 PADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
P + + +++D E + DE++DD+ DDD+ EE E D D E + E
Sbjct: 228 PKPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEE 386
Score = 30.0 bits (66), Expect = 1.2
Identities = 12/51 (23%), Positives = 25/51 (48%)
Frame = +3
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
D E+ + + D +EE+DD+ DD++ +++ + D D E +
Sbjct: 201 DPEIYPDGPPKPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDD 353
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 36.6 bits (83), Expect = 0.013
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSE 638
D++ D DD+D + D DEEDD +++ VEEE + D E
Sbjct: 419 DEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEEDE 279
Score = 33.9 bits (76), Expect = 0.083
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
+DE + +D++ + D DE+DD+E DD +EE E + D+ E E
Sbjct: 431 EDEEDEDGEDQEDDDDDDEDDDEE---DDGGEDEEEEGVEEEDNEDEEEDE 288
Score = 33.9 bits (76), Expect = 0.083
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 588 AAPADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
A +E + +DED E D++DDDE DD+ E++G + + E +E
Sbjct: 458 AGAGPEENGEDEEDEDGEDQEDDDDDDE----DDDEEDDGGEDEEEEGVEEEDNE 306
Score = 28.5 bits (62), Expect = 3.5
Identities = 14/54 (25%), Positives = 25/54 (45%)
Frame = -2
Query: 589 APADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
AP + +E+ E + DE+ +D+ DDD+ +++ E D E E
Sbjct: 479 APEGGPGAGAGPEENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEE 318
Score = 27.7 bits (60), Expect = 5.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVE 624
DDE D +DE+ E ++EED+++ D+++ E
Sbjct: 371 DDEEDDGGEDEEEEG-VEEEDNEDEEEDEEDEE 276
>AV411437
Length = 417
Score = 34.7 bits (78), Expect = 0.049
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 589 APADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTS 641
A ++E + +++ + +L++ DDDE S+DD +E EG + STS
Sbjct: 53 AEEEEEEEEEEEEDGVDGELEQFDDDETDSEDDELETEGGGELEDAQVGGSTS 211
>TC14083 similar to UP|CRTC_RICCO (P93508) Calreticulin precursor, partial
(92%)
Length = 1693
Score = 33.5 bits (75), Expect = 0.11
Identities = 20/47 (42%), Positives = 26/47 (54%)
Frame = +1
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSE 638
++ DPAD DAE DEED DEA D D+ E + E D+ +E
Sbjct: 1222 EESKEDPADS-DAE---DEEDTDEASHDSDDAESKTEAGEDSADANE 1350
>TC13221 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protein, partial
(15%)
Length = 521
Score = 33.5 bits (75), Expect = 0.11
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +3
Query: 592 DDEVSDPADDEDAEADLDEEDDDE-----ALSDDDNVEEE 626
DDE+ D D ED+E DE+ D E +L DDD ++ E
Sbjct: 183 DDEMQDSEDGEDSEGSEDEDQDGEDPEEASLEDDDELD*E 302
>TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 glucosidase
SCW10 precursor (Soluble cell wall protein 10) ,
partial (6%)
Length = 1209
Score = 33.5 bits (75), Expect = 0.11
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 582 QLIKMLAAPADDE--VSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSES 639
QL K+ AP+ + S DD+D + D D++DDD+ DDD+ ++ + +D + +
Sbjct: 23 QLTKINTAPSGFKRLFSPKPDDDDDDDDDDDDDDDDDDDDDDDDGDKKQPDSDTGTALKG 202
Query: 640 T 640
T
Sbjct: 203 T 205
>TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (75%)
Length = 1083
Score = 33.5 bits (75), Expect = 0.11
Identities = 21/62 (33%), Positives = 36/62 (57%), Gaps = 3/62 (4%)
Frame = +3
Query: 584 IKMLAAPADDE---VSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSEST 640
+K P +D+ V D DD+ EAD DE++DD+ D+D+ +E+G ++ + +S
Sbjct: 177 LKKKPQPQEDDAPIVEDVKDDDKDEADDDEDEDDD---DEDDDKEDGAL-GGSEGSKQSR 344
Query: 641 SE 642
SE
Sbjct: 345 SE 350
Score = 27.7 bits (60), Expect = 5.9
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 554 DILAELKEISKTLQATIQASKVRKHNVDQLIKMLAAPADDEVSDPADDEDAEADLDEEDD 613
D +E + + + L A K + + ++ DD+ + DDED E D DE+DD
Sbjct: 120 DASSEAEALEQVLSAEETTLKKKPQPQEDDAPIVEDVKDDDKDEADDDED-EDDDDEDDD 296
Query: 614 DE 615
E
Sbjct: 297 KE 302
>TC16286 similar to UP|Q8GTP6 (Q8GTP6) Endo-1,4-beta-D-glucanase , partial
(47%)
Length = 1076
Score = 33.5 bits (75), Expect = 0.11
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +3
Query: 34 STRVTRSSSGIAAQSSSPGHSPTPKKMRTK-QVVTKKKT-LRFSPPQDTSPIS-ESDTEN 90
S+ RSSSG +A SSSP SP +K + T T LR + +S S N
Sbjct: 381 SSSAVRSSSGPSAPSSSPPSSPDSLLSSSKLSLATITSTLLRITTHLLFIRLSCSSMRRN 560
Query: 91 VADIPDLDIVHAEDLLDLASARVSEPPVQSNV 122
+ + P + + H LL RV P+QS +
Sbjct: 561 LGNFPSITMFHGGGLLGCKMGRVMVSPLQSRI 656
>TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associated
complex alpha chain, partial (58%)
Length = 600
Score = 33.5 bits (75), Expect = 0.11
Identities = 25/81 (30%), Positives = 41/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 561 EISKTLQATIQASKVRKHNVDQLIKMLAAPADDEVSDPADDEDAEADLDEEDDDEALSDD 620
EIS T +++ + + ++L+ +P ++D E D D+EDDD+ DD
Sbjct: 17 EISSVCTGTHRSTAMTAQSQEELLAAHLEQQKIHDDEPVVEDDDEDD-DDEDDDD--EDD 187
Query: 621 DNVE-EEGEYPTDADSTSEST 640
DN+E +EG DA S+ T
Sbjct: 188 DNIEGQEG----DASGRSKQT 238
>BP034655
Length = 517
Score = 33.1 bits (74), Expect = 0.14
Identities = 24/73 (32%), Positives = 37/73 (49%)
Frame = +1
Query: 566 LQATIQASKVRKHNVDQLIKMLAAPADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEE 625
L AT AS H + L A AD +SD DDE+ E + +EE+++E +++ EE
Sbjct: 46 LFATPMASPSEFHRNEIAAAHLTA-ADFGLSD--DDEEEEEEEEEEEEEEEEEEEEEEEE 216
Query: 626 EGEYPTDADSTSE 638
E E + D +
Sbjct: 217 EDEEDDEEDEDED 255
Score = 27.7 bits (60), Expect = 5.9
Identities = 15/56 (26%), Positives = 26/56 (45%)
Frame = +1
Query: 587 LAAPADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
+A+P++ ++ A AD DDDE +++ EEE E + + E E
Sbjct: 61 MASPSEFHRNEIAAAHLTAADFGLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEE 228
>BP043430
Length = 493
Score = 33.1 bits (74), Expect = 0.14
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -1
Query: 600 DDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
DDE + ++DEED++E S+DD+ E E D + S+ T +
Sbjct: 349 DDEGNDNEVDEEDEEEEDSNDDDDGSESEEFNDDEEDSD*TQQ 221
Score = 28.1 bits (61), Expect = 4.5
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 592 DDEVSDPADDEDAEADLDEEDDDE-ALSDDDNVEEE 626
DDE +D DE+ E + D DDD+ + S++ N +EE
Sbjct: 349 DDEGNDNEVDEEDEEEEDSNDDDDGSESEEFNDDEE 242
>BP036655
Length = 556
Score = 32.7 bits (73), Expect = 0.18
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -3
Query: 591 ADDEVSDPADDEDAEADLDEEDDDEALSD--DDNVEEEGEYPTDADSTSESTSE 642
+DD D DE+ E + DDD+ D DD VEEE E + + E E
Sbjct: 395 SDDGDDDEVVDEEEEVVEEWSDDDDINDDESDDEVEEESETEIETEKEEEEEEE 234
>AV773558
Length = 469
Score = 32.3 bits (72), Expect = 0.24
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -2
Query: 592 DDEVSDP---ADDEDAEADLDEEDDDEALSDDDNVEEEGEY 629
D+E+ D ED + D D++DDD+ +DD++ EE G Y
Sbjct: 405 DEELDDDFVLVYSEDDDDDDDDDDDDDDYTDDEDEEEGGFY 283
>TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization sequence
binding protein (P67), partial (6%)
Length = 590
Score = 32.3 bits (72), Expect = 0.24
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Frame = +1
Query: 539 PSASGTKGVTSTGKDDILAELKEISKTLQATIQASKVRKHNVDQLIKMLAAPA---DDEV 595
P A +K T + D+ L+ S+ Q Q ++ ++ ++ +A PA DDEV
Sbjct: 49 PXARPSK--TQSSSDESLSNSSSSSEEEQ---QIEQINDEEDEEELEAVARPASSGDDEV 213
Query: 596 SD---PADDEDAEADLDEEDDDEALSDD 620
++ P DED A D +DDD+ D
Sbjct: 214 AEDIPPDSDEDPAAAEDADDDDDEQGGD 297
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 32.3 bits (72), Expect = 0.24
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 13/50 (26%)
Frame = +2
Query: 592 DDEVSDPADDEDAEADLDEE-------------DDDEALSDDDNVEEEGE 628
DD+ DD+D E D +EE DDD+ DDD+ EEE E
Sbjct: 77 DDDAPGGGDDDDDEEDEEEEGGVEGGRGGGGDPDDDDDDDDDDDEEEEEE 226
Score = 30.8 bits (68), Expect = 0.70
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = +2
Query: 597 DPADDEDAEADLDEEDDDEALSDDDNVEEEGE 628
D D ED + D D++DD DDD+ EE+ E
Sbjct: 35 DDDDGEDDDGDEDDDDDAPGGGDDDDDEEDEE 130
Score = 30.8 bits (68), Expect = 0.70
Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 3/54 (5%)
Frame = +2
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVE---EEGEYPTDADSTSESTSE 642
+D+ D DD+DA D++DD+E ++ VE G P D D + E
Sbjct: 50 EDDDGDEDDDDDAPGGGDDDDDEEDEEEEGGVEGGRGGGGDPDDDDDDDDDDDE 211
Score = 30.0 bits (66), Expect = 1.2
Identities = 16/37 (43%), Positives = 20/37 (53%), Gaps = 5/37 (13%)
Frame = +2
Query: 597 DPADDEDAEADLDEEDDDEAL-----SDDDNVEEEGE 628
D DD+D E D +EDDD+ DDD +EE E
Sbjct: 26 DEDDDDDGEDDDGDEDDDDDAPGGGDDDDDEEDEEEE 136
Score = 28.9 bits (63), Expect = 2.7
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 12/51 (23%)
Frame = +2
Query: 590 PADDEVSDPADDEDAEADLD------------EEDDDEALSDDDNVEEEGE 628
P DD+ D DDE+ E + D +D+EA SD + E+EG+
Sbjct: 173 PDDDDDDDDDDDEEEEEEEDLGTEYLVRRTVAAAEDEEASSDFEPEEDEGD 325
Score = 28.5 bits (62), Expect = 3.5
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 599 ADDEDAEADLDEEDDDEALSDDDNVEEEG----EYPTDADSTSESTSE 642
A+DE+A +D + E+D+ +D+D+ E+ G +D D + + S+
Sbjct: 272 AEDEEASSDFEPEEDEGDDNDNDDGEKAGVPSKRKRSDKDGSGDDDSD 415
Score = 27.7 bits (60), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 609 DEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
DE+DDD+ DD + +++ + P D + E
Sbjct: 26 DEDDDDDGEDDDGDEDDDDDAPGGGDDDDDEEDE 127
>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (40%)
Length = 620
Score = 32.0 bits (71), Expect = 0.32
Identities = 18/43 (41%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Frame = +3
Query: 600 DDEDAEADLDEEDD--DEALSDDDNVEEEGEYPTDADSTSEST 640
D+ED D D+EDD DE + D D+ +E +D+D T E T
Sbjct: 3 DEEDDSDDEDDEDDDSDEEMDDADSDSDE----SDSDDTDEET 119
Score = 28.9 bits (63), Expect = 2.7
Identities = 18/37 (48%), Positives = 23/37 (61%), Gaps = 3/37 (8%)
Frame = +3
Query: 609 DEEDD--DEALSDDDNVEEEGEYPTDAD-STSESTSE 642
DEEDD DE DDD+ EE + +D+D S S+ T E
Sbjct: 3 DEEDDSDDEDDEDDDSDEEMDDADSDSDESDSDDTDE 113
>TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete
Length = 1064
Score = 32.0 bits (71), Expect = 0.32
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 577 KHNVDQLIKMLAAPADDEVSDPADDEDAEADLDEEDDDEAL 617
K +V+ I + ADD + DE+++ D D+EDD EAL
Sbjct: 438 KRDVEDHIVARSVDADDSDVEVKSDEESDDDDDDEDDTEAL 560
Score = 28.5 bits (62), Expect = 3.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 599 ADDEDAEADLDEEDDDEALSDDD 621
ADD D E DEE DD+ +DD
Sbjct: 480 ADDSDVEVKSDEESDDDDDDEDD 548
>BI419972
Length = 498
Score = 32.0 bits (71), Expect = 0.32
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 573 SKVRKHNVDQLIKMLAAPADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGE 628
SK + +++ L+ A ++ S+ DDED + + D+ DDD+ +D +EGE
Sbjct: 277 SKDGRFSLEDLLGRKPAYLANKDSETEDDEDGDDEDDDADDDDDDEGEDYSGDEGE 444
Score = 27.7 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTD 632
DDE D DD+D E + D+ E +D+ E G +D
Sbjct: 373 DDEDDDADDDDDDEGEDYSGDEGEEADPEDDPEANGAGGSD 495
>AU089175
Length = 460
Score = 31.6 bits (70), Expect = 0.41
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Frame = +1
Query: 460 MMDFGQHVFEHTFKHVGSYAVKLSIM-------FPCLITELILQQHPSIL 502
MM F QH FE K + + LS M F L+ LI+Q HPSIL
Sbjct: 130 MMIFFQHFFESKIKMSSTQTLTLSGMHHASDRTFTILLYLLIIQSHPSIL 279
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.128 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,250,009
Number of Sequences: 28460
Number of extensions: 124012
Number of successful extensions: 1324
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of query: 642
length of database: 4,897,600
effective HSP length: 96
effective length of query: 546
effective length of database: 2,165,440
effective search space: 1182330240
effective search space used: 1182330240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0370.9