BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0369c.6
(143 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14311 homologue to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein... 259 2e-70
TC14307 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 239 2e-64
TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 238 2e-64
TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 238 4e-64
TC14310 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (92%) 209 1e-55
AI967840 179 2e-46
AU251825 149 1e-37
AV415208 103 9e-24
BP037334 88 5e-19
BI418928 37 0.002
TC8736 similar to PIR|T06396|T06396 isoprenylated protein - soyb... 33 0.024
TC10919 similar to UP|SRS1_ORYSA (P83649) Salt-stress root prote... 32 0.054
TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, ... 30 0.12
TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacety... 30 0.21
TC15487 similar to UP|O23144 (O23144) Proton pump interactor (AT... 30 0.21
BP049555 30 0.21
TC17612 30 0.21
TC19835 similar to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Fragmen... 29 0.27
TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like prot... 28 0.46
TC9175 weakly similar to UP|INAD_DROME (Q24008) Inactivation-no-... 28 0.60
>TC14311 homologue to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein, partial
(97%)
Length = 626
Score = 259 bits (661), Expect = 2e-70
Identities = 135/143 (94%), Positives = 140/143 (97%)
Frame = +1
Query: 1 MAKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYI 60
MA+ DKKPAEKKPAAAEEKAAAAEKKPRAEKKIP KEG AAGDKKKKRSKKNVETYKIYI
Sbjct: 43 MARADKKPAEKKPAAAEEKAAAAEKKPRAEKKIP-KEGAAAGDKKKKRSKKNVETYKIYI 219
Query: 61 FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 120
FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYN+KPTITSREIQTAVRLV
Sbjct: 220 FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNQKPTITSREIQTAVRLV 399
Query: 121 LPGELAKHAVSEGTKAVTKFTSS 143
LPGELA+HAVSEGT+AVT+FTSS
Sbjct: 400 LPGELAQHAVSEGTQAVTQFTSS 468
>TC14307 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (90%)
Length = 701
Score = 239 bits (609), Expect = 2e-64
Identities = 123/141 (87%), Positives = 129/141 (91%)
Frame = +2
Query: 3 KGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFK 62
K DKKPAE+K + EKA AEKKP+A KK+P + AAGDKKKKRSKK+VETYKIYIFK
Sbjct: 89 KADKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSVETYKIYIFK 268
Query: 63 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 122
VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP
Sbjct: 269 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 448
Query: 123 GELAKHAVSEGTKAVTKFTSS 143
GELAKHAVSEGTKAVTKFTSS
Sbjct: 449 GELAKHAVSEGTKAVTKFTSS 511
>TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (96%)
Length = 764
Score = 238 bits (608), Expect = 2e-64
Identities = 126/146 (86%), Positives = 131/146 (89%), Gaps = 5/146 (3%)
Frame = +3
Query: 3 KGDKKPAEKKPAAAE-----EKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYK 57
K DKKPAEKKPA + EKA AEKKP+A KK+P + AAGDKKKKRSKK+VETYK
Sbjct: 84 KADKKPAEKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSVETYK 263
Query: 58 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 117
IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV
Sbjct: 264 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 443
Query: 118 RLVLPGELAKHAVSEGTKAVTKFTSS 143
RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 444 RLVLPGELAKHAVSEGTKAVTKFTSS 521
>TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (93%)
Length = 682
Score = 238 bits (606), Expect = 4e-64
Identities = 122/139 (87%), Positives = 129/139 (92%)
Frame = +1
Query: 5 DKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFKVL 64
+KKPAE+K + A EKA AEKKP+A KK+P + AAGDKKKKRSKKNVETYKIYIFKVL
Sbjct: 97 EKKPAEEKKSTAAEKAPPAEKKPKAGKKLPKEGASAAGDKKKKRSKKNVETYKIYIFKVL 276
Query: 65 KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 124
KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 277 KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 456
Query: 125 LAKHAVSEGTKAVTKFTSS 143
LAKHAVSEGTK+VTKFTSS
Sbjct: 457 LAKHAVSEGTKSVTKFTSS 513
>TC14310 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (92%)
Length = 502
Score = 209 bits (532), Expect = 1e-55
Identities = 117/138 (84%), Positives = 125/138 (89%), Gaps = 1/138 (0%)
Frame = +3
Query: 2 AKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIF 61
AK +KKPAEKKPAA + A AEKKP+AEKKI AKEGG+ +KKKK+SKK+VETYKIYIF
Sbjct: 66 AKAEKKPAEKKPAAEK---APAEKKPKAEKKI-AKEGGS--EKKKKKSKKSVETYKIYIF 227
Query: 62 KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 121
KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL L
Sbjct: 228 KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLGL 407
Query: 122 PGELAKHAVSEGTK-AVT 138
PGELAKHAVSE + AVT
Sbjct: 408 PGELAKHAVSEXNQXAVT 461
>AI967840
Length = 393
Score = 179 bits (454), Expect = 2e-46
Identities = 98/119 (82%), Positives = 105/119 (87%)
Frame = +1
Query: 1 MAKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYI 60
MAKG+KKPAEKKPAA EKA A +AEKK+P K+ A+ DKKKK+ K+VETYKIYI
Sbjct: 52 MAKGEKKPAEKKPAA--EKAPPA----KAEKKVPTKDA-ASVDKKKKKKSKSVETYKIYI 210
Query: 61 FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 119
FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL
Sbjct: 211 FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 387
>AU251825
Length = 237
Score = 149 bits (377), Expect = 1e-37
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +3
Query: 1 MAKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYI 60
MAKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYI
Sbjct: 12 MAKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYI 191
Query: 61 FKVLKQVHPDIGISS 75
FKVLKQVHPDIGISS
Sbjct: 192FKVLKQVHPDIGISS 236
>AV415208
Length = 242
Score = 103 bits (258), Expect = 9e-24
Identities = 56/74 (75%), Positives = 63/74 (84%)
Frame = +3
Query: 3 KGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFK 62
K +KKPAEKKPAAAE+ A AEKKP+AEKKI G+ +KKKKR+KK+VETYKIYIFK
Sbjct: 33 KAEKKPAEKKPAAAEK--APAEKKPKAEKKISKDATGS--EKKKKRTKKSVETYKIYIFK 200
Query: 63 VLKQVHPDIGISSK 76
VLKQVHPDIGISSK
Sbjct: 201 VLKQVHPDIGISSK 242
>BP037334
Length = 318
Score = 88.2 bits (217), Expect = 5e-19
Identities = 46/57 (80%), Positives = 51/57 (88%)
Frame = -2
Query: 87 DIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
DIFEKLAQESSRLARY++KPTITSREI VRLVLPGELA+ VSEG +AVT+FTSS
Sbjct: 317 DIFEKLAQESSRLARYHQKPTITSREIPPPVRLVLPGELAQPPVSEGPQAVTQFTSS 147
>BI418928
Length = 496
Score = 36.6 bits (83), Expect = 0.002
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = +3
Query: 2 AKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKI 58
A GDK P EKKP EEK +KKP EK P ++ ++K K K++ KI
Sbjct: 267 AAGDKPPPEKKP---EEKPKTDDKKPEEEKTKPDEK---KAEEKTKTPKQSTVVMKI 419
>TC8736 similar to PIR|T06396|T06396 isoprenylated protein - soybean
(fragment) {Glycine max;}, partial (84%)
Length = 1268
Score = 32.7 bits (73), Expect = 0.024
Identities = 21/51 (41%), Positives = 25/51 (48%), Gaps = 9/51 (17%)
Frame = +2
Query: 6 KKPAEKKPAAAEE---------KAAAAEKKPRAEKKIPAKEGGAAGDKKKK 47
KK EK AAAE KAA EKK +K+ P +G GD+K K
Sbjct: 533 KKDGEKPKAAAEPEKKKDSEKPKAAEPEKKKDGDKEKPKSDGPKKGDEKPK 685
Score = 28.9 bits (63), Expect = 0.35
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 5 DKKPAEKKPAAAEEKAAAAEKKPRA----EKKIPAKEGGAAGDKKKKRSKK 51
+KK KP AAE + +KP+A EKK +++ AA +KKK K
Sbjct: 485 EKKKEADKPKAAEHEKKKDGEKPKAAAEPEKKKDSEKPKAAEPEKKKDGDK 637
>TC10919 similar to UP|SRS1_ORYSA (P83649) Salt-stress root protein RS1,
partial (14%)
Length = 551
Score = 31.6 bits (70), Expect = 0.054
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 5 DKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVE 54
++K E+KP AEE E +P E++ PA+ A K +K VE
Sbjct: 57 EEKKEEEKPQVAEETTEKVESEPPKEEEKPAEPVVAEAPPAAKEEEKPVE 206
>TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, partial
(57%)
Length = 1280
Score = 30.4 bits (67), Expect = 0.12
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Frame = +1
Query: 6 KKPAEKKPAAAEEKAAA------AEKKPRAEKKIPAKEGGAA 41
KK E++ A+EEKA A AEKKP+AE+ KEG AA
Sbjct: 349 KKKREEELKASEEKAKAEKRLKEAEKKPKAEEN-DKKEGTAA 471
>TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacetylase 1
(HD1), partial (5%)
Length = 636
Score = 29.6 bits (65), Expect = 0.21
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 6 KKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKN 52
K+P +K+ EE EKK + + P KE + KK+ KK+
Sbjct: 21 KEPEKKEEPKKEEPQKEEEKKDEPKSEEPQKEEAKKEEPKKEEEKKD 161
Score = 25.4 bits (54), Expect = 3.9
Identities = 18/65 (27%), Positives = 29/65 (43%)
Frame = +3
Query: 5 DKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFKVL 64
+KK K +E+A E K EKK KE ++KKK ++ ++ K
Sbjct: 75 EKKDEPKSEEPQKEEAKKEEPKKEEEKKDEKKE-----EEKKKEQPAQIDPVLEWV-KAY 236
Query: 65 KQVHP 69
+Q +P
Sbjct: 237 RQYNP 251
>TC15487 similar to UP|O23144 (O23144) Proton pump interactor
(AT4g27500/F27G19_100), partial (16%)
Length = 1153
Score = 29.6 bits (65), Expect = 0.21
Identities = 24/79 (30%), Positives = 35/79 (43%), Gaps = 10/79 (12%)
Frame = +2
Query: 1 MAKGDKKPA--EKKPAAAEEKAAAAEKKPRAEKKIPAKE--------GGAAGDKKKKRSK 50
M D+KP E KPA + + A K+P+ E K +E D K K K
Sbjct: 173 MRNPDEKPLLEEPKPAETDAFSKAIPKQPKEEPKPSPQETLPTQKESKNKVRDLKAKPDK 352
Query: 51 KNVETYKIYIFKVLKQVHP 69
K++E Y F+V ++ P
Sbjct: 353 KDLEEADEYEFEVPRKETP 409
>BP049555
Length = 555
Score = 29.6 bits (65), Expect = 0.21
Identities = 18/35 (51%), Positives = 20/35 (56%), Gaps = 4/35 (11%)
Frame = +2
Query: 2 AKGDKKPAEKKPAAAEEKAAAAEK----KPRAEKK 32
AK ++K EK AEEK AA EK KP EKK
Sbjct: 263 AKPEEKTEEKAEEKAEEKPAAEEKKEEEKPEEEKK 367
>TC17612
Length = 687
Score = 29.6 bits (65), Expect = 0.21
Identities = 19/49 (38%), Positives = 27/49 (54%)
Frame = +3
Query: 11 KKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIY 59
K+P +E+A + K KK K+GG GDKKK S++ E K+Y
Sbjct: 378 KEPEKKKEEAKKDDGKKDDNKK---KDGG--GDKKKDESEQIAELVKLY 509
>TC19835 similar to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Fragment), partial
(16%)
Length = 550
Score = 29.3 bits (64), Expect = 0.27
Identities = 21/59 (35%), Positives = 31/59 (51%), Gaps = 7/59 (11%)
Frame = +1
Query: 3 KGDKKPAEKKPAA-------AEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVE 54
K +K+ +++ AA A E + +KK R + A E A+ KKKK+SKKN E
Sbjct: 223 KKEKRKLDQEVAAENGTNGNASEPRSVKKKKDRKDDNGEAVEA-ASESKKKKKSKKNAE 396
>TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like protein, complete
Length = 1794
Score = 28.5 bits (62), Expect = 0.46
Identities = 15/46 (32%), Positives = 25/46 (53%)
Frame = +1
Query: 5 DKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSK 50
D+ E+K +EK +K+ + + + + G AG+KKKKR K
Sbjct: 1594 DEDGDEEKEVVKKEKK---KKRKESTENVELQNGDDAGEKKKKRKK 1722
Score = 24.3 bits (51), Expect = 8.7
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = +1
Query: 6 KKPAEKKPAAAEEKAA------AAEKKPRAEKKIPAKEGGAAGDKKKKRSKKN 52
KK +KK + E A EKK + +K +E KKK + KK+
Sbjct: 1627 KKEKKKKRKESTENVELQNGDDAGEKKKKRKKHAEPEESAEMPSKKKGKKKKS 1785
>TC9175 weakly similar to UP|INAD_DROME (Q24008)
Inactivation-no-after-potential D protein, partial (5%)
Length = 692
Score = 28.1 bits (61), Expect = 0.60
Identities = 22/54 (40%), Positives = 30/54 (54%), Gaps = 3/54 (5%)
Frame = +2
Query: 2 AKGDKKPAEKKPAAAEEKAA-AAEKKPRAEKKIPAKE--GGAAGDKKKKRSKKN 52
A + KP EKK EEKAA A+K+ E+K KE GG G ++ K+ + N
Sbjct: 110 AAEEGKPEEKK---EEEKAAEEAKKEEGGEEKNDNKEEKGGEEGKEEGKKEENN 262
Score = 26.9 bits (58), Expect = 1.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 3 KGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYK 57
K ++ E+KPAA E K +++ +A ++ +EGG +K + +K E K
Sbjct: 77 KKEEGKEEEKPAAEEGKPEEKKEEEKAAEEAKKEEGGE--EKNDNKEEKGGEEGK 235
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.308 0.125 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,527,411
Number of Sequences: 28460
Number of extensions: 14202
Number of successful extensions: 191
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of query: 143
length of database: 4,897,600
effective HSP length: 82
effective length of query: 61
effective length of database: 2,563,880
effective search space: 156396680
effective search space used: 156396680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0369c.6