TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0367.7
         (172 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI419719                                                              206  2e-54
BP082149                                                               85  8e-18
TC11703 homologue to UP|Q9ZSQ6 (Q9ZSQ6) T-complex protein 1 epsi...    29  0.38
CB827141                                                               27  1.4
BP064315                                                               26  4.2
TC13151 similar to UP|Q9SKS8 (Q9SKS8) At2g20920 protein (At2g209...    25  5.5
TC15314                                                                25  7.2
TC14328 homologue to GB|AAG21976.1|10716947|AF263377 SKP1 intera...    25  9.4
TC13174 similar to UP|Q8GYL6 (Q8GYL6) Regulator of chromosome co...    25  9.4

>BI419719 
          Length = 531

 Score =  206 bits (523), Expect = 2e-54
 Identities = 96/125 (76%), Positives = 113/125 (89%)
 Frame = +2

Query: 1   NVAIIKSSKDTRYGLDSIVTHDGTKLPCWALANLSSFKQKFGVDAYEQLDVIGIDEAQFF 60
           NV ++KSSKDTRY +DS+V+HDG K PCWAL +L SFK+K+G +AY++LDVIGIDEAQFF
Sbjct: 155 NVVMLKSSKDTRYAIDSVVSHDGVKFPCWALPDLMSFKEKYGHEAYQKLDVIGIDEAQFF 334

Query: 61  DDLYDFCREAADHDGKTVVVAGLDGNYLRRNFGSVLDIIPLADSVTKLTARCEICGKHAF 120
           +DLYDFC +AAD DGK VVVAGLDG+YLRR+FGSVL IIPLAD+VTKLTARCE+CGK AF
Sbjct: 335 EDLYDFCCKAADVDGKIVVVAGLDGDYLRRSFGSVLHIIPLADTVTKLTARCELCGKRAF 514

Query: 121 FTLRK 125
           FTLRK
Sbjct: 515 FTLRK 529


>BP082149 
          Length = 449

 Score = 84.7 bits (208), Expect = 8e-18
 Identities = 39/39 (100%), Positives = 39/39 (100%)
 Frame = -3

Query: 134 IGGVDVYMPVCRQHYVNGQVAMETTRLVLESQKVECGSH 172
           IGGVDVYMPVCRQHYVNGQVAMETTRLVLESQKVECGSH
Sbjct: 447 IGGVDVYMPVCRQHYVNGQVAMETTRLVLESQKVECGSH 331


>TC11703 homologue to UP|Q9ZSQ6 (Q9ZSQ6) T-complex protein 1 epsilon subunit
           (Fragment), partial (53%)
          Length = 665

 Score = 29.3 bits (64), Expect = 0.38
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 38  KQKFGVDAYEQLDVIGIDEAQFFDDLYDFCREAADHDGKTVVV 80
           K K  +D  E+   +   E ++FDD+   C++A    G T+V+
Sbjct: 259 KHKVDIDTVEKFQTLRKQEVKYFDDMVQQCKDA----GATLVI 375


>CB827141 
          Length = 513

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 18/51 (35%), Positives = 22/51 (42%)
 Frame = +3

Query: 91  NFGSVLDIIPLADSVTKLTARCEICGKHAFFTLRKTQETQVELIGGVDVYM 141
           + G  L   P+A    +L    E CGKH FF L      + ELI     YM
Sbjct: 342 DLGGFLSGDPIAKEAARLVG--EACGKHGFF-LVANHGIEAELISHAHSYM 485


>BP064315 
          Length = 350

 Score = 25.8 bits (55), Expect = 4.2
 Identities = 11/36 (30%), Positives = 21/36 (57%), Gaps = 1/36 (2%)
 Frame = +1

Query: 12  RYGLDSIVTHDGTKLPCWALANLSSFKQKF-GVDAY 46
           +Y ++ +  HD  +L CW   N+S+  + F GV ++
Sbjct: 235 KYKMEELNDHDSLELFCWHAFNMSTPAENFEGVSSH 342


>TC13151 similar to UP|Q9SKS8 (Q9SKS8) At2g20920 protein
           (At2g20920/F5H14.11), partial (21%)
          Length = 562

 Score = 25.4 bits (54), Expect = 5.5
 Identities = 15/52 (28%), Positives = 26/52 (49%), Gaps = 6/52 (11%)
 Frame = +2

Query: 70  AADHDGKTVVVAGLDGNYLRRNFGSVLDIIPLADSVT------KLTARCEIC 115
           A ++  +  +V+ LD +Y       ++ + PL  S+       KLT +CEIC
Sbjct: 326 AVENSLRVAIVSYLDIHYPASVLSEIIVVSPLLVSLYLRWRDGKLTLKCEIC 481


>TC15314 
          Length = 770

 Score = 25.0 bits (53), Expect = 7.2
 Identities = 8/22 (36%), Positives = 15/22 (67%)
 Frame = +2

Query: 137 VDVYMPVCRQHYVNGQVAMETT 158
           ++V+  VC+ H++NG V +  T
Sbjct: 11  MEVFQEVCQAHHINGTVRVHYT 76


>TC14328 homologue to GB|AAG21976.1|10716947|AF263377 SKP1 interacting
           partner 1 {Arabidopsis thaliana;}, partial (5%)
          Length = 620

 Score = 24.6 bits (52), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 100 PLADSVTKLTARCEICGKH 118
           P    VTK+  RC++C +H
Sbjct: 283 PNLSIVTKINPRCKLCNRH 339


>TC13174 similar to UP|Q8GYL6 (Q8GYL6) Regulator of chromosome condensation
           like (Cell cycle regulatory protein), partial (25%)
          Length = 519

 Score = 24.6 bits (52), Expect = 9.4
 Identities = 12/28 (42%), Positives = 18/28 (63%), Gaps = 3/28 (10%)
 Frame = -3

Query: 74  DGKTVVVAGLDGNYL---RRNFGSVLDI 98
           DG+ VVV G+D N +   RRN+G  + +
Sbjct: 226 DGEGVVVTGVDANNVGR*RRNWGRFVSV 143


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,612,697
Number of Sequences: 28460
Number of extensions: 29496
Number of successful extensions: 117
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of query: 172
length of database: 4,897,600
effective HSP length: 84
effective length of query: 88
effective length of database: 2,506,960
effective search space: 220612480
effective search space used: 220612480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)