TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0368c.9
         (764 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662087                                                              207  4e-54
BP030435                                                              162  2e-40
TC18698                                                                72  3e-13
AV410603                                                               51  8e-07
TC18092                                                                35  0.059
BP039437                                                               28  5.5
AV409790                                                               28  5.5
BP063313                                                               28  7.2
TC16287 homologue to BAD12186 (BAD12186) 12-oxophytodienoic acid...    28  7.2
BP085372                                                               27  9.4

>BG662087 
          Length = 373

 Score =  207 bits (528), Expect = 4e-54
 Identities = 101/120 (84%), Positives = 107/120 (89%)
 Frame = +1

Query: 368 NGK*PMCVDYTDLNKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKD 427
           +GK  M VDYTDLNKACPKDSYPLPSIDKLVDGAS+NELLSLMDAYSGYHQIKMH SD+D
Sbjct: 13  SGKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDED 192

Query: 428 KTAFMTARANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEANH 487
           KTAFMTAR NY YQT+PFGLKN GATYQ LMDRVF D VGRNMEVY+ +MIVKS L ANH
Sbjct: 193 KTAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372


>BP030435 
          Length = 533

 Score =  162 bits (409), Expect = 2e-40
 Identities = 81/120 (67%), Positives = 93/120 (77%)
 Frame = +1

Query: 1   LLAARRPMSARSGKNSMPKEVGAIAGGFGGGGVTSAARKRYVRAVNAVTEVPFGFLHPDI 60
           L+A  +P   + G   +PK V  IAGGFGGGG+TSAARKRY RAVN VTEV FGF HP I
Sbjct: 172 LIATGKPTRIQGGNAPVPKGVHTIAGGFGGGGITSAARKRYARAVNTVTEVLFGFSHPVI 351

Query: 61  TISSADFFGVEQHLYDPIVVLLRINQFNVQRVLLDQGSSADIIYGDAFDQLGLDERDLTP 120
           T SS DF  ++ HL +PIV+LLR+NQ NVQRVLLDQGSSADIIYG  FD+LGL+E DLTP
Sbjct: 352 TFSSDDFIRIKPHLDNPIVILLRVNQLNVQRVLLDQGSSADIIYGGVFDRLGLNEADLTP 531


>TC18698 
          Length = 808

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 37/66 (56%), Positives = 43/66 (65%)
 Frame = -2

Query: 426 KDKTAFMTARANYSYQTMPFGLKNTGATYQRLMDRVFADQVGRNMEVYVGDMIVKSVLEA 485
           K KT     R NY YQ MP GLKN   TYQRLMD++F  Q+ +N+EVYV DMIVKS  E 
Sbjct: 807 KKKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE* 628

Query: 486 NHHEEL 491
            H  +L
Sbjct: 627 FHRGDL 610


>AV410603 
          Length = 162

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 21/48 (43%), Positives = 32/48 (65%)
 Frame = +1

Query: 386 KDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQIKMHSSDKDKTAFMT 433
           KDS+P+P++D+L+D    ++  S +D  SGYHQI +   D+ KT F T
Sbjct: 10  KDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRT 153


>TC18092 
          Length = 519

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = -2

Query: 373 MCVDYTDLNKACPKDSYPLPSIDKLVDGASNNELL 407
           MCV  TD+NK CP+   PL SI+ LVD +S+ E L
Sbjct: 101 MCVC*TDINKDCPR--XPLTSINALVDYSSSYEYL 3


>BP039437 
          Length = 524

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -2

Query: 409 LMDAYSGYHQIKMHSSDKDKTAFMTARANYSYQTMPFGLKNTGATYQRLMDRVFA-DQVG 467
           L + +S   ++ + S D D    +T+   YS + M   +KN    +       FA  +VG
Sbjct: 493 LHELFSNGIRVWIFSGDTDGRVPVTS-TKYSIKKMNLPIKNVWRPW-------FAYGEVG 338

Query: 468 RNMEVYVGDMIVKSVLEANH 487
              EVY GD+   +V EA H
Sbjct: 337 GYTEVYKGDLTFATVREAGH 278


>AV409790 
          Length = 421

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 21/52 (40%), Positives = 25/52 (47%), Gaps = 6/52 (11%)
 Frame = -3

Query: 692 GRC------CRSQTYQEGSSRGQ*TCRSMVCSMTREGR*ERKL*QISW*S*H 737
           GRC       RS+ +QEGS R    CR+ +CS    GR*        W* *H
Sbjct: 392 GRCGKWRWGARSRCFQEGSCRHLRECRATLCSHIC*GR*R-------W*L*H 258


>BP063313 
          Length = 386

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 211 KCYCNAIDRYGRKSALTGHRCHEVNVPEENLDSRG 245
           K Y   IDR+G++ AL         + EEN+++ G
Sbjct: 102 KAYIRPIDRFGQRYALDPFFTKLTGITEENIETEG 206


>TC16287 homologue to BAD12186 (BAD12186) 12-oxophytodienoic acid
           10,11-reductase, partial (23%)
          Length = 534

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 381 NKACPKDSYPLPSIDKLVDGASNNELLSLMDAYSGYHQ 418
           NK CP  SY   SID ++   +++   S ++++S +HQ
Sbjct: 132 NKVCPVFSY---SIDPILSSITSSNYKSSIESFSHWHQ 28


>BP085372 
          Length = 459

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 13  GKNSMPKEVGAIAGGFGGGGVTSA 36
           G   +P   G   GG+GG GVTSA
Sbjct: 403 GYGGVPGSYGGGGGGYGGQGVTSA 332


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.337    0.145    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,377,842
Number of Sequences: 28460
Number of extensions: 137949
Number of successful extensions: 1016
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of query: 764
length of database: 4,897,600
effective HSP length: 97
effective length of query: 667
effective length of database: 2,136,980
effective search space: 1425365660
effective search space used: 1425365660
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (27.3 bits)