TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0358.18
         (152 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP041362                                                               52  3e-08
TC14465 similar to UP|Q9XH69 (Q9XH69) Beta-amylase (Fragment), p...    26  2.6
BP067375                                                               26  3.4
TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromo...    25  7.6
AV772849                                                               25  7.6
TC18558 similar to UP|Q7XAE5 (Q7XAE5) S1 self-incompatibility lo...    24  10.0
TC8382 similar to UP|Q84WK9 (Q84WK9) At4g33985, partial (32%)          24  10.0

>BP041362 
          Length = 560

 Score = 52.4 bits (124), Expect = 3e-08
 Identities = 24/39 (61%), Positives = 29/39 (73%)
 Frame = +3

Query: 1   ATCTTCGGLTSLGEMSYDEQLMKLENARLREAIERISGI 39
           A+C  CGG T+ GEMS+DE  ++ ENARLRE  ERIS I
Sbjct: 441 ASCPNCGGPTAXGEMSFDEHHLRXENARLREEXERISSI 557


>TC14465 similar to UP|Q9XH69 (Q9XH69) Beta-amylase (Fragment), partial
           (68%)
          Length = 1340

 Score = 26.2 bits (56), Expect = 2.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 118 GHPLWVLSNNHNVETLNEEEYVREFPRGTGS 148
           G+PLW L   H+V T ++  +   F +  GS
Sbjct: 268 GNPLWGLGGPHDVPTYDQPPHSNNFFKDGGS 360


>BP067375 
          Length = 521

 Score = 25.8 bits (55), Expect = 3.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 77  GGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVRLARV 117
           GGD  ++LR S+ P++    +  I+     A   + RLARV
Sbjct: 353 GGDEEEILRPSIFPLMNPIKRMGIIWXHTTAKAAVQRLARV 475


>TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromosome 5, TAC
           clone:K14B20, partial (7%)
          Length = 782

 Score = 24.6 bits (52), Expect = 7.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 5   TCGGLTSLGEMSYDE 19
           TC GL SL +++YDE
Sbjct: 351 TCNGLVSLRKLNYDE 395


>AV772849 
          Length = 520

 Score = 24.6 bits (52), Expect = 7.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 121 LWVLSNNHNVETLNEE 136
           +W + NNHN +TLN++
Sbjct: 460 VWDIHNNHNGKTLNKQ 507


>TC18558 similar to UP|Q7XAE5 (Q7XAE5) S1 self-incompatibility locus-linked
           pollen 3.15 protein (Fragment), partial (18%)
          Length = 639

 Score = 24.3 bits (51), Expect = 10.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 114 LARVGHPLWVL 124
           L RVGHP+W++
Sbjct: 312 LCRVGHPVWII 280


>TC8382 similar to UP|Q84WK9 (Q84WK9) At4g33985, partial (32%)
          Length = 1176

 Score = 24.3 bits (51), Expect = 10.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 67  RAFDLGVGNYGGDG 80
           R F++G+G+ GGDG
Sbjct: 140 RIFEIGIGHGGGDG 99


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,490,813
Number of Sequences: 28460
Number of extensions: 27525
Number of successful extensions: 87
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of query: 152
length of database: 4,897,600
effective HSP length: 82
effective length of query: 70
effective length of database: 2,563,880
effective search space: 179471600
effective search space used: 179471600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)