BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0348.6
(408 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12352 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein... 441 e-125
TC15717 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein... 340 2e-94
TC15418 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein... 167 2e-42
TC10904 weakly similar to UP|Q62258 (Q62258) Spi2 proteinase inh... 161 2e-40
BI420912 160 3e-40
AV767474 154 3e-38
AW428704 140 4e-34
AU088851 69 5e-25
TC15011 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Fragm... 101 2e-22
BP038032 100 6e-22
AU089397 92 1e-19
BP048545 91 5e-19
TC11309 similar to UP|Q9FUV8 (Q9FUV8) Phloem serpin-1, partial (... 76 9e-15
TC10025 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein... 75 2e-14
TC9744 similar to UP|Q40066 (Q40066) Protein zx, partial (7%) 74 4e-14
TC19574 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein... 69 2e-12
BP034134 68 3e-12
TC16721 weakly similar to UP|P93692 (P93692) Serpin, partial (9%) 67 4e-12
BP051691 54 1e-10
BP073359 60 7e-10
>TC12352 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein
(Fragment), partial (25%)
Length = 799
Score = 441 bits (1135), Expect = e-125
Identities = 229/275 (83%), Positives = 247/275 (89%)
Frame = +1
Query: 5 KSKSTRCQSDVALSFTKHLFSKEDYQEKNLIFSPLSLYAALSVMAAGSEGRTLDELLSFL 64
KSKS DV LSFT+HLFSKEDYQEKNLI+SPLSLYAALSV+AAGSEGRT DELLSFL
Sbjct: 1 KSKSM----DVPLSFTQHLFSKEDYQEKNLIYSPLSLYAALSVIAAGSEGRTFDELLSFL 168
Query: 65 RFDSIDHLNTYFSQGISPVFSDEDPASSPSQHHLSFTNGMFIDTTVSLSYPFRRLLSTHY 124
RFDSID+LNT+FSQ ISPVF D D A+SP QH+ NG+FIDTTVSLSYPFRRLLSTHY
Sbjct: 169 RFDSIDNLNTFFSQAISPVFFDND-AASPLQHY----NGIFIDTTVSLSYPFRRLLSTHY 333
Query: 125 NASLASLDFNLRGDSVLHDVNSLIEQESNGLITQLLPPGTVTNLTKLIFANALRFQGMWK 184
NA+L SLDFNLRG VLH++NSLIE+++NG ITQLLPPGTVTNLT+LIFANAL FQGMWK
Sbjct: 334 NANLTSLDFNLRGGKVLHEMNSLIEEDTNGHITQLLPPGTVTNLTRLIFANALCFQGMWK 513
Query: 185 HTLDGLTHVSSFNLLSGTSVKVPYMTTFKKTQYVRAFDGFKILRLPYKQGRDRQRRFSMC 244
H DGLT+VS FNLL+GTSVKVP+MTT K TQYVRAFDGFKILRLPYKQGRDRQRRFSMC
Sbjct: 514 HKFDGLTYVSPFNLLNGTSVKVPFMTTCKNTQYVRAFDGFKILRLPYKQGRDRQRRFSMC 693
Query: 245 IFLPDAQDGLSALIQKLSSEPGFLKGKLPHRKVRV 279
IFLPDAQDGLSALIQKLSSEP FLKGKLP RKVRV
Sbjct: 694 IFLPDAQDGLSALIQKLSSEPCFLKGKLPRRKVRV 798
>TC15717 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein
(Fragment), partial (26%)
Length = 925
Score = 340 bits (873), Expect = 2e-94
Identities = 177/304 (58%), Positives = 228/304 (74%), Gaps = 1/304 (0%)
Frame = +1
Query: 1 MEIQKSKSTRCQSDVALSFTKHLFSKEDYQEKNLIFSPLSLYAALSVMAAGSEGRTLDEL 60
ME+QKS S + Q DVALSF LFS E Y +N++FSPLSL+ AL++MAAG+ G TLDEL
Sbjct: 19 MELQKSIS-KSQEDVALSFANRLFSTEAYHNENIVFSPLSLHVALAIMAAGAHGSTLDEL 195
Query: 61 LSFLRFDSIDHLNTYFSQGISPVFSDEDPASSPSQHHLSFTNGMFIDTTVSLSYPFRRLL 120
LSFLRFDS+DHLNT FSQ +S VFSD D A+ P H LSF NGM++D ++SL++ F++L+
Sbjct: 196 LSFLRFDSVDHLNTIFSQVVSAVFSDNDDAAPPPTHRLSFANGMWVDKSLSLTHSFKQLV 375
Query: 121 STHYNASLASLDFNLRGDSVLHDVNSLIEQESNGLITQLLPPGTVTNLTKLIFANALRFQ 180
+THY A+L S+DF + D V +VN +E+ +NGLI +LL PG V T+LIFANAL F+
Sbjct: 376 ATHYKATLDSVDFWNKADQVCDEVNLWVEKGTNGLIKELLSPGAVDKTTRLIFANALHFK 555
Query: 181 GMWKHT-LDGLTHVSSFNLLSGTSVKVPYMTTFKKTQYVRAFDGFKILRLPYKQGRDRQR 239
G W+H L ++ F+LL GTSV VP MT + Q +R FDGFKIL LPYKQG D +R
Sbjct: 556 GEWEHKFLARYSYSYRFHLLDGTSVVVPLMTN-DEEQLIRVFDGFKILGLPYKQGTDEKR 732
Query: 240 RFSMCIFLPDAQDGLSALIQKLSSEPGFLKGKLPHRKVRVRPFRVPKFNISFTFEASNVL 299
FSM I LP A+DGLS LI+K++SEPGFL+GKLP +KV++ F +P+F+ISF FEAS+VL
Sbjct: 733 LFSMYILLPHAKDGLSDLIRKMASEPGFLEGKLPQQKVKLNFFLIPRFDISFAFEASDVL 912
Query: 300 KEVG 303
KE G
Sbjct: 913 KEFG 924
>TC15418 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein
(Fragment), partial (44%)
Length = 602
Score = 167 bits (424), Expect = 2e-42
Identities = 94/204 (46%), Positives = 141/204 (69%), Gaps = 1/204 (0%)
Frame = +1
Query: 1 MEIQKSKSTRCQSDVALSFTKHLFSKEDYQEKNLIFSPLSLYAALSVMAAGSEGRTLDEL 60
M++++S T Q+DV+L+ K LFSK ++KN +FSPLSL+ LS++AAGSEG TL +L
Sbjct: 7 MDLRESIET--QTDVSLTIAKLLFSKHS-KDKNAVFSPLSLHVVLSILAAGSEGPTLHQL 177
Query: 61 LSFLRFDSIDHLNTYFSQGISPVFSDEDPASSPSQHHLSFTNGMFIDTTVSLSYPFRRLL 120
L+FLR +S DHLN++ SQ +S V SD ASS L F +G++++ +++L+ F++L+
Sbjct: 178 LTFLRSNSTDHLNSFASQLVSVVLSD---ASSVGGPRLCFADGVWVEQSLTLNPSFKQLV 348
Query: 121 STHYNASLASLDFNLRGDSVLHDVNSLIEQESNGLITQLLPPGTVTNLTKLIFANALRFQ 180
+ Y+A+LAS+DF + V ++VN+ E+E+NGL+ LLP G+V T+LIFANAL F+
Sbjct: 349 TADYHAALASVDFQTKAVEVANEVNAWAEKETNGLVKDLLPAGSVDASTRLIFANALYFK 528
Query: 181 GMWKHTLD-GLTHVSSFNLLSGTS 203
G W D +T F+LL GTS
Sbjct: 529 GAWTEKFDASMTKDCDFHLLDGTS 600
>TC10904 weakly similar to UP|Q62258 (Q62258) Spi2 proteinase inhibitor,
partial (8%)
Length = 576
Score = 161 bits (408), Expect = 2e-40
Identities = 89/155 (57%), Positives = 114/155 (73%), Gaps = 2/155 (1%)
Frame = -1
Query: 1 MEIQKSKSTRCQSDVALSFTKHLFSKEDYQEKNLIFSPLSLYAALSVMAAGSEGRTLDEL 60
ME++KSKS DVAL TKHLFSK DYQ KN++FSP SL AALSVMAAGS+ RTLDEL
Sbjct: 453 MELEKSKSK--SMDVALGLTKHLFSKADYQGKNIVFSPFSLQAALSVMAAGSKDRTLDEL 280
Query: 61 LSFLRFDSIDHLNTYFSQGISPVFSDEDPASSPS--QHHLSFTNGMFIDTTVSLSYPFRR 118
LSFLRFDSID L T+FSQ I PV + A + + HHL F NG++ D ++SLS+ F++
Sbjct: 279 LSFLRFDSIDDLTTFFSQVIFPVLISDAAADADTDGSHHLCFANGIWADDSLSLSHRFKQ 100
Query: 119 LLSTHYNASLASLDFNLRGDSVLHDVNSLIEQESN 153
L++THY A+L +LDF + V +VNS IE+E++
Sbjct: 99 LVATHYKATLTALDF--QTTEVHREVNSWIEKETD 1
>BI420912
Length = 508
Score = 160 bits (406), Expect = 3e-40
Identities = 83/131 (63%), Positives = 103/131 (78%)
Frame = +2
Query: 1 MEIQKSKSTRCQSDVALSFTKHLFSKEDYQEKNLIFSPLSLYAALSVMAAGSEGRTLDEL 60
M++QKSKS D LSFTKH+ SKE+YQEKNL+FSPLSLYAALSVMAAG++G TLDEL
Sbjct: 146 MDLQKSKSNSI--DAVLSFTKHVLSKEEYQEKNLVFSPLSLYAALSVMAAGADGLTLDEL 319
Query: 61 LSFLRFDSIDHLNTYFSQGISPVFSDEDPASSPSQHHLSFTNGMFIDTTVSLSYPFRRLL 120
LSFLRFDS+DHL T+FSQ +SPV +D HLSF NGM+ D ++S+ + F++L+
Sbjct: 320 LSFLRFDSVDHLTTFFSQDLSPVLFSDD--------HLSFANGMWGDQSLSIFHSFKQLV 475
Query: 121 STHYNASLASL 131
STHY A+LASL
Sbjct: 476 STHYKATLASL 508
>AV767474
Length = 380
Score = 154 bits (389), Expect = 3e-38
Identities = 77/115 (66%), Positives = 96/115 (82%)
Frame = +3
Query: 10 RCQSDVALSFTKHLFSKEDYQEKNLIFSPLSLYAALSVMAAGSEGRTLDELLSFLRFDSI 69
RCQ+DVAL+ TKHLFSK++YQ+KNL+FSPLSL+A LS++AAGS G TLDELLSFLRFDSI
Sbjct: 54 RCQTDVALTITKHLFSKQEYQDKNLMFSPLSLHAVLSLLAAGSAGSTLDELLSFLRFDSI 233
Query: 70 DHLNTYFSQGISPVFSDEDPASSPSQHHLSFTNGMFIDTTVSLSYPFRRLLSTHY 124
DHLNT+FSQ IS A++PS H L+F NGM++D +VSLS F++LL+THY
Sbjct: 234 DHLNTFFSQLIS--------AAAPSSHPLTFVNGMWVDKSVSLSNSFKQLLATHY 374
>AW428704
Length = 369
Score = 140 bits (353), Expect = 4e-34
Identities = 79/137 (57%), Positives = 91/137 (65%)
Frame = +1
Query: 215 TQYVRAFDGFKILRLPYKQGRDRQRRFSMCIFLPDAQDGLSALIQKLSSEPGFLKGKLPH 274
T+ +R FDGFKIL LPYKQG D +R FSM I LP A+DGLS LI+K++SEPGFL
Sbjct: 10 TRLIRVFDGFKILGLPYKQGTDEKRLFSMYILLPHAKDGLSDLIRKMASEPGFL------ 171
Query: 275 RKVRVRPFRVPKFNISFTFEASNVLKEVGVVSPFSPMDAHFTKMVNVNSPSDNLFVQSIF 334
EAS+VLKE GVVSPFS DA FTKMV VNSP D L V+SIF
Sbjct: 172 -------------------EASDVLKEFGVVSPFSQRDADFTKMVKVNSPLDALSVESIF 294
Query: 335 HKAFIEVNEKGTKATAA 351
K FI+VNE+GT+A AA
Sbjct: 295 QKVFIKVNEQGTEAAAA 345
>AU088851
Length = 663
Score = 68.6 bits (166), Expect(2) = 5e-25
Identities = 45/88 (51%), Positives = 52/88 (58%)
Frame = +3
Query: 50 AGSEGRTLDELLSFLRFDSIDHLNTYFSQGISPVFSDEDPASSPSQHHLSFTNGMFIDTT 109
AGSEG TLDELLSFLRFDS D LN++ SQ +S V D A P LSF + M+ D T
Sbjct: 264 AGSEGSTLDELLSFLRFDSTDRLNSFTSQLVSDVLYVNDAA--PPSPRLSFASRMWADKT 437
Query: 110 VSLSYPFRRLLSTHYNASLASLDFNLRG 137
+ LS P L LASLDF +G
Sbjct: 438 LFLSLPSYNLWLL-IKELLASLDFXKQG 518
Score = 62.4 bits (150), Expect(2) = 5e-25
Identities = 30/43 (69%), Positives = 36/43 (82%)
Frame = +1
Query: 7 KSTRCQSDVALSFTKHLFSKEDYQEKNLIFSPLSLYAALSVMA 49
+ST QSDVAL+ TKHLFSKE YQ +NL+FSPLSL+ LS+MA
Sbjct: 133 ESTSHQSDVALTLTKHLFSKEVYQHENLVFSPLSLHVVLSIMA 261
>TC15011 similar to UP|Q8GT65 (Q8GT65) Serpin-like protein (Fragment),
partial (20%)
Length = 623
Score = 101 bits (252), Expect = 2e-22
Identities = 50/89 (56%), Positives = 66/89 (73%)
Frame = +2
Query: 312 DAHFTKMVNVNSPSDNLFVQSIFHKAFIEVNEKGTKATAATWSALARQCARDHHPSIDFI 371
DAH TKMV+ ++ L+V +IFHK+FIEVNE+GT+A AA+ + + + +DF+
Sbjct: 8 DAHLTKMVDSSTVGQGLYVSNIFHKSFIEVNEEGTEAAAAS-AVTIKLRSLQVLTRVDFV 184
Query: 372 ADHPFLFLIREDFTGTILFVGQVLNPLDG 400
ADHPFLF+IRED TGT+LF GQVLNPL G
Sbjct: 185 ADHPFLFVIREDLTGTVLFTGQVLNPLAG 271
>BP038032
Length = 437
Score = 100 bits (248), Expect = 6e-22
Identities = 68/143 (47%), Positives = 84/143 (58%), Gaps = 11/143 (7%)
Frame = +1
Query: 7 KSTRCQSDVALSFTKHLFSKEDYQEKNLIFSPLSLYAALSVMAAGSEGRTLDE-LLSFL- 64
KS RCQ+DVALS TKHLFSKE+YQ+KNLIFSPLSL+ ALSVMA GS G TL LSF
Sbjct: 28 KSMRCQTDVALSVTKHLFSKEEYQQKNLIFSPLSLHVALSVMAGGSAGGTLSRTFLSFFG 207
Query: 65 ------RFDSIDHLNTYFSQG-ISPVFSDEDPASSPSQHHLSFTNGMFIDTTVSLSYPF- 116
F+++ +L F +G +PV S L NGM++D ++ +P
Sbjct: 208 IGSHWKNFNNLSNLILNFHRGPWTPVVI--------SPLRLPLANGMWVD-*ITFHFPIL 360
Query: 117 -RRLLSTHYNASLASLDFNLRGD 138
HY A+LASLDF GD
Sbjct: 361 PNNW*PLHYKATLASLDFQKNGD 429
>AU089397
Length = 306
Score = 92.4 bits (228), Expect = 1e-19
Identities = 47/100 (47%), Positives = 70/100 (70%)
Frame = +3
Query: 34 LIFSPLSLYAALSVMAAGSEGRTLDELLSFLRFDSIDHLNTYFSQGISPVFSDEDPASSP 93
++FSPLSL LS++AAGS+G TLDELLSFL +S DHLN++ SQ IS V SD PA P
Sbjct: 9 IVFSPLSLQVVLSIIAAGSDGSTLDELLSFLGSNSTDHLNSFASQLISTVLSDAAPAGGP 188
Query: 94 SQHHLSFTNGMFIDTTVSLSYPFRRLLSTHYNASLASLDF 133
L F ++++ ++ +++ F ++++T Y A+L S+DF
Sbjct: 189 ---RLCFAXXVWVEKSLPVNHSFXQVMNTDYXATLTSVDF 299
>BP048545
Length = 452
Score = 90.5 bits (223), Expect = 5e-19
Identities = 41/72 (56%), Positives = 55/72 (75%)
Frame = -2
Query: 327 NLFVQSIFHKAFIEVNEKGTKATAATWSALARQCARDHHPSIDFIADHPFLFLIREDFTG 386
+L+V +IFHK+FIEVNE+GT+A AA+ + ++ +DF+ADHPF F+IRE+ TG
Sbjct: 436 DLYVSNIFHKSFIEVNEEGTRAAAASAGIVLKRSLSPRPTRVDFVADHPFFFVIREEMTG 257
Query: 387 TILFVGQVLNPL 398
TILF GQVLNPL
Sbjct: 256 TILFTGQVLNPL 221
>TC11309 similar to UP|Q9FUV8 (Q9FUV8) Phloem serpin-1, partial (10%)
Length = 472
Score = 76.3 bits (186), Expect = 9e-15
Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +3
Query: 327 NLFVQSI-FHKAFIEVNEKGTKATAATWSALARQCARDHHPSIDFIADHPFLFLIREDFT 385
N ++Q+ F + ++++E+GT A AAT LA + IDF+ADHPF FLIREDFT
Sbjct: 66 NFYMQTAYFTRLSLKLDEEGTTAAAATAMLLASRSGPSVRAGIDFVADHPFFFLIREDFT 245
Query: 386 GTILFVGQVLNP 397
GTILF+GQVL+P
Sbjct: 246 GTILFIGQVLHP 281
Score = 50.1 bits (118), Expect = 7e-07
Identities = 25/37 (67%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +2
Query: 306 SPFSPMDAHFTKMVNVNSPSDN-LFVQSIFHKAFIEV 341
SPFS DA FTKMV VNSP D L+ S+FHKAFI+V
Sbjct: 2 SPFSSTDADFTKMVEVNSPLDELLYADSVFHKAFIKV 112
>TC10025 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein
(Fragment), partial (15%)
Length = 672
Score = 75.1 bits (183), Expect = 2e-14
Identities = 43/67 (64%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Frame = +1
Query: 340 EVNEKGTKATAATWSALARQCARDHHPSIDFIADHPFLFLIREDFTGTILFVGQVLNPLD 399
EVNE+ T A AAT + + A P IDF+ADHPFL L+RED TGTILFVGQVLNPLD
Sbjct: 1 EVNEEETVAVAATAARMVLGGA-GLCPHIDFVADHPFLLLVREDITGTILFVGQVLNPLD 177
Query: 400 --GLPVK 404
G PVK
Sbjct: 178 GAGTPVK 198
>TC9744 similar to UP|Q40066 (Q40066) Protein zx, partial (7%)
Length = 527
Score = 73.9 bits (180), Expect = 4e-14
Identities = 39/61 (63%), Positives = 46/61 (74%)
Frame = +1
Query: 344 KGTKATAATWSALARQCARDHHPSIDFIADHPFLFLIREDFTGTILFVGQVLNPLDGLPV 403
KGT+AT+AT ++ + F+ADHPFLFLIREDFTGTILFVGQVLNPL+G PV
Sbjct: 1 KGTEATSAT--VVSGRKRLGGFLGTYFVADHPFLFLIREDFTGTILFVGQVLNPLEGAPV 174
Query: 404 K 404
K
Sbjct: 175 K 177
>TC19574 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein
(Fragment), partial (8%)
Length = 414
Score = 68.6 bits (166), Expect = 2e-12
Identities = 39/64 (60%), Positives = 43/64 (66%), Gaps = 2/64 (3%)
Frame = -3
Query: 346 TKATAATWSALARQCARDHHPSIDFIADHPFLFLIREDFTGTILFVGQVLNPLDGLP--V 403
TKATAA S L IDF+A+HPFLFLIRE+ TGT LF+GQVLNPLDG V
Sbjct: 409 TKATAAAGSLLGTYF---RPAGIDFVANHPFLFLIREELTGTFLFIGQVLNPLDGADPLV 239
Query: 404 KVSN 407
KV N
Sbjct: 238 KVCN 227
>BP034134
Length = 556
Score = 67.8 bits (164), Expect = 3e-12
Identities = 32/43 (74%), Positives = 33/43 (76%)
Frame = -1
Query: 363 DHHPSIDFIADHPFLFLIREDFTGTILFVGQVLNPLDGLPVKV 405
D IDF ADHPFLFLIRED TGTILF+GQVLNPLDG V
Sbjct: 496 DRPTGIDFEADHPFLFLIREDLTGTILFIGQVLNPLDGAAASV 368
>TC16721 weakly similar to UP|P93692 (P93692) Serpin, partial (9%)
Length = 553
Score = 67.4 bits (163), Expect = 4e-12
Identities = 30/35 (85%), Positives = 33/35 (93%)
Frame = +2
Query: 366 PSIDFIADHPFLFLIREDFTGTILFVGQVLNPLDG 400
P ++FIADHPFLFLIREDF+GTILFVGQVLNPL G
Sbjct: 29 PGLEFIADHPFLFLIREDFSGTILFVGQVLNPLGG 133
>BP051691
Length = 428
Score = 53.5 bits (127), Expect(2) = 1e-10
Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 3/47 (6%)
Frame = -2
Query: 309 SPMDAHFTKMVNVNS---PSDNLFVQSIFHKAFIEVNEKGTKATAAT 352
S DA+FT MV+ S PSD L++ ++FHKAFIEVNE+GT+A AA+
Sbjct: 427 SRCDANFTNMVDSPSDEFPSDELYIDNMFHKAFIEVNEEGTEAAAAS 287
Score = 28.9 bits (63), Expect(2) = 1e-10
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -1
Query: 382 EDFTGTILFVGQVLNP 397
ED +GTILF+G+VL+P
Sbjct: 275 EDLSGTILFIGRVLHP 228
>BP073359
Length = 388
Score = 60.1 bits (144), Expect = 7e-10
Identities = 29/52 (55%), Positives = 37/52 (70%), Gaps = 1/52 (1%)
Frame = -3
Query: 347 KATAATWSALARQCARDH-HPSIDFIADHPFLFLIREDFTGTILFVGQVLNP 397
+A AA+ L R C D DF+ADHPFLFLI+ED +GTILF+G+VL+P
Sbjct: 386 EAAAASSGRLVRMCDSDSVSTDTDFVADHPFLFLIKEDLSGTILFIGRVLHP 231
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,570,756
Number of Sequences: 28460
Number of extensions: 85117
Number of successful extensions: 432
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of query: 408
length of database: 4,897,600
effective HSP length: 92
effective length of query: 316
effective length of database: 2,279,280
effective search space: 720252480
effective search space used: 720252480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0348.6