TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0368b.6
         (480 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE122611                                                               42  6e-08
AV411435                                                               46  2e-05
AV428268                                                               43  1e-04
AV412895                                                               42  3e-04
BP068806                                                               41  5e-04
BP076564                                                               37  0.009
AV767121                                                               32  0.18
AV777124                                                               32  0.23
AV426428                                                               32  0.23
TC19933                                                                32  0.30
BP060359                                                               31  0.39
BP058188                                                               30  0.87
TC10037                                                                30  1.1
AV427022                                                               29  1.9
BF177726                                                               28  2.5
AU089037                                                               28  2.5
TC8070 similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (73%)           27  5.6
TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%)         27  7.4
CN825238                                                               27  7.4
TC19924                                                                27  7.4

>BE122611 
          Length = 357

 Score = 42.0 bits (97), Expect(2) = 6e-08
 Identities = 24/65 (36%), Positives = 32/65 (48%), Gaps = 1/65 (1%)
 Frame = -3

Query: 128 VWGRTTSGINSTASAYELLTENIEDTGPDP-MWCLLWRWKGAPCVKMFLWKVLNNGLMVN 186
           +W   ++G  S  S Y LL   IED G +   W L+W+      V+ FLW V  N L  N
Sbjct: 322 LWTEESNGCYSAKSTYNLL---IEDGGNESRFWSLVWKANAPEKVRFFLWLVGRNALPSN 152

Query: 187 VKRVH 191
            +R H
Sbjct: 151 ARRHH 137



 Score = 31.6 bits (70), Expect(2) = 6e-08
 Identities = 15/34 (44%), Positives = 16/34 (46%)
 Frame = -2

Query: 185 VNVKRVHNHLADSDLCPLCGTLSESVIHALRDCP 218
           V  K+   HLA S  C  CG  SE   H  R CP
Sbjct: 158 VQCKKAPYHLASSAACIRCGAPSEDANHVFRWCP 57


>AV411435 
          Length = 426

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 27/104 (25%), Positives = 41/104 (38%), Gaps = 9/104 (8%)
 Frame = +3

Query: 129 WGRTTSGINSTASAYELLT------ENIEDTGPDP---MWCLLWRWKGAPCVKMFLWKVL 179
           W    SG  S  S Y  +        N+  +   P   +W  +W  +    V+ FLW+  
Sbjct: 51  WPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIWGAQVPKKVRSFLWRAA 230

Query: 180 NNGLMVNVKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVKPV 223
           NN + V       ++   D CP+C    E + HAL  C   + V
Sbjct: 231 NNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAV 362


>AV428268 
          Length = 429

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 28/83 (33%), Positives = 37/83 (43%)
 Frame = +3

Query: 138 STASAYELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMVNVKRVHNHLADS 197
           S  SAY+ L     +   D ++ LLW  K         WKVL N +   V      +  S
Sbjct: 9   SVKSAYDFL-HGCANAQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRGVVIS 185

Query: 198 DLCPLCGTLSESVIHALRDCPMV 220
           ++CPLC    ES  H L  CP+V
Sbjct: 186 NVCPLCSLDEESTDHLLFSCPIV 254


>AV412895 
          Length = 405

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 23/66 (34%), Positives = 32/66 (47%), Gaps = 3/66 (4%)
 Frame = +1

Query: 155 PDPMWCLLWRWKGAPCVKMFLWKVLNNGLMVN---VKRVHNHLADSDLCPLCGTLSESVI 211
           PDP++  +W       +K F+W+VL   +      +KR   H A   +CPLCG   ES  
Sbjct: 61  PDPVFN*IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVIHNALDAICPLCGLAEESGS 240

Query: 212 HALRDC 217
           H L  C
Sbjct: 241 HLLFSC 258


>BP068806 
          Length = 418

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +3

Query: 171 VKMFLWKVLNNGLMVNVKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVKPVRLANLPT 230
           +++++W ++   + VN  R    LA S   P C    E + H LRDC + + V    L  
Sbjct: 162 IRVWVWFIMQGAIQVNSFRFRCKLATSPAGPRCQHQFEDIWHCLRDCRIARDV-WVRLNA 338

Query: 231 GGESHFFSMELQAWL 245
            G   FF    QAW+
Sbjct: 339 LGWPGFFVSNAQAWV 383


>BP076564 
          Length = 371

 Score = 36.6 bits (83), Expect = 0.009
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = +2

Query: 179 LNNGLMVNVKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVKPV--RLANLPTGGESHF 236
           L+  L +N +R    +A +  C  C    + ++H L+DCP  + V  RL     GG   F
Sbjct: 98  LHQALPINARRHACSMAATGGCGRCSAAVKDILHCLQDCPHSREVWNRLGCSSFGG---F 268

Query: 237 FSMELQAWLLRNMRDGLQGWDRDAWTKRFAINVWCLWR 274
            S +  +WLL  M        +    ++    +W +WR
Sbjct: 269 LSSDGWSWLLSIM--------KQPNVEKLIYILWWIWR 358


>AV767121 
          Length = 525

 Score = 32.3 bits (72), Expect = 0.18
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +2

Query: 22  HRASESSIWNGVRNTWES-----FSCGIRWQIGDGKVVRF*QDRWLASGILLA 69
           H +  SS WN + +         FS G++  +G+G   +F  + WL SG+L A
Sbjct: 347 HYSCGSSWWNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWLGSGLLSA 505


>AV777124 
          Length = 534

 Score = 32.0 bits (71), Expect = 0.23
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 193 HLADSDLCPLCGTLSESVIHALRDCPMVKPVRLANLPTG 231
           HLA S  CPL     ES +H  RD  +++PV    L +G
Sbjct: 291 HLASSTKCPLLREQHESELHLFRDRQVIQPV*EMRLDSG 175


>AV426428 
          Length = 413

 Score = 32.0 bits (71), Expect = 0.23
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +3

Query: 162 LWRWKGAPCVKMFLWKVLNNGLMVNVKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVK 221
           LW+ +  P      W+     L V        LA+  +CP C    ++  HA+  CP V 
Sbjct: 54  LWKAEALPRCCETGWRACLGVLPVKASLHARGLAEDPICPRCLAAPKTADHAVLFCP*VH 233

Query: 222 PVRLAN 227
           P+  A+
Sbjct: 234 PIWFAS 251


>TC19933 
          Length = 472

 Score = 31.6 bits (70), Expect = 0.30
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 147 TENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMVNVKRVHNHLADSDLCPLC 203
           + N+E +  +  W  + + K +  VK FLWK+ +N + +         A    CP+C
Sbjct: 179 SHNVEQSPLNSWWSSI*KAKVSNKVKHFLWKLCHNAIPLKGNLRRRGCATDGKCPIC 9


>BP060359 
          Length = 496

 Score = 31.2 bits (69), Expect = 0.39
 Identities = 14/31 (45%), Positives = 18/31 (57%)
 Frame = -1

Query: 193 HLADSDLCPLCGTLSESVIHALRDCPMVKPV 223
           HLA S  CPL     ES +H  RD  +++PV
Sbjct: 361 HLASSTECPLLREXHESELHLFRDRQVIQPV 269


>BP058188 
          Length = 551

 Score = 30.0 bits (66), Expect = 0.87
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
 Frame = +3

Query: 216 DCPMVKPVRLANLPTGGESHFFSM--------ELQAWLLRNMRDGLQGWDRDAWTKR 264
           D P + P  LA L      H FS+        E   W L +M+ GL GW   + +KR
Sbjct: 294 DTPFISPSHLALLV*VDGWHLFSLGWPLAGSEEAGPWQL*DMKSGLYGWSGPSLSKR 464


>TC10037 
          Length = 560

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 13/29 (44%), Positives = 18/29 (61%)
 Frame = -3

Query: 200 CPLCGTLSESVIHALRDCPMVKPVRLANL 228
           C  C  L E++ HALRDCP  + V  A++
Sbjct: 387 CLRCDRLEETMDHALRDCP*ARRVWFASV 301


>AV427022 
          Length = 429

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
 Frame = +1

Query: 193 HLADSDLCPLCGTLSESVIHALRDCPMVKPVRLANLPTGGESHFFSMELQAWL------L 246
           H A   +CPLC    ES  H L  C                S     E  AWL      +
Sbjct: 19  HNALEAICPLCCLAEESGSHLLFSC--------------SNSMLI*YECHAWLGVSTAQV 156

Query: 247 RNMRDGLQGWDRDAWTKRFAINVWCLWRMM*YSIMCSGIVLRYNAG 292
            + +  L  +    W+K   +    +W  + +SI C   ++ +N G
Sbjct: 157 SDPKVHLLQFSSIGWSKAQKLGESAIWMSVLWSIWCLRNMVVFNGG 294


>BF177726 
          Length = 509

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 10/21 (47%), Positives = 16/21 (75%), Gaps = 1/21 (4%)
 Frame = +3

Query: 256 WDRDAWTKRF-AINVWCLWRM 275
           W R++W  RF ++N+W LWR+
Sbjct: 405 WRRESW*TRFVSLNLWRLWRL 467


>AU089037 
          Length = 245

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 19/80 (23%), Positives = 36/80 (44%), Gaps = 3/80 (3%)
 Frame = -1

Query: 143 YELLTENIEDTGPDPMWCLLWRWKGAPCVKMFLWKVLNNGLMV--NVKRVHN-HLADSDL 199
           Y +L  +I+    D ++  LW+         F W+++ + +    N++R      ++  L
Sbjct: 245 YAVLLGSIQVPSSD-IFQKLWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEAL 69

Query: 200 CPLCGTLSESVIHALRDCPM 219
           CP+C    ES  H    CP+
Sbjct: 68  CPMCSQCEESSSHLFFSCPL 9


>TC8070 similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (73%)
          Length = 1758

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 18/71 (25%), Positives = 30/71 (41%), Gaps = 5/71 (7%)
 Frame = +2

Query: 271  CLWRMM*YSIMCSGIVLRYNAGLCRASMMMVWLPLMLSQVLRVRKALAGYFMQWD----- 325
            CLWR +                L R  + ++WLPL+ ++      +L  Y   WD     
Sbjct: 962  CLWRCI---------------NLFRLLLSLLWLPLL*AKSSTWEGSLGQY*SLWDYT*SC 1096

Query: 326  GLRSTSGSSVW 336
            G+++  GS +W
Sbjct: 1097 GVKTQRGSLLW 1129


>TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%)
          Length = 425

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 256 WDRDAWTKRFAINVWCLWR 274
           W R  WT R A+  W LWR
Sbjct: 295 WLRWWWTVRLAVEGWLLWR 239


>CN825238 
          Length = 692

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 23/107 (21%), Positives = 41/107 (37%), Gaps = 6/107 (5%)
 Frame = +3

Query: 112 IMESLPRHLSSAPGLPVWGRTTSGINSTASAYELLT-----ENIEDTGPDPMWCLLWRWK 166
           +++S+P    +     +W  + +G  S  SAY  +      +          W  LWR  
Sbjct: 369 VIKSIPLGWRTTRNSCLWRWSRNGAFSVRSAYYNIQVAKEMQTSSSAASSFPWKKLWRTP 548

Query: 167 GAPCVKMFLWKVLNNGLMVNVKRVHNHLADSDLCPLCG-TLSESVIH 212
               +K F ++V  N +          +A  + CP C   + ES+ H
Sbjct: 549 VPNKMKHFAYRVARNIIPCRENLQRRGIAVQNECPTCNHQIPESMSH 689


>TC19924 
          Length = 525

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 178 VLNNGLMVNVKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVKPVRLAN 227
           +LNN   ++ +RV N    S LCP+C    E+V HA+  C   + V L +
Sbjct: 353 LLNN---LHKRRVLN----SPLCPICFAAPETVEHAIFHCNGTRLVGLGS 225


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.334    0.143    0.505 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,773,476
Number of Sequences: 28460
Number of extensions: 174332
Number of successful extensions: 1480
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of query: 480
length of database: 4,897,600
effective HSP length: 94
effective length of query: 386
effective length of database: 2,222,360
effective search space: 857830960
effective search space used: 857830960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (26.6 bits)