TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0360.9
         (107 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17121                                                               158  3e-40
BP037005                                                               25  1.5
BP041961                                                               25  2.6
TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding pro...    24  4.4
TC9197 weakly similar to UP|Q9FK16 (Q9FK16) Emb|CAB71094.1, part...    23  5.8
AW720181                                                               23  9.8

>TC17121 
          Length = 641

 Score =  158 bits (399), Expect(2) = 3e-40
 Identities = 89/98 (90%), Positives = 89/98 (90%)
 Frame = +2

Query: 1   ELSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAESQA*EA 60
           ELSELKKTLNVEVEQLRTEFQDLRTTL QQQEDVTASLRNLGLQDVS D KKAESQ  EA
Sbjct: 227 ELSELKKTLNVEVEQLRTEFQDLRTTLQQQQEDVTASLRNLGLQDVSTDVKKAESQ--EA 400

Query: 61  KIEEID*KEQQVLPEEDNSKDAEN*TGFSLEYLLLLAV 98
           KIEEID KEQQVLPEEDNSK AEN*TG SLEYLLL AV
Sbjct: 401 KIEEIDQKEQQVLPEEDNSKVAEN*TGLSLEYLLLPAV 514



 Score = 20.4 bits (41), Expect(2) = 3e-40
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 97  AV*PLEKLNVF 107
           +V*P EKLNVF
Sbjct: 511 SV*PSEKLNVF 543


>BP037005 
          Length = 569

 Score = 25.4 bits (54), Expect = 1.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 6   KKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSA 48
           KKT   E E+L+   Q+    L   +ED+  +  N G + V +
Sbjct: 437 KKTYGEEQEELKKALQEAVEGLEDDEEDLFITKENAGEEKVES 565


>BP041961 
          Length = 424

 Score = 24.6 bits (52), Expect = 2.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 28  HQQQEDVTASLRNLGLQDVSADGKKAE 54
           HQ++ D TA   N  +++VS  GK+ E
Sbjct: 281 HQREPDCTAEESNRIVENVSQSGKRNE 361


>TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding protein CP29,
           complete
          Length = 1116

 Score = 23.9 bits (50), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 5   LKKTLNVEVEQLRTEFQDLRTTLHQQQEDV 34
           L K L  +V   RTEF+D+++T  Q   +V
Sbjct: 355 LAKNLAGDVIGTRTEFEDVKSTPFQPYSEV 444


>TC9197 weakly similar to UP|Q9FK16 (Q9FK16) Emb|CAB71094.1, partial (57%)
          Length = 483

 Score = 23.5 bits (49), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (52%)
 Frame = -3

Query: 11  VEVEQLRTEFQDLRTTLHQQQEDVTASLRNLG 42
           VE+EQ     +D+      QQE+V+ SL   G
Sbjct: 346 VEIEQKNESMEDVCDRQSHQQEEVSNSLIQRG 251


>AW720181 
          Length = 277

 Score = 22.7 bits (47), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   LSELKKTLN-VEVEQLRTEFQDLRTTLHQQ 30
           + +LK+  N  EVE LR E+    TTL ++
Sbjct: 125 IEDLKRKSNEAEVESLREEYHQRVTTLERR 214


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.331    0.144    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,009,561
Number of Sequences: 28460
Number of extensions: 6825
Number of successful extensions: 28
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of query: 107
length of database: 4,897,600
effective HSP length: 83
effective length of query: 24
effective length of database: 2,535,420
effective search space: 60850080
effective search space used: 60850080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)