BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0360.4
(968 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18634 144 5e-35
TC9002 84 1e-16
AV412173 51 1e-06
TC17645 35 0.044
TC10951 weakly similar to UP|Q93Z11 (Q93Z11) AT5g37360/MNJ8_150,... 33 0.22
AV422503 32 0.37
TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-l... 30 1.4
TC18788 weakly similar to UP|Q9SSA6 (Q9SSA6) F4P13.1 protein, pa... 30 1.4
TC8502 homologue to UP|Q84P31 (Q84P31) Aldehyde dehydrogenase fa... 30 1.8
TC17656 similar to GB|BAA97361.1|8843813|AB023042 Ca2+-transport... 29 3.1
TC11247 homologue to UP|O82482 (O82482) RAC GTP binding protein ... 29 4.1
TC15614 similar to PIR|T00553|T00553 disease resistance response... 28 5.3
TC11549 similar to UP|AAS51549 (AAS51549) ADL371Cp, partial (5%) 28 7.0
TC16422 similar to PIR|T05653|T05653 amino acid transport protei... 28 7.0
AV425976 28 7.0
TC16222 similar to UP|Q9FMP3 (Q9FMP3) Dihydropyrimidinase (Dihyd... 28 9.1
TC9828 similar to UP|Q7Y1Y8 (Q7Y1Y8) Cullin 3a (Fragment), parti... 28 9.1
>TC18634
Length = 477
Score = 144 bits (364), Expect = 5e-35
Identities = 73/75 (97%), Positives = 75/75 (99%)
Frame = +1
Query: 889 SVVCIILLAIAKVYTRKPPKYYFKTMLYYVALALGASGISYIAGILIKELLEKISNSESG 948
SVVCIILLAIA+VYTRKPPKYYFKTMLYYVALALGASGISYIAGILIKELLEKISNSESG
Sbjct: 1 SVVCIILLAIAQVYTRKPPKYYFKTMLYYVALALGASGISYIAGILIKELLEKISNSESG 180
Query: 949 FAFITMPNSDTSMEP 963
FAFITMP+SDTSMEP
Sbjct: 181 FAFITMPHSDTSMEP 225
>TC9002
Length = 633
Score = 84.0 bits (206), Expect = 1e-16
Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Frame = +2
Query: 859 IFGAVPLAIYGVLINKNYSSDVKLGIVAATSVVCIILLAIAKVYTRKPPKY--YFKTMLY 916
IFG VP +YG ++ D+KL VA SV+CI LLA AK YT +P Y YFKT+ +
Sbjct: 2 IFGLVPPIVYGFAFQESNDKDLKLAAVAGASVICITLLATAKAYTERPNNYMTYFKTITF 181
Query: 917 YVALALGASGISYIAGILIKELLEKISNSESGFAFITMPNSDTSM 961
YV + A+ ++Y+AG L+K L+E++ SE G + PNS S+
Sbjct: 182 YVTSGVLAALLTYLAGDLVKRLMEQLGWSEGG----SGPNSILSL 304
>AV412173
Length = 431
Score = 50.8 bits (120), Expect = 1e-06
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 738 VPGSDTQVLIDEQPRDETGERQQ-WEVLKSIVYGGLVESITSLGIVSSAVSSGAAPLNII 796
+PG QPR+ E + WE+LKSIVYGGL + + SL +V+SA S+ A LNI+
Sbjct: 247 IPGPSNTPDPVTQPRNGRAESSKGWEILKSIVYGGLGQLLASLSVVTSAASADATTLNIV 426
Query: 797 A 797
+
Sbjct: 427 S 429
Score = 36.2 bits (82), Expect = 0.026
Identities = 31/112 (27%), Positives = 43/112 (37%)
Frame = +1
Query: 251 ETHDLFCPNCNSCITKRVILKKRKRNIHSLDNKAKRDKLDIVASSDPVNSSAQESDRGVS 310
+ H+ +CP+C C+ K + + N S N K S PV+ +
Sbjct: 1 QNHEFYCPSCRVCVDKVLFCETGNFNNGSDSNPIK--------PSSPVSRPEPPT----- 141
Query: 311 ENVTSEIVSVETPDDNYHPEREPESDPEVFRCLACFSFFIPSGKGFNLFRNF 362
TPD E P ++P RC CFS+ I GK F FR F
Sbjct: 142 -----------TPD-----ELPPFNEP--VRCSECFSYLIEKGKDF--FRGF 237
>TC17645
Length = 652
Score = 35.4 bits (80), Expect = 0.044
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Frame = +3
Query: 256 FCPNCNSCITKRVIL------KKRKRNIHSLDNKAKRDKLDIVASSDPVNSSAQESDRGV 309
+C C + T + +L K+ K+N+ L K ++ SS+PV +++D+G
Sbjct: 57 YCEVCKTECTSKDVLDQHKLGKRHKKNLEKLRESLKPAQVHPSGSSNPVIGPREQNDKGK 236
Query: 310 SENVTSEIVSVETPDD 325
S + +ETP+D
Sbjct: 237 SISKLKSKRKIETPED 284
>TC10951 weakly similar to UP|Q93Z11 (Q93Z11) AT5g37360/MNJ8_150, partial
(30%)
Length = 571
Score = 33.1 bits (74), Expect = 0.22
Identities = 19/60 (31%), Positives = 33/60 (54%), Gaps = 5/60 (8%)
Frame = +2
Query: 735 GAVVPGSDTQVLIDEQPRDET-----GERQQWEVLKSIVYGGLVESITSLGIVSSAVSSG 789
G V+ S T +IDEQP++ET G+ Q L+ + G ++ +I G++S ++ G
Sbjct: 14 GRVLSASSTSAVIDEQPKEETRMLKFGDLQVEVTLEKAIIGAVIGTI--FGVLSWEIAQG 187
>AV422503
Length = 461
Score = 32.3 bits (72), Expect = 0.37
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -2
Query: 6 HQFIALHDDDEEEVEVEDGALKTRQSLPHSKETLVTEVVANGGEHRNGVSSVVTDLDGSF 65
HQ + +H EDGA+ + LPH +V A+G N V+ V++ DG
Sbjct: 217 HQHLTIH--------CEDGAMAANEVLPHGSRGVVLTHAAHG----NDVAGFVSESDGEK 74
Query: 66 VQKEKE 71
+K++E
Sbjct: 73 RRKKEE 56
>TC15481 similar to UP|Q9LUR1 (Q9LUR1) RING zinc finger protein-like,
partial (32%)
Length = 706
Score = 30.4 bits (67), Expect = 1.4
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Frame = +1
Query: 260 CNSCITKRVILKKRKRNIHSLDNKAKRDKLDIVASSDPVNSSAQESD--RGVSENVTSEI 317
C + +L+ R+R+ H+L +R + +V DP N + + D G+ S I
Sbjct: 163 CLHIYARWYLLRARRRHHHNL----RRRQAQLVFYPDPTNPTTLQQDIYPGIYAAAVSFI 330
Query: 318 VSVET----------PDDNYHPEREPESDPEVFRCLACF 346
+ P +Y P+ PE PE CL+ F
Sbjct: 331 AAAPRGLEASVITLLPVFSYDPKAHPEGPPECAVCLSEF 447
>TC18788 weakly similar to UP|Q9SSA6 (Q9SSA6) F4P13.1 protein, partial (7%)
Length = 951
Score = 30.4 bits (67), Expect = 1.4
Identities = 30/91 (32%), Positives = 41/91 (44%), Gaps = 3/91 (3%)
Frame = +1
Query: 121 AAESQNENSVYFDKQQDNKINGLNGFQNGDAATSVSLTNPGESDYDVQIENSV---TQRN 177
AA++ + V+ D +I ++ SVS+TN SD D Q NS+ QRN
Sbjct: 697 AADNPSSFGVFVDSLPSEEITK-EKYRFHSVDKSVSMTN---SDSDSQNMNSIDGEVQRN 864
Query: 178 LCSEVNDQCMKTVDDKVPSNSEVSPLHNSRD 208
+ V QC DK P + SP H S D
Sbjct: 865 VSVAVESQC----TDKSPKSCS-SPNHMSHD 942
>TC8502 homologue to UP|Q84P31 (Q84P31) Aldehyde dehydrogenase family 7
member A1 , partial (65%)
Length = 1415
Score = 30.0 bits (66), Expect = 1.8
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 469 SQISSTAESVKIGPGTENGI---KFHTASGNEPLADQKCLDSSFQNDFSSIKSTGG 521
+Q+S + VKIG ENGI HT S E +FQ S IKS GG
Sbjct: 472 NQLSEAYKQVKIGNPLENGILVGPLHTRSSAE----------NFQKGISVIKSQGG 609
>TC17656 similar to GB|BAA97361.1|8843813|AB023042 Ca2+-transporting
ATPase-like protein {Arabidopsis thaliana;} , partial
(25%)
Length = 821
Score = 29.3 bits (64), Expect = 3.1
Identities = 40/182 (21%), Positives = 79/182 (42%), Gaps = 2/182 (1%)
Frame = +2
Query: 758 RQQWEVLKSIVYGGLVESITSLGI-VSSAVSSGAAPLNIIALGLANLVGGLFILGHNLND 816
R + ++ + L ++ +L I V +A+SSG PLN + L NL+ +
Sbjct: 290 RSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATE 469
Query: 817 LKNNHSGGDQQQTNAQEDQYHELLGRRANFLLHAVVAVISFIIFGAVPLAIYGVLINK-N 875
+H D+ +E ++ R N L+ A+ V ++ +I G+ +K +
Sbjct: 470 PPTDHL-MDRSPVGRREPLITNIMWR--NLLIQAMYQVSVLLVLNFRGRSILGLTHDKFD 640
Query: 876 YSSDVKLGIVAATSVVCIILLAIAKVYTRKPPKYYFKTMLYYVALALGASGISYIAGILI 935
++ VK ++ V+C I + RKP ++ + L +G G++ + I+I
Sbjct: 641 HAVKVKNTLIFNAFVLCQI---FNEFNARKPDEFNIFKGVTKNYLFMGIVGLTVVLQIVI 811
Query: 936 KE 937
E
Sbjct: 812 VE 817
>TC11247 homologue to UP|O82482 (O82482) RAC GTP binding protein ARAC8
(At3g48040), partial (60%)
Length = 559
Score = 28.9 bits (63), Expect = 4.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 927 ISYIAGILIKELLEKISNSESGFAFITMPNSDTSMEP 963
I + I+ E + ++N + F + ++PNSDT EP
Sbjct: 312 IKHCGDIVRGEFVASVANEHASFPYSSIPNSDTLDEP 202
>TC15614 similar to PIR|T00553|T00553 disease resistance response protein
homolog F12L6.9 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (23%)
Length = 475
Score = 28.5 bits (62), Expect = 5.3
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Frame = +1
Query: 31 SLPHSKETLVTEVVANGGEHRNGVSSVVTDLDG--SFVQKEKEVAEIGSVGE 80
SL + +++V ++ +GGEH +GV L G EVA IG G+
Sbjct: 49 SLDGTSQSVVLTILLHGGEHHDGVVDDSISLFGVHRTASPNSEVAVIGGTGK 204
>TC11549 similar to UP|AAS51549 (AAS51549) ADL371Cp, partial (5%)
Length = 989
Score = 28.1 bits (61), Expect = 7.0
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = -2
Query: 387 TLPGSNANWFTSLFTSNKGKTATAKGNTSL--EHSTTAHVEQHCSTSVTSNVPASTDIGH 444
TLPG + N+ S N G T + SL EH + + CST++ ++ +
Sbjct: 382 TLPGLHLNYQISNDQYNSGVTLSELNLVSLWLEHMCSPSLIPTCSTTIDGSLLETQASAQ 203
Query: 445 LEGSLADTALI 455
+G L+ T L+
Sbjct: 202 EDGVLSRTVLV 170
>TC16422 similar to PIR|T05653|T05653 amino acid transport protein homolog
F22I13.20 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (38%)
Length = 685
Score = 28.1 bits (61), Expect = 7.0
Identities = 27/76 (35%), Positives = 36/76 (46%), Gaps = 1/76 (1%)
Frame = -1
Query: 49 EHRNGVSSVVTDLDGSFVQKEKEVAEI-GSVGENNSHFHDDRVDGGAAVGLRIVAEFVEA 107
E+R+GV+ V + + E EVA+ S+GE+N H D AA G VAE E
Sbjct: 556 ENRHGVAGGVAGEEAESGRDEDEVADAESSLGEDN-HGVDGEAAERAADGEAEVAEGSEF 380
Query: 108 AKNGEAIADASVGAAE 123
E I A+ G E
Sbjct: 379 GVPSEGIELAASGDEE 332
>AV425976
Length = 306
Score = 28.1 bits (61), Expect = 7.0
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 370 TSQNATSITAQNLQNPSTLPGSNANWFTSLFTSNKGKTATAKGNTSLEHSTTA 422
TS +T ITA NPS P +N TS T+ + ++T G + ST+A
Sbjct: 139 TSPGSTRITATRPGNPSGEPAANGAPSTSPTTAFRRPSSTPFGARASPSSTSA 297
>TC16222 similar to UP|Q9FMP3 (Q9FMP3) Dihydropyrimidinase
(Dihydropyrimidine amidohydrolase) , partial (27%)
Length = 570
Score = 27.7 bits (60), Expect = 9.1
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
Frame = +2
Query: 712 IVVVDREAIESTTSQTADNV-PVEGAVVPGSDTQVLI 747
I V D + ST N+ P +GA++PGSD ++I
Sbjct: 137 ISVTDYVRVTSTECAKVFNIYPKKGAILPGSDADIII 247
>TC9828 similar to UP|Q7Y1Y8 (Q7Y1Y8) Cullin 3a (Fragment), partial (39%)
Length = 551
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/60 (28%), Positives = 27/60 (44%)
Frame = -2
Query: 606 VLNPSEGIPGFLAPTTIGSLILEQSQKDVDGTSENIKNSYSSFTQSSVQSSGSSVPASVV 665
+L + I GFL+ +T+G + T+ I YS S+ + SS P S+V
Sbjct: 223 ILTSAASICGFLSSSTLGRVSSFSGSDSFGATTVPIFTLYSLLLNLSLTKNASSSPRSLV 44
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.309 0.127 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,919,131
Number of Sequences: 28460
Number of extensions: 146260
Number of successful extensions: 667
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of query: 968
length of database: 4,897,600
effective HSP length: 99
effective length of query: 869
effective length of database: 2,080,060
effective search space: 1807572140
effective search space used: 1807572140
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0360.4