TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0349b.2
         (400 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8023                                                                 53  1e-07
TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F...    32  0.24
BP033188                                                               30  0.71
BP070954                                                               28  3.5
CB829328                                                               27  6.0

>TC8023 
          Length = 1089

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 28/44 (63%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +3

Query: 11  FDLEAYLEKSEREDTYILNRFRDRRNLILEDSAPR-GRKHLSRD 53
           FD+EAY  +SE ED YI N FR RRNLILE   PR  RK+L+RD
Sbjct: 57  FDVEAYKRQSEIEDRYIFNLFRKRRNLILEGYTPRVKRKYLNRD 188


>TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;}, partial (36%)
          Length = 880

 Score = 31.6 bits (70), Expect = 0.24
 Identities = 24/105 (22%), Positives = 44/105 (41%)
 Frame = +3

Query: 68  NEPTYDDGIFRRRYRMQKHVFLRIVADLSSSDNYFTQRVDAAKKEGISPLAKCTTTMRML 127
           + P + +  FRR +RM K  F  I  +L S+      + +   +E I    +    +  L
Sbjct: 357 SHPDFPEEEFRRSFRMSKATFEMICRELDSA----VTKKNTMLREAIPVRQRVAVCIWRL 524

Query: 128 ANGVAADAVDEYIKIGETTTLECLRRFCKGIIRLYEQEYLRAPTQ 172
           A G     V +   +G +T  + +   C  I  +   ++LR P +
Sbjct: 525 ATGDPLRLVAKRFGLGISTCHKLVLEVCSAIKTVLMPKFLRWPDE 659


>BP033188 
          Length = 527

 Score = 30.0 bits (66), Expect = 0.71
 Identities = 13/35 (37%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
 Frame = -1

Query: 365 VDLVHRNHTRPRCYPLL-RIMCVLDPSCVIQKVHH 398
           V ++ R H RP C  L+ RI C+L+    + ++HH
Sbjct: 194 VSVLSRGHLRPNCKILVSRIFCMLERMSRVAEIHH 90


>BP070954 
          Length = 152

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 12/28 (42%), Positives = 15/28 (52%)
 Frame = +2

Query: 371 NHTRPRCYPLLRIMCVLDPSCVIQKVHH 398
           +HT   C+ L    C L P C+IQ V H
Sbjct: 65  HHTCDPCFALYL*ACALXPRCIIQCVLH 148


>CB829328 
          Length = 556

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 13/47 (27%), Positives = 24/47 (50%)
 Frame = +2

Query: 352 ILNAGPILSKLREVDLVHRNHTRPRCYPLLRIMCVLDPSCVIQKVHH 398
           +L   PIL+      L  +N+  P+C    +++C +  SC  Q++ H
Sbjct: 56  VLAYSPILNGTSIFQL*DKNNRSPKCRDHEKLICKVVSSCRKQQIKH 196


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.345    0.152    0.506 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,510,417
Number of Sequences: 28460
Number of extensions: 109403
Number of successful extensions: 728
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of query: 400
length of database: 4,897,600
effective HSP length: 92
effective length of query: 308
effective length of database: 2,279,280
effective search space: 702018240
effective search space used: 702018240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 56 (26.2 bits)