BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0367.12
(545 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial... 567 e-162
TC18085 256 5e-69
CN825078 231 2e-61
TC18636 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial... 198 2e-51
TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imp... 191 3e-49
TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partia... 190 6e-49
TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional ... 185 2e-47
AI967706 150 4e-37
BF177544 136 1e-32
AV415616 135 1e-32
TC16678 similar to UP|Q8GVE2 (Q8GVE2) Chitin-inducible gibberell... 105 2e-23
AV414168 99 2e-21
TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin r... 99 2e-21
AV770800 86 2e-17
BP077395 74 6e-14
TC17852 similar to UP|Q8W4I8 (Q8W4I8) SCARECROW gene regulator, ... 71 5e-13
AV418844 69 2e-12
TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial ... 67 6e-12
TC16184 67 6e-12
BP057332 67 1e-11
>TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (57%)
Length = 1406
Score = 567 bits (1462), Expect = e-162
Identities = 282/344 (81%), Positives = 302/344 (86%)
Frame = +1
Query: 200 KMVSVAGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPITSKELMSYMDILYQVCPY 259
KMVSVAGDP QRLGAY+LEGLRARLE SGSLIYKALKCEQP T KELMSYM ILYQ+CPY
Sbjct: 4 KMVSVAGDPSQRLGAYLLEGLRARLELSGSLIYKALKCEQP-TGKELMSYMHILYQICPY 180
Query: 260 WKFTYISSNVVIGEAMQNESRIHIIDFQITQGTQWLLLIQALASRPGGPPFIRVTGVDDS 319
WKF YIS+N I EAM NESRIHIIDFQI QGTQW LLIQALA RPGGPPFIR+TGVDDS
Sbjct: 181 WKFAYISANAAIAEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPFIRITGVDDS 360
Query: 320 LSFDARGGGLHIVGKRLSDFAKSCGVPFEFHSAAMSGCEVELENLVIRPGEALAVNFAFF 379
SF ARGGGL IVG+RLSDFA+S GVPFEFHSAAMSGCEVE ENL +RPGEALAVNF +
Sbjct: 361 QSFHARGGGLEIVGERLSDFARSYGVPFEFHSAAMSGCEVERENLGVRPGEALAVNFPYV 540
Query: 380 LHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSAMYE 439
LHHMPDESVSTENHRDRLLRLVKSLSPKVVTL EQESNTNTSPFF RF+ETL YY+AM+E
Sbjct: 541 LHHMPDESVSTENHRDRLLRLVKSLSPKVVTLAEQESNTNTSPFFNRFMETLEYYTAMFE 720
Query: 440 SIDVALPRDDKNRISAEQHCVARDIVNMIACEGAERVERHELFGKWRSRFSMAGFVPCPL 499
SIDVA PRDDK RISAEQHCVARDIVNM+ACEGAERVERHELFGKW+ RFSMAGF PL
Sbjct: 721 SIDVACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLRFSMAGFKQWPL 900
Query: 500 SSSVTASVRNILNEFNENYRLEHKDVALYLTWKNRAMCTASAWR 543
SSSV + +N+L +FN NYRLE +D AL L W RA+ T+SAWR
Sbjct: 901 SSSVMTATQNLLRDFNHNYRLEQRDGALCLGWMKRALVTSSAWR 1032
>TC18085
Length = 551
Score = 256 bits (655), Expect = 5e-69
Identities = 124/124 (100%), Positives = 124/124 (100%)
Frame = +2
Query: 1 MQASQKHSTSSGVHLYHQPVQDIDAYTHYQILQSNSSHGNNNSHGAAASFETCKENYFTL 60
MQASQKHSTSSGVHLYHQPVQDIDAYTHYQILQSNSSHGNNNSHGAAASFETCKENYFTL
Sbjct: 179 MQASQKHSTSSGVHLYHQPVQDIDAYTHYQILQSNSSHGNNNSHGAAASFETCKENYFTL 358
Query: 61 ESSSPAATDLIGCDSASDASVSSNYRSPSQSYHSDQHQSSDNTYGSPSISAHSSDDGSYK 120
ESSSPAATDLIGCDSASDASVSSNYRSPSQSYHSDQHQSSDNTYGSPSISAHSSDDGSYK
Sbjct: 359 ESSSPAATDLIGCDSASDASVSSNYRSPSQSYHSDQHQSSDNTYGSPSISAHSSDDGSYK 538
Query: 121 LKHK 124
LKHK
Sbjct: 539 LKHK 550
>CN825078
Length = 650
Score = 231 bits (590), Expect = 2e-61
Identities = 115/197 (58%), Positives = 146/197 (73%)
Frame = +3
Query: 202 VSVAGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPITSKELMSYMDILYQVCPYWK 261
VS+ G+PIQRLGAYM+EGL AR E+SG+ IY AL C +P +EL+SYM +L+++CPY K
Sbjct: 63 VSINGEPIQRLGAYMVEGLVARKEASGNSIYHALNCREP-EGEELLSYMQLLFEICPYLK 239
Query: 262 FTYISSNVVIGEAMQNESRIHIIDFQITQGTQWLLLIQALASRPGGPPFIRVTGVDDSLS 321
F Y+++N I EA +NE RIHIIDFQI QG+QW+ L+QALA+RPGG P +R+TG+DD +S
Sbjct: 240 FGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVS 419
Query: 322 FDARGGGLHIVGKRLSDFAKSCGVPFEFHSAAMSGCEVELENLVIRPGEALAVNFAFFLH 381
ARG GL IVGKRL+ ++ G+P EFH + G +V + L IRPGEALAVNF LH
Sbjct: 420 KYARGDGLDIVGKRLALMSEKFGIPVEFHGVPVFGPDVTRDMLDIRPGEALAVNFPLQLH 599
Query: 382 HMPDESVSTENHRDRLL 398
H DESV N RD LL
Sbjct: 600 HTADESVDVSNPRDGLL 650
>TC18636 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (10%)
Length = 813
Score = 198 bits (503), Expect = 2e-51
Identities = 93/97 (95%), Positives = 93/97 (95%)
Frame = +1
Query: 449 DKNRISAEQHCVARDIVNMIACEGAERVERHELFGKWRSRFSMAGFVPCPLSSSVTASVR 508
DKN ISAEQHCVARDIVNMIACEG ERVE HELFGKWRSRFSM GFVPCPLSSSVTASVR
Sbjct: 1 DKNSISAEQHCVARDIVNMIACEGXERVEXHELFGKWRSRFSMXGFVPCPLSSSVTASVR 180
Query: 509 NILNEFNENYRLEHKDVALYLTWKNRAMCTASAWRCF 545
NILNEFNENYRLEHKDVALYLTWKNRAMCTASAWRCF
Sbjct: 181 NILNEFNENYRLEHKDVALYLTWKNRAMCTASAWRCF 291
>TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(27%)
Length = 711
Score = 191 bits (484), Expect = 3e-49
Identities = 85/142 (59%), Positives = 112/142 (78%)
Frame = +3
Query: 402 KSLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSAMYESIDVALPRDDKNRISAEQHCVA 461
K LSPKVVTLVEQE NTN +PF QRFVET++YY A++ESIDV LPR+ K RI+ EQHC+A
Sbjct: 6 KCLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYQAVFESIDVVLPREHKERINVEQHCLA 185
Query: 462 RDIVNMIACEGAERVERHELFGKWRSRFSMAGFVPCPLSSSVTASVRNILNEFNENYRLE 521
R++VN++ACEGAERVERHEL KWR RF+ AGF P PL+S + +S++++L + +Y LE
Sbjct: 186 REVVNLVACEGAERVERHELLNKWRMRFASAGFTPYPLNSYINSSIKDLLESYRGHYTLE 365
Query: 522 HKDVALYLTWKNRAMCTASAWR 543
+D AL+L W N+ + + AWR
Sbjct: 366 ERDGALFLGWMNQVLVASCAWR 431
>TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partial (47%)
Length = 1392
Score = 190 bits (482), Expect = 6e-49
Identities = 104/294 (35%), Positives = 172/294 (58%), Gaps = 5/294 (1%)
Frame = +2
Query: 255 QVCPYWKFTYISSNVVIGEAMQNESRIHIIDFQITQGTQWLLLIQALASRPGGPPFIRVT 314
+ CPY KF + ++N I EA Q + R+H+IDF I QG QW L+QALA RPGGPP R+T
Sbjct: 2 ETCPYLKFAHFTANQAILEAFQGKDRVHVIDFAINQGMQWPALMQALALRPGGPPAFRLT 181
Query: 315 GVDDSLSFDARGGGLHIVGKRLSDFAKSCGVPFEFHS-AAMSGCEVELENLVIRP--GEA 371
G+ ++ L VG +L+ A++ V FE+ A S +++ L +RP E+
Sbjct: 182 GIGPPAPDNS--DHLQQVGWKLAQLAETIHVQFEYRGFVANSLADLDASMLDLRPPEEES 355
Query: 372 LAVNFAFFLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETL 431
+AVN F LH + ++ +++ +++ + P+++T+VEQE+ N + F RF E+L
Sbjct: 356 VAVNSVFELHKL----LARPGALEKVFSVIRQVQPEILTVVEQEAGHNGASFLDRFTESL 523
Query: 432 SYYSAMYESIDVALPRDDKNRISAEQHCVARDIVNMIACEGAERVERHELFGKWRSRFSM 491
YYSA+++S++ + + +++ E + + + I N++ACEG++R+ERHE +WR+RF+
Sbjct: 524 HYYSALFDSLEGSSAVESQDKAMTEIY-LGKQICNVVACEGSDRIERHETLTQWRTRFNS 700
Query: 492 AGFVPCPLSSSVTASVRNILNEF--NENYRLEHKDVALYLTWKNRAMCTASAWR 543
AG P L S+ +L F + YR+E + L L W R + SAW+
Sbjct: 701 AGLSPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLTLGWHTRPLIATSAWQ 862
>TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
regulator-like, partial (49%)
Length = 1051
Score = 185 bits (469), Expect = 2e-47
Identities = 111/250 (44%), Positives = 147/250 (58%), Gaps = 1/250 (0%)
Frame = +3
Query: 297 LIQALASRPGGPPF-IRVTGVDDSLSFDARGGGLHIVGKRLSDFAKSCGVPFEFHSAAMS 355
L+ L++R G P ++V V + D L VG L A+ + FEF +
Sbjct: 3 LLHELSARLAGKPVTVKVIAVAE----DGADERLKTVGDMLGQQAERLRIGFEFKVVSCK 170
Query: 356 GCEVELENLVIRPGEALAVNFAFFLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQE 415
E+ E L P E LAVNFAF L MPDESVSTEN RD LLR VK+LSP+VVTLVEQE
Sbjct: 171 LAELTREALGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKALSPRVVTLVEQE 350
Query: 416 SNTNTSPFFQRFVETLSYYSAMYESIDVALPRDDKNRISAEQHCVARDIVNMIACEGAER 475
NTNT+PF R E+ SYYSA+++SI+ + R+ R+ EQ ++R + N +ACEG +R
Sbjct: 351 LNTNTAPFVPRVTESCSYYSALFDSIESTVARESLERVKIEQG-LSRKVGNSVACEGRDR 527
Query: 476 VERHELFGKWRSRFSMAGFVPCPLSSSVTASVRNILNEFNENYRLEHKDVALYLTWKNRA 535
VER E+FGKWR+R SMAGF P+ V S+ L N ++ ++ + W R
Sbjct: 528 VERCEVFGKWRARMSMAGFRLRPVGQRVAESITAQLGAEN-RVTVKEENGGICCGWVGRT 704
Query: 536 MCTASAWRCF 545
+ ASAWR F
Sbjct: 705 LTVASAWR*F 734
>AI967706
Length = 357
Score = 150 bits (380), Expect = 4e-37
Identities = 69/109 (63%), Positives = 90/109 (82%)
Frame = +2
Query: 367 RPGEALAVNFAFFLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQR 426
R GEAL VNFAF LHHM DESVST N RD+LLR+VKSL+PK+VT+VEQ+ NTNTSPF R
Sbjct: 29 RQGEALVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFLPR 208
Query: 427 FVETLSYYSAMYESIDVALPRDDKNRISAEQHCVARDIVNMIACEGAER 475
F+ YYSA+++S+D LPR+ ++R++ E+ C+ARDIVN++ACEG +R
Sbjct: 209 FIIAYEYYSAVFDSLDATLPRESQDRVNVERQCLARDIVNIVACEGEDR 355
>BF177544
Length = 318
Score = 136 bits (342), Expect = 1e-32
Identities = 64/94 (68%), Positives = 80/94 (85%)
Frame = +3
Query: 364 LVIRPGEALAVNFAFFLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPF 423
L RPGEAL VNFAF LHHMPDESVST N RD+LLRLVKSL+PK+VT+VEQ+ NTNT+PF
Sbjct: 36 LSCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTAPF 215
Query: 424 FQRFVETLSYYSAMYESIDVALPRDDKNRISAEQ 457
QRFVE YYSA++ES+D+ LPR+ ++R++ E+
Sbjct: 216 LQRFVEAYKYYSAVFESLDITLPRESQDRMNVER 317
>AV415616
Length = 316
Score = 135 bits (341), Expect = 1e-32
Identities = 69/103 (66%), Positives = 79/103 (75%), Gaps = 6/103 (5%)
Frame = +2
Query: 340 AKSCGVPFEFHSAAMSGCEVELENLVIRPGEALAVNFAFFLHHMPDESVST------ENH 393
AKSC VPFEFH+ S EV+L++L IRP EA+AVNFA LHH+PDESV T +NH
Sbjct: 8 AKSCNVPFEFHAIGTSPSEVQLQDLEIRPEEAIAVNFAMMLHHVPDESVDTQNQGWSQNH 187
Query: 394 RDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSA 436
R+RLLRL K LSPKVVTLVEQESNTN PF RFVET++YY A
Sbjct: 188 RNRLLRLAKCLSPKVVTLVEQESNTNNLPFLPRFVETMNYYLA 316
>TC16678 similar to UP|Q8GVE2 (Q8GVE2) Chitin-inducible
gibberellin-responsive protein, partial (14%)
Length = 740
Score = 105 bits (262), Expect = 2e-23
Identities = 48/80 (60%), Positives = 63/80 (78%)
Frame = +3
Query: 463 DIVNMIACEGAERVERHELFGKWRSRFSMAGFVPCPLSSSVTASVRNILNEFNENYRLEH 522
D+VN+IACEG ERVERHELFGKW+SR +MAGF PLSS V + ++N+L ++E+Y L
Sbjct: 3 DVVNVIACEGKERVERHELFGKWKSRLTMAGFRQSPLSSYVNSVIKNLLRCYSEHYTLIE 182
Query: 523 KDVALYLTWKNRAMCTASAW 542
KD A+ L WKNR++ +ASAW
Sbjct: 183 KDGAMLLGWKNRSLISASAW 242
>AV414168
Length = 208
Score = 99.0 bits (245), Expect = 2e-21
Identities = 46/69 (66%), Positives = 56/69 (80%)
Frame = +1
Query: 260 WKFTYISSNVVIGEAMQNESRIHIIDFQITQGTQWLLLIQALASRPGGPPFIRVTGVDDS 319
+KF Y+S+N I EAM+ E +HIIDFQI+QGTQW+ LIQALA RPGGPP +R+TGVDD+
Sbjct: 1 FKFGYMSANGAIAEAMKEEREVHIIDFQISQGTQWVSLIQALAHRPGGPPKVRITGVDDT 180
Query: 320 LSFDARGGG 328
S ARGGG
Sbjct: 181 FSSYARGGG 207
>TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin response
modulator, partial (33%)
Length = 556
Score = 98.6 bits (244), Expect = 2e-21
Identities = 53/123 (43%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Frame = +2
Query: 254 YQVCPYWKFTYISSNVVIGEAMQNESRIHIIDFQITQGTQWLLLIQALASRPGGPPFIRV 313
Y+ CPY KF + ++N I EA R+H++DF + QG QW L+QALA RPGGPP R+
Sbjct: 188 YESCPYLKFAHFTANQAILEAFATAGRVHVVDFGLKQGMQWPALMQALALRPGGPPTFRL 367
Query: 314 TGVDDSLSFDARGGGLHIVGKRLSDFAKSCGVPFEFHS-AAMSGCEVELENLVIRPGEAL 372
TG+ ++ L VG +L+ A++ GV FEF S +++ L IRPGEA+
Sbjct: 368 TGIGPPQPDNS--DALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNMLEIRPGEAV 541
Query: 373 AVN 375
AVN
Sbjct: 542 AVN 550
>AV770800
Length = 514
Score = 85.9 bits (211), Expect = 2e-17
Identities = 47/128 (36%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Frame = -1
Query: 417 NTNTSPFFQRFVETLSYYSAMYESIDVALPRDDKNRISAEQHCVARDIVNMIACEGAERV 476
N N +RF E L YYS +++S++ DK + + + R+I N++ CEG RV
Sbjct: 514 NHNEDGLLERFTEALHYYSTVFDSLEGCPVEPDK---ALAEMYLQREICNVVCCEGTARV 344
Query: 477 ERHELFGKWRSRFSMAGFVPCPLSSSVTASVRNILNEF-NENYRLEHKDVALYLTWKNRA 535
ERHE KWR R AGF P L S + F +E Y +E K+ L L W +R
Sbjct: 343 ERHEPLAKWRERLGKAGFRPVHLGSDAFTQASMLFTLFSSEGYCVEEKEGCLTLGWHSRP 164
Query: 536 MCTASAWR 543
ASAW+
Sbjct: 163 PLAASAWQ 140
>BP077395
Length = 397
Score = 73.9 bits (180), Expect = 6e-14
Identities = 29/73 (39%), Positives = 52/73 (70%)
Frame = -3
Query: 471 EGAERVERHELFGKWRSRFSMAGFVPCPLSSSVTASVRNILNEFNENYRLEHKDVALYLT 530
EG +R+ER+E+ GKWR+R +MAGF P P+S++V +R ++ + + Y+++ + AL+
Sbjct: 395 EGEDRIERYEVAGKWRARMTMAGFTPSPMSANVGDEIRKLIKLYCDRYKIKEEMGALHFG 216
Query: 531 WKNRAMCTASAWR 543
W+++ + ASAWR
Sbjct: 215 WEDKNLIVASAWR 177
>TC17852 similar to UP|Q8W4I8 (Q8W4I8) SCARECROW gene regulator, partial
(26%)
Length = 456
Score = 70.9 bits (172), Expect = 5e-13
Identities = 50/142 (35%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Frame = +2
Query: 372 LAVNFAFFLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETL 431
LAVNF L+++ DE T + LRL KSL P++VTL E E++ F RF L
Sbjct: 2 LAVNFMLQLYNLLDE---TPTAVETALRLAKSLKPRIVTLGEYEASLTRVGFVSRFKAAL 172
Query: 432 SYYSAMYESIDVALPRDDKNRISAEQHCVARDIVNMIACE--GAERVERHELFGKWRSRF 489
++SA++ES++ LP D R E + R I +I E G R ER E +WR
Sbjct: 173 KHFSALFESLEPNLPSDSPERFQVESLLLGRRIAGVIGPELPGCVR-ERMEDKEQWRVLM 349
Query: 490 SMAGFVPCPLSSSVTASVRNIL 511
GF LS + + +L
Sbjct: 350 ESCGFESVSLSHYAISQAKILL 415
>AV418844
Length = 284
Score = 68.9 bits (167), Expect = 2e-12
Identities = 36/89 (40%), Positives = 53/89 (59%)
Frame = +1
Query: 276 QNESRIHIIDFQITQGTQWLLLIQALASRPGGPPFIRVTGVDDSLSFDARGGGLHIVGKR 335
+NES +HIIDF I G QW LI++L+ R GGPP +RVTG++ + G+R
Sbjct: 1 KNESSVHIIDFGICYGFQWPCLIKSLSERHGGPPRLRVTGIELPRPGFRPAERVEETGRR 180
Query: 336 LSDFAKSCGVPFEFHSAAMSGCEVELENL 364
L ++ K VPFE++ A ++LE+L
Sbjct: 181 LENYCKKFKVPFEYNCLAKKWETIKLEDL 267
>TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial (16%)
Length = 670
Score = 67.4 bits (163), Expect = 6e-12
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +1
Query: 460 VARDIVNMIACEGAERVERHELFGKWRSRFSMAGFVPCPLSSSVTASVRNILNEF--NEN 517
+ I N++ACEG +RVERHE +WR+R AGF P L S+ +L F +
Sbjct: 64 LGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFNPVHLGSNAFKQASMLLALFAGGDG 243
Query: 518 YRLEHKDVALYLTWKNRAMCTASAWR 543
YR+E + L L W R + SAW+
Sbjct: 244 YRVEENNGCLMLGWHTRPLIATSAWK 321
>TC16184
Length = 702
Score = 67.4 bits (163), Expect = 6e-12
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +1
Query: 436 AMYESIDVALPRDDKNRISAEQHCVARDIVNMIACEGAERVERHELFGKWRSRFSMAGFV 495
A ++ D + RD++ R E+ V R+ +N+IACEG ERVER E + +W+ R + AGF
Sbjct: 1 ATFDMFDXVISRDNQWRRLIERESVGREAMNVIACEGLERVERPETYKRWQVRNTRAGFK 180
Query: 496 PCPLSSSVTASVRNILNE-FNENYRLEHKDVALYLTWKNRAMCTASAW 542
PL+ + R L + +++++ + + + WK R M ++ W
Sbjct: 181 QLPLNEGLMDKFRTKLKKWYHKDFVFDEDNNWMLQGWKGRIMYASTCW 324
>BP057332
Length = 494
Score = 66.6 bits (161), Expect = 1e-11
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Frame = -2
Query: 447 RDDKNRISAEQHCVARDIVNMIACEGAERVERHELFGKWRSRFSMAGFVPCPLSSSVTAS 506
R+DK + E+ RD VN+IACEGAERVER E + +W+ R GF PL+ +++
Sbjct: 493 REDKYXLMFEEGLFGRDAVNVIACEGAERVERPETYKQWQVRNRRPGFKQLPLAPELSSR 314
Query: 507 VRNIL-NEFNENYRLEHKDVALYLTWKNRAMCTASAW 542
V+ ++ E+++++ ++ + WK R + S W
Sbjct: 313 VKEMVKKEYHKDFVVDEDGKWVLQGWKGRILHAVSCW 203
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,226,023
Number of Sequences: 28460
Number of extensions: 142903
Number of successful extensions: 801
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of query: 545
length of database: 4,897,600
effective HSP length: 95
effective length of query: 450
effective length of database: 2,193,900
effective search space: 987255000
effective search space used: 987255000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0367.12