Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0348.7
         (778 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV780009                                                              151  3e-37
AV769206                                                              142  3e-34
BP066094                                                              114  5e-28
BP075943                                                              102  3e-22
BP084332                                                               89  3e-18
AU088980                                                               87  1e-17
BP057233                                                               79  2e-15
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)      73  2e-13
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p...    67  8e-12
BP043850                                                               66  2e-11
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela...    63  2e-10
TC18909                                                                61  8e-10
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)      60  1e-09
AV424544                                                               58  5e-09
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia...    53  2e-07
AV767042                                                               52  5e-07
AV766665                                                               51  6e-07
TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retro...    37  2e-05
TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomeras...    43  2e-04
AV428818                                                               42  4e-04

>AV780009 
          Length = 529

 Score =  151 bits (382), Expect = 3e-37
 Identities = 79/166 (47%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
 Frame = -1

Query: 590 KAVKRILRYLKGTITHGVLLQPCSMTQPLPLLAFCDADWGSDPDDRRSTSGSCVFLGPNL 649
           +A  R+LRY+KG    G+     S   PL L A+ D+DW   PD RRS +G  +FLG +L
Sbjct: 529 QAATRVLRYVKGAPAQGLFF---SADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSL 359

Query: 650 ISWTAKKQTLVARSSTEAEYRSLANTTAELLWVESLLTELKIAFTVPTVL-CDNMSTVLL 708
           ISW  KKQT V+RSS+EAEYR+LA T  E+ W+  L   LK+   +P  L CDN S + +
Sbjct: 358 ISWRTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHI 179

Query: 709 THNPILHTRTKHMEMDLFFVREKVQAKSLVVQHVPSEHQRADIFTK 754
            HNP  H RTKH+E+D   VR K+QA  + +  + + HQ ADIFTK
Sbjct: 178 AHNPTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTK 41


>AV769206 
          Length = 536

 Score =  142 bits (357), Expect = 3e-34
 Identities = 69/100 (69%), Positives = 82/100 (82%)
 Frame = -3

Query: 75  FLRPYNSNKLSLHSKECVFLGYSSSHKGYKCLDQSGRIYVSKDVLFHEHRFPYTTLFPSE 134
           FLRPYNS KLSLHSKECVF+GYS +HKGYKCLDQSGRIY+SKDVLFHEHRFPY +LFP E
Sbjct: 534 FLRPYNSTKLSLHSKECVFIGYSINHKGYKCLDQSGRIYISKDVLFHEHRFPYPSLFPDE 355

Query: 135 PFSPPTSSAEYFPLSTVPIISRSMPQPSPAPISTELANPG 174
             S  ++SAE+FPLST+PI+S + P   PA  S+  ++ G
Sbjct: 354 TTS--STSAEFFPLSTIPIVSHTTP---PALASSGFSSLG 250


>BP066094 
          Length = 532

 Score =  114 bits (285), Expect(2) = 5e-28
 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 1/148 (0%)
 Frame = +2

Query: 351 KPITVRLILSLAISRGWPLQQIDVNNAFLNGVLEEEVYMTQPPGFE-HKDKTLVCKLHKA 409
           K   +RL++S +++    L Q++V +AFLNG + EEVY+ QPPG E  K+   + KL K+
Sbjct: 89  KTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKKS 268

Query: 410 LYGLKQAPRAWFHRLKEVLLQFGFKASKCDPSLFTYNSPLGCIYMLIYVDDIILTGDSMV 469
           LYGLKQAPRAW+ RL   LL+      K D +LF        + + IYVDDII    +  
Sbjct: 269 LYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANPS 448

Query: 470 LIQQLTAKLHSIFALKQLGQLDYFLGVQ 497
           L ++ +  + + F ++ +G+L YFLG+Q
Sbjct: 449 LCKEFSEMMQAEFEMRMMGELKYFLGIQ 532



 Score = 27.7 bits (60), Expect(2) = 5e-28
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 334 YSQVQGFDYSETFSPVVK 351
           YSQ  G DY+ETF+PV +
Sbjct: 39  YSQQ*GIDYTETFAPVAR 92


>BP075943 
          Length = 547

 Score =  102 bits (253), Expect = 3e-22
 Identities = 64/178 (35%), Positives = 94/178 (51%), Gaps = 10/178 (5%)
 Frame = -3

Query: 454 MLIYVDDIILTGDSMVLIQQLTAKLHSIFALKQLGQLDYFLGVQVTHLANGSLLLNQTKY 513
           +L+YVDD++L G+ M  IQ + + LH  F +K LG+  YFLG+++    +G ++LNQ KY
Sbjct: 521 LLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSG-IVLNQRKY 345

Query: 514 INDLLTKVNMADAAPISTPMQFGAKLTKHG----------GTSLHDPTEYRSVVGALQYA 563
              L++          S    F  +   HG          GT L D   YR +VG L Y 
Sbjct: 344 ALQLISD---------SGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYL 192

Query: 564 TITRPEISYAVNKVCQFLSDPHEEHWKAVKRILRYLKGTITHGVLLQPCSMTQPLPLL 621
             TRP+I++AVN++ QFLS P + H + +   L+YL G+   G+     S T  LP L
Sbjct: 191 NTTRPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASSSTL*LPSL 18


>BP084332 
          Length = 368

 Score = 88.6 bits (218), Expect = 3e-18
 Identities = 46/115 (40%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
 Frame = +2

Query: 648 NLISWTAK-KQTLVARSSTEAEYRSLANTTAELLWVESLLTELKIAFTVPTVLCDNMSTV 706
           N+  W A   Q+ +A S+ EAEY S A  + ++LW++  L + +I  +   + CDN + +
Sbjct: 2   NVNFWEAT*GQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAI 181

Query: 707 LLTHNPILHTRTKHMEMDLFFVREKVQAKSLVVQHVPSEHQRADIFTKALSPTRF 761
            L+ NPILH+R KH+E+   F+R+ VQ   L+++ V ++HQ ADIFTK L+  RF
Sbjct: 182 SLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 346


>AU088980 
          Length = 360

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 41/106 (38%), Positives = 60/106 (55%)
 Frame = +2

Query: 2   VERKHRHIVETGLALLSHASMPLHFWDHAFLTATYLINRMSTTTLQGASPYFKLYGNHPD 61
           VERKHRHI+    AL+ H+ +P + W  A   A YLIN + +  L+G  PY  L  + P 
Sbjct: 11  VERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNNDSPT 190

Query: 62  FKSLKIFGSACFPFLRPYNSNKLSLHSKECVFLGYSSSHKGYKCLD 107
              LK+FG+ C+     +N  KL   +++CVFLG+ +   GY  +D
Sbjct: 191 LLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMD 328


>BP057233 
          Length = 473

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 36/76 (47%), Positives = 52/76 (68%)
 Frame = -2

Query: 696 PTVLCDNMSTVLLTHNPILHTRTKHMEMDLFFVREKVQAKSLVVQHVPSEHQRADIFTKA 755
           P + CDN+S   L  NP+LH R+KH+E+D+ ++R++V    +VV +VP+  Q AD  TK 
Sbjct: 451 PILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCLTKP 272

Query: 756 LSPTRFLLMRDKLNVV 771
           LS TRF  +RDKL V+
Sbjct: 271 LSHTRFSQLRDKLGVI 224


>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
          Length = 553

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 38/93 (40%), Positives = 55/93 (58%), Gaps = 1/93 (1%)
 Frame = +1

Query: 681 WVESLLTELKIAFTVPT-VLCDNMSTVLLTHNPILHTRTKHMEMDLFFVREKVQAKSLVV 739
           W+  LL +LK+ F  P  V CDN S   +  NP+ H RTKH+E+D   VRE++Q   + +
Sbjct: 4   WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183

Query: 740 QHVPSEHQRADIFTKALSPTRFLLMRDKLNVVD 772
             + S    ADI+TKALSP  F  +  KL +++
Sbjct: 184 LPISSSEPLADIYTKALSPQNFHQICAKLGLIN 282


>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
          Length = 670

 Score = 67.4 bits (163), Expect = 8e-12
 Identities = 37/96 (38%), Positives = 56/96 (57%), Gaps = 1/96 (1%)
 Frame = +1

Query: 678 ELLWVESLLTELKIAFTVPTVL-CDNMSTVLLTHNPILHTRTKHMEMDLFFVREKVQAKS 736
           EL W+  +L +L++ F  P++L CD+ S   +  N + H RTKH+++D   VREK+QAK 
Sbjct: 4   EL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAKL 183

Query: 737 LVVQHVPSEHQRADIFTKALSPTRFLLMRDKLNVVD 772
             +  + S  Q ADI TK L    F  +  KL V++
Sbjct: 184 FHLLPISSVDQTADILTKPLESGPFSHLVSKLGVLN 291


>BP043850 
          Length = 515

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
 Frame = -1

Query: 677 AELLWVESLLTELKIAFTVPTVL-CDNMSTVLLTHNPILHTRTKHMEMDLFFVREKVQAK 735
           +E++W+  LL+EL    + PT L  DN S + +  NP+ H  T+H+E+D   VRE    +
Sbjct: 515 SEIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRR 336

Query: 736 SLVVQHVPSEHQRADIFTKALSPTRFLLMRDKLNVVD 772
            + + HV +  Q ADI TK+L+  R   +  KL +V+
Sbjct: 335 VITLPHVSTSVQIADILTKSLTRQRHNFLVSKLMLVE 225


>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
           polyprotein from transposon TNT 1-94 [Contains: Protease
           ; Reverse transcriptase ; Endonuclease] , partial (9%)
          Length = 747

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 40/119 (33%), Positives = 62/119 (51%), Gaps = 7/119 (5%)
 Frame = +2

Query: 452 IYMLIYVDDIILTGDSMVLIQQLTAKLHSIFALKQLGQLDYFLGVQV-THLANGSLLLNQ 510
           I +L+YVDD+++ G +   +Q+L A+L   F +K LG  +  LG+Q+     +  + L+Q
Sbjct: 89  IILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRRIWLSQ 268

Query: 511 TKYINDLLTKVNMADAAPISTPMQFGAKLTKHGGTSLH------DPTEYRSVVGALQYA 563
             Y+  +L + NM D  PISTP+    KL+     S            Y S VG+L YA
Sbjct: 269 KNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYA 445


>TC18909 
          Length = 621

 Score = 60.8 bits (146), Expect = 8e-10
 Identities = 41/85 (48%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
 Frame = +2

Query: 565 ITRPEISYAVNKVCQFLSDPHEEHWKAVKRILRYL-KGTITHGVLLQPCSMTQPLPLLAF 623
           +T P+IS++VNKVC FLS+  EEH  A K IL    K   T G  +Q           AF
Sbjct: 323 LTSPQISFSVNKVC*FLSESLEEHGTAGKCILNVT*KAL*TMGFFIQ-------TNFPAF 481

Query: 624 CDADWGSDPDDRRSTSGSCVF-LGP 647
            DADW S+ DDRRST    VF LGP
Sbjct: 482 SDADWASNVDDRRSTFWEIVFTLGP 556



 Score = 40.8 bits (94), Expect(2) = 4e-08
 Identities = 17/23 (73%), Positives = 22/23 (94%)
 Frame = +2

Query: 341 DYSETFSPVVKPITVRLILSLAI 363
           DY+ET SPVVKP+TVR++LSLA+
Sbjct: 62  DYTETVSPVVKPVTVRILLSLAV 130



 Score = 33.9 bits (76), Expect(2) = 4e-08
 Identities = 15/17 (88%), Positives = 16/17 (93%)
 Frame = +1

Query: 320 GSINKYKARLVAKGYSQ 336
           GSINKYKARLVAKG+ Q
Sbjct: 1   GSINKYKARLVAKGFHQ 51


>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
          Length = 550

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 34/81 (41%), Positives = 48/81 (58%), Gaps = 1/81 (1%)
 Frame = +3

Query: 678 ELLWVESLLTELKIAFTVPTVL-CDNMSTVLLTHNPILHTRTKHMEMDLFFVREKVQAKS 736
           E LW+   L +L+IA  +  V+ CDN S + L  N + H RT+++E+D   V  KV    
Sbjct: 21  EALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGI 200

Query: 737 LVVQHVPSEHQRADIFTKALS 757
           L + HVPS  Q AD+FTK +S
Sbjct: 201 LHLLHVPSSDQVADVFTKTIS 263


>AV424544 
          Length = 276

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 37/91 (40%), Positives = 50/91 (54%)
 Frame = +3

Query: 423 RLKEVLLQFGFKASKCDPSLFTYNSPLGCIYMLIYVDDIILTGDSMVLIQQLTAKLHSIF 482
           +L   L   G+  S  D SLFT         +L+YVDD+IL G+ +  IQ +  KL   F
Sbjct: 6   KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185

Query: 483 ALKQLGQLDYFLGVQVTHLANGSLLLNQTKY 513
            +K LG L YFLG++V   + G L L+Q KY
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCG-LFLSQRKY 275


>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
          Length = 739

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
 Frame = -1

Query: 510 QTKYINDLLTKVNMADAAPISTPMQFGAKLTKHG---GTSLHDPTEYRSVVGALQYATIT 566
           Q  Y++D+L K  M ++  IST +  G K  + G   G    D T Y+S++G+++Y    
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTI--GGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTV 566

Query: 567 RPEISYAVNKVCQFLSDPHEEHWKAVKRILRYLKGTITHGVLLQPCSM 614
           R +I   V    +F+ +P + H +  +R LRY+KGT+  G+ +   +M
Sbjct: 565 RSDIVCGVGLRSRFM-EP*DCH*QGAQRSLRYIKGTLKDGIFMLVITM 425


>AV767042 
          Length = 444

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 20/44 (45%), Positives = 32/44 (72%)
 Frame = -3

Query: 336 QVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQIDVNNAFL 379
           Q  G D ++TFSPVVKP  +R + ++A+SR WP+ Q++V N ++
Sbjct: 349 QTAGVDCNKTFSPVVKPAPIRTVFTIALSRSWPIPQLNVQNLWI 218


>AV766665 
          Length = 601

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 33/90 (36%), Positives = 47/90 (51%), Gaps = 4/90 (4%)
 Frame = +3

Query: 586 EEHWKAVK----RILRYLKGTITHGVLLQPCSMTQPLPLLAFCDADWGSDPDDRRSTSGS 641
           +  W ++K    RI  YLK     G L Q    +    +  F  AD+     DR ST G 
Sbjct: 336 KNRWSSLKTFTTRIF*YLKANSRRGPLFQKEGKSS---MDGFTYADYLGSIVDRLSTMGY 506

Query: 642 CVFLGPNLISWTAKKQTLVARSSTEAEYRS 671
            +FL  NL++W +K+Q ++ARSS EAE R+
Sbjct: 507 YMFLSGNLVTWRSKQQNIIARSSGEAELRA 596


>TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement pol
           polyprotein, partial (3%)
          Length = 517

 Score = 37.4 bits (85), Expect(2) = 2e-05
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = -1

Query: 645 LGPNLISWTAKKQTLVARSSTEAEYRSLANTT 676
           L  NLISW +K+  +VARS  EAE+R +A  T
Sbjct: 517 LSDNLISWKSKETIIVARSRAEAEFRVMATAT 422



 Score = 28.5 bits (62), Expect(2) = 2e-05
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 717 RTKHMEMDLFFVREKVQAKSLVVQHVPSEHQRADIFTKA 755
           R KH+E+D  F+ ++     +  + V S  Q  D+FTK+
Sbjct: 309 RAKHIEIDFHFL*DRRLYLDISTRFVNSNDQLTDVFTKS 193


>TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
           precursor  , partial (81%)
          Length = 1355

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 41/134 (30%), Positives = 57/134 (41%), Gaps = 7/134 (5%)
 Frame = +2

Query: 121 HEHRFPYTTLFPSEPFSPPTSS-AEYFPLSTVP--IISRSMPQPSPAPISTELANPGPLS 177
           H H  P  T  P     PPT S A   PL+  P  + + S+P PSP   S +     P +
Sbjct: 278 HHHLSPPHTTMP-----PPTLSYAPPLPLNYAPPPLPNPSVPSPSPKTTSRDSPPTRPST 442

Query: 178 PQSEASDLQSQPSPIPTGS--GLASTSQPAEHASSESAHQEMATSS--GVHAASSASTVA 233
             S A    S P+P P  S    AS S PA   +S ++    A  S     A+ S S+  
Sbjct: 443 TSSPAWSSASAPAPPPPSSSPSSASFSPPANSPTSSASPPPSARRSRRDPSASRSPSSTT 622

Query: 234 VPVNAHPMQTRSKS 247
           +P +  P    ++S
Sbjct: 623 IPASISPSTAPTRS 664



 Score = 31.2 bits (69), Expect = 0.66
 Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 18/95 (18%)
 Frame = +2

Query: 126 PYTTLFPSEPFSPPTSSAEYFPLSTVPIISRSMPQPSPAPIS------TELANPGPL--- 176
           P TT   S P  P T+S+  +  ++ P        PS A  S      T  A+P P    
Sbjct: 398 PKTTSRDSPPTRPSTTSSPAWSSASAPAPPPPSSSPSSASFSPPANSPTSSASPPPSARR 577

Query: 177 ---------SPQSEASDLQSQPSPIPTGSGLASTS 202
                    SP S        PS  PT S L+STS
Sbjct: 578 SRRDPSASRSPSSTTIPASISPSTAPTRSTLSSTS 682


>AV428818 
          Length = 417

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
 Frame = +3

Query: 129 TLFPSEPFSPPTSSAEYFPL--STVPIISRSMPQPSPAPISTELANPGPLSPQSEASDLQ 186
           TL  + P S P +   + P   S  P  + S P+P+    ST  A P  LSP++  S   
Sbjct: 69  TLSAATPPSSPQTHQRH*PQRRSQEPPSTSSNPKPTRNASSTSAAPP--LSPRTSTSTAS 242

Query: 187 SQPSPIPTGSGLASTSQPAEHASSESAHQEMATSSGVHAASSASTVAVP 235
             PSP P  S  A+TS P+ ++S  S    + +++ V + + + + A P
Sbjct: 243 PSPSPSP-NSKTATTSPPSTNSSGTSPPSALTSATSVSSRNPSCSTARP 386



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 24/86 (27%), Positives = 37/86 (42%)
 Frame = +3

Query: 126 PYTTLFPSEPFSPPTSSAEYFPLSTVPIISRSMPQPSPAPISTELANPGPLSPQSEASDL 185
           P +T    +P    +S++   PLS     S + P PSP+P S         SP S  S  
Sbjct: 144 PPSTSSNPKPTRNASSTSAAPPLSPRTSTSTASPSPSPSPNS----KTATTSPPSTNSSG 311

Query: 186 QSQPSPIPTGSGLASTSQPAEHASSE 211
            S PS + + + ++S +     A  E
Sbjct: 312 TSPPSALTSATSVSSRNPSCSTARPE 389


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,473,256
Number of Sequences: 28460
Number of extensions: 236953
Number of successful extensions: 2413
Number of sequences better than 10.0: 315
Number of HSP's better than 10.0 without gapping: 2006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2231
length of query: 778
length of database: 4,897,600
effective HSP length: 97
effective length of query: 681
effective length of database: 2,136,980
effective search space: 1455283380
effective search space used: 1455283380
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)


Lotus: description of TM0348.7