BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0360.7
(485 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17302 544 e-155
TC12104 357 2e-99
AV769241 66 1e-11
TC12283 similar to UP|AAR23700 (AAR23700) At1g65040, partial (21%) 62 2e-10
TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-l... 52 2e-07
TC14669 similar to PIR|E86326|E86326 protein F18O14.3 [imported]... 50 8e-07
TC19557 similar to PIR|E86326|E86326 protein F18O14.3 [imported]... 47 5e-06
AV413409 47 7e-06
BP065703 46 1e-05
TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 45 2e-05
TC11793 similar to UP|AAR99376 (AAR99376) Ring domain containing... 44 8e-05
TC10567 similar to UP|AAR99376 (AAR99376) Ring domain containing... 43 1e-04
TC12569 UP|Q40221 (Q40221) Protein containing C-terminal RING-fi... 42 2e-04
TC16693 weakly similar to PIR|T51842|T51842 RING-H2 finger prote... 42 3e-04
TC11970 similar to UP|Q9FQZ7 (Q9FQZ7) Avr9/Cf-9 rapidly elicited... 42 3e-04
TC12446 similar to PIR|T51854|T51854 RING-H2 finger protein RHF2... 41 4e-04
TC15079 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 41 4e-04
TC18336 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 41 4e-04
TC13101 similar to PIR|E86378|E86378 protein F21J9.10 [imported]... 41 4e-04
TC9772 weakly similar to GB|AAG50239.1|12276054|AF304126 RING an... 41 4e-04
>TC17302
Length = 820
Score = 544 bits (1402), Expect = e-155
Identities = 273/273 (100%), Positives = 273/273 (100%)
Frame = +2
Query: 149 RGGAAVNETVPLVSSSASLAGSVQGDGDAAGNGAESDSRGSSSYQRYDIQQVAKWIEQIL 208
RGGAAVNETVPLVSSSASLAGSVQGDGDAAGNGAESDSRGSSSYQRYDIQQVAKWIEQIL
Sbjct: 2 RGGAAVNETVPLVSSSASLAGSVQGDGDAAGNGAESDSRGSSSYQRYDIQQVAKWIEQIL 181
Query: 209 PFSLLLLIVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISFAFILQ 268
PFSLLLLIVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISFAFILQ
Sbjct: 182 PFSLLLLIVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISFAFILQ 361
Query: 269 VTCIYWWYRNDDLLYPLIMLPPRPTPFWHSVFIILVNDVLVRQAAMVFKCFLLIYYKNGK 328
VTCIYWWYRNDDLLYPLIMLPPRPTPFWHSVFIILVNDVLVRQAAMVFKCFLLIYYKNGK
Sbjct: 362 VTCIYWWYRNDDLLYPLIMLPPRPTPFWHSVFIILVNDVLVRQAAMVFKCFLLIYYKNGK 541
Query: 329 GHNFRRQAQMLTLVEYMLLLYRALLPTLVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSII 388
GHNFRRQAQMLTLVEYMLLLYRALLPTLVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSII
Sbjct: 542 GHNFRRQAQMLTLVEYMLLLYRALLPTLVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSII 721
Query: 389 EKVRGFISAFKALSRKDVHYGVYATMEQVNAAG 421
EKVRGFISAFKALSRKDVHYGVYATMEQVNAAG
Sbjct: 722 EKVRGFISAFKALSRKDVHYGVYATMEQVNAAG 820
>TC12104
Length = 771
Score = 357 bits (917), Expect = 2e-99
Identities = 169/202 (83%), Positives = 185/202 (90%), Gaps = 1/202 (0%)
Frame = +1
Query: 285 LIMLPPRPTP-FWHSVFIILVNDVLVRQAAMVFKCFLLIYYKNGKGHNFRRQAQMLTLVE 343
L M+PP+ TP FWH++FI+LVND LVRQA M FKC LLIYYK+ +GHNFRRQAQMLTLVE
Sbjct: 1 LAMVPPKATPPFWHTIFIVLVNDTLVRQATMAFKCLLLIYYKDSRGHNFRRQAQMLTLVE 180
Query: 344 YMLLLYRALLPTLVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKALSR 403
Y LLLYRALLPT VWYRFFLN++YGSLFSSLTTGLYLTFKLTS++EKVR F SA KALS+
Sbjct: 181 YTLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVRCFFSALKALSK 360
Query: 404 KDVHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRA 463
+VHYG YATMEQVNAAG+LCAICQEKMHSP+LL CKH+FCEECVSEWFERERTCPLCRA
Sbjct: 361 HEVHYGAYATMEQVNAAGNLCAICQEKMHSPILLCCKHMFCEECVSEWFERERTCPLCRA 540
Query: 464 LVKPADLQTFGDGSTSLFFQLF 485
VKPADLQTFGDGSTSLFFQLF
Sbjct: 541 SVKPADLQTFGDGSTSLFFQLF 606
>AV769241
Length = 546
Score = 66.2 bits (160), Expect = 1e-11
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 456 RTCPLCRALVKPADLQTFGDGSTSLFFQLF 485
RTCPLCRALVKPADLQTFGDGSTSLFFQLF
Sbjct: 546 RTCPLCRALVKPADLQTFGDGSTSLFFQLF 457
>TC12283 similar to UP|AAR23700 (AAR23700) At1g65040, partial (21%)
Length = 390
Score = 62.4 bits (150), Expect = 2e-10
Identities = 27/58 (46%), Positives = 36/58 (61%)
Frame = +2
Query: 412 ATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPAD 469
AT E++NA C IC+E+M + L C H+F C+ W ER+ TCP CRALV P +
Sbjct: 101 ATPEELNARDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 274
>TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-like,
partial (32%)
Length = 706
Score = 52.0 bits (123), Expect = 2e-07
Identities = 22/48 (45%), Positives = 28/48 (57%), Gaps = 4/48 (8%)
Frame = +1
Query: 424 CAICQEKMHSP----VLLRCKHIFCEECVSEWFERERTCPLCRALVKP 467
CA+C + S VL +CKH F +C+ WF TCPLCR LV+P
Sbjct: 424 CAVCLSEFESGETGRVLPKCKHAFHTDCIDMWFHSHSTCPLCRTLVEP 567
>TC14669 similar to PIR|E86326|E86326 protein F18O14.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(77%)
Length = 1120
Score = 50.1 bits (118), Expect = 8e-07
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +2
Query: 411 YATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWF---ERERTCPLCRALVKP 467
YA +A C IC + P++ C H+FC C+ +W + R CP+C+ALV+
Sbjct: 89 YAGNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEE 268
Query: 468 ADL-QTFGDGSTS 479
L +G G TS
Sbjct: 269 EKLVPLYGRGKTS 307
>TC19557 similar to PIR|E86326|E86326 protein F18O14.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(24%)
Length = 457
Score = 47.4 bits (111), Expect = 5e-06
Identities = 21/53 (39%), Positives = 30/53 (55%), Gaps = 4/53 (7%)
Frame = +2
Query: 418 NAAGDL-CAICQEKMHSPVLLRCKHIFCEECVSEWF---ERERTCPLCRALVK 466
N AGD C IC E PV+ C H+FC C+ W + + CP+C+AL++
Sbjct: 290 NDAGDFECNICFELAQDPVITLCGHLFCWPCLYRWLHHHSQSQECPVCKALIQ 448
>AV413409
Length = 374
Score = 47.0 bits (110), Expect = 7e-06
Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 4/48 (8%)
Frame = +1
Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVKP 467
CA+C + LR C H+F EC+ EW TCP+CRA + P
Sbjct: 49 CAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLSSHSTCPVCRANLTP 192
>BP065703
Length = 480
Score = 46.2 bits (108), Expect = 1e-05
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -3
Query: 389 EKVRGFISAFKALSRKDVHYGVYATMEQVNAAGDL--CAICQEKMHSPVLLRCKHIFCEE 446
E++R + LS + + E++ A ++ C +C ++ V+++C H+FC
Sbjct: 430 EELRELNNXIAELSSETGEAAIQKLEEEIRACKNMIKCTVCSDRPKEVVIVKCYHLFCNP 251
Query: 447 CVSEWFE-RERTCPLCRALVKPADLQ 471
C+ E R R CP C A +D++
Sbjct: 250 CIQRNLELRHRKCPACGAAFGQSDVR 173
>TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (27%)
Length = 793
Score = 45.4 bits (106), Expect = 2e-05
Identities = 20/53 (37%), Positives = 26/53 (48%), Gaps = 4/53 (7%)
Frame = +2
Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVKPADLQT 472
CA+C + LR C H+F ECV W + TCP+CRA + D T
Sbjct: 26 CAVCLNEFRDHETLRLIPKCSHVFHAECVDAWLVNQSTCPVCRANLLQGDAAT 184
>TC11793 similar to UP|AAR99376 (AAR99376) Ring domain containing protein,
partial (23%)
Length = 527
Score = 43.5 bits (101), Expect = 8e-05
Identities = 24/106 (22%), Positives = 48/106 (44%), Gaps = 14/106 (13%)
Frame = +3
Query: 379 YLTFKLTSIIEKVRGFISAFK---ALSRKDVHYGVYATMEQVNAAGDLCAICQEKMHSPV 435
Y T L + +E+ I +F+ +L + A ++ ++ G C IC + + PV
Sbjct: 207 YQTMALDAYLEETMSQIDSFEDRPSLEKWKSSTDFIAESDRTSSGGFDCNICLDCVQDPV 386
Query: 436 LLRCKHIFCEECVSEWF-----------ERERTCPLCRALVKPADL 470
+ C H++C C+ +W + + CP+C++ V + L
Sbjct: 387 VTLCGHLYCWPCIYKWLNSNSASSENVEQNKPQCPVCKSEVSQSSL 524
>TC10567 similar to UP|AAR99376 (AAR99376) Ring domain containing protein,
partial (27%)
Length = 423
Score = 43.1 bits (100), Expect = 1e-04
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Frame = +2
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWF-----------ERERTCPLCRALVKPADL-Q 471
C+IC +++ PV+ C H++C C+ +W ++E CP+C++ + + L
Sbjct: 86 CSICLDRVQDPVVTLCGHLYCWPCIYKWLNFHSVSSDHEEKKEPQCPVCKSEISESSLVP 265
Query: 472 TFGDGSTSL 480
+G T+L
Sbjct: 266 LYGRDQTAL 292
>TC12569 UP|Q40221 (Q40221) Protein containing C-terminal RING-finger,
complete
Length = 2092
Score = 42.4 bits (98), Expect = 2e-04
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 410 VYATMEQVNAAGDLCAICQEKMHSP----VLLRCKHIFCEECVSEWFERERTCPLCRALV 465
+Y + EQ G C IC E+ + L C H + C+ +W ++ CP+C+A V
Sbjct: 1745 IYCSSEQGQDEGS-CVICLEEYKNMDDVGTLKTCGHDYHVNCIKKWLSMKKLCPICKASV 1921
Query: 466 KPAD 469
P D
Sbjct: 1922 MPED 1933
>TC16693 weakly similar to PIR|T51842|T51842 RING-H2 finger protein RHA2a
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (35%)
Length = 442
Score = 41.6 bits (96), Expect = 3e-04
Identities = 33/102 (32%), Positives = 46/102 (44%), Gaps = 4/102 (3%)
Frame = +2
Query: 373 SLTTGLYLTFKLTSIIEKVRGFISAFKALSRKDVHYGVYATMEQVNAAGDLCAICQ---E 429
S+TT YL F IE+ I K S ++ +E V C +C E
Sbjct: 116 SITTKQYLEF-----IEENNPTIRYAKRRSS-------WSELEHVVPDDTECRVCLSEFE 259
Query: 430 KMHSPVLLRCKHIFCEECVSEWF-ERERTCPLCRALVKPADL 470
+ L+CKH F ++C+ +W E TCPLCR V P D+
Sbjct: 260 EGEKVRRLKCKHTFHKDCLDKWLQECWATCPLCRKQVLPCDV 385
>TC11970 similar to UP|Q9FQZ7 (Q9FQZ7) Avr9/Cf-9 rapidly elicited protein
132, partial (24%)
Length = 789
Score = 41.6 bits (96), Expect = 3e-04
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 435 VLLRCKHIFCEECVSEWFERERTCPLCRALVKPAD----LQTFGDGSTSLF 481
+L +C H F +C+ WF+ TCPLCR V D LQ+ S+S F
Sbjct: 43 LLPKCNHGFHVDCIDMWFQSHSTCPLCRTSVASHDSDNNLQSSSSDSSSTF 195
>TC12446 similar to PIR|T51854|T51854 RING-H2 finger protein RHF2a
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (38%)
Length = 550
Score = 41.2 bits (95), Expect = 4e-04
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 418 NAAGDLCAICQEKM---HSPVLLRCKHIFCEECVSEWFERERTCPLC 461
+A D C+IC E + + CKH F +C+ EW +R CP+C
Sbjct: 185 DACDDACSICLEDLCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 325
>TC15079 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (20%)
Length = 921
Score = 41.2 bits (95), Expect = 4e-04
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVKP 467
CA+C + LR C H++ C+ W TCP+CRA + P
Sbjct: 624 CAVCLNEFEDDETLRLIPICNHVYHHSCIDLWLASHSTCPVCRASLLP 767
>TC18336 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (15%)
Length = 761
Score = 41.2 bits (95), Expect = 4e-04
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
Frame = +3
Query: 424 CAICQEKMHSP----VLLRCKHIFCEECVSEWFERERTCPLCRA 463
CA+C + P VL +C H+F C+ W TCP+CRA
Sbjct: 6 CAVCLGEFEGPDALRVLPKCGHVFHPGCIDMWLASHVTCPVCRA 137
>TC13101 similar to PIR|E86378|E86378 protein F21J9.10 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(47%)
Length = 588
Score = 41.2 bits (95), Expect = 4e-04
Identities = 16/45 (35%), Positives = 23/45 (50%)
Frame = +3
Query: 422 DLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVK 466
D C IC E VL C H C +C +W + +CP CR+ ++
Sbjct: 150 DECGICLEPCTKIVLPYCCHAMCIKCYCKWNRKSESCPFCRSSLR 284
>TC9772 weakly similar to GB|AAG50239.1|12276054|AF304126 RING and zinc
finger protein {Caenorhabditis elegans;} , partial (13%)
Length = 558
Score = 41.2 bits (95), Expect = 4e-04
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLC 461
C IC++ PV+ +CKH FCE C + + + C +C
Sbjct: 36 CFICRQPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 149
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,871,143
Number of Sequences: 28460
Number of extensions: 138225
Number of successful extensions: 956
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of query: 485
length of database: 4,897,600
effective HSP length: 94
effective length of query: 391
effective length of database: 2,222,360
effective search space: 868942760
effective search space used: 868942760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0360.7