BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0348.16
(376 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP066856 133 4e-32
BP042402 130 5e-31
TC9308 weakly similar to UP|Q9SQ55 (Q9SQ55) Nuclear RNA binding ... 97 2e-26
BP058107 105 9e-24
BP085151 99 2e-21
BP066148 71 3e-13
TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (... 44 6e-05
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 42 2e-04
TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.3... 42 2e-04
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 42 2e-04
TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%) 41 3e-04
BP067482 40 5e-04
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 40 6e-04
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 39 0.001
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 39 0.002
TC19261 similar to UP|BAD06577 (BAD06577) Cell wall protein Awa1... 39 0.002
TC8572 similar to UP|Q9SCM3 (Q9SCM3) 40S ribosomal protein S2 ho... 38 0.002
AV408970 37 0.004
AV769326 37 0.005
TC20112 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 37 0.005
>BP066856
Length = 485
Score = 133 bits (335), Expect = 4e-32
Identities = 77/144 (53%), Positives = 95/144 (65%), Gaps = 3/144 (2%)
Frame = -2
Query: 235 DAAFADYVSYLFPKGDPVIEEGQAVGGYMDWYAIVSHCFIIPDERRIDLSAVAALRRALE 294
DAA+AD+V +L P+G P G+ V YM WY+ VSH FIIPD+RR +LSAV +RRA++
Sbjct: 484 DAAYADFVPHLRPRGIPATYSGEXVEDYMRWYSGVSHRFIIPDDRREELSAVTVVRRAVD 305
Query: 295 VLELSLEVDDALLPGTQARALTKRALRILQ--DLAGTQGIAYAAGRGGLGAGGRAGGRSG 352
+LE SLEV DAL GT AR+L KRAL +++ GTQG+A+AA RG G GGR
Sbjct: 304 LLEQSLEVLDALAVGTHARSLIKRALDLIRSSSFIGTQGVAFAAVRG----AGAPGGRGR 137
Query: 353 GREGGGAGAMGGR-RGRGGRRGRG 375
G G GA GGR G GRRG G
Sbjct: 136 GGRARGDGARGGRAHGPRGRRGAG 65
>BP042402
Length = 409
Score = 130 bits (326), Expect = 5e-31
Identities = 70/96 (72%), Positives = 73/96 (75%), Gaps = 21/96 (21%)
Frame = -2
Query: 301 EVDDALLPGTQARALTKRALRILQDLAGTQGIAYAAGRGGLGAGGRAGGR---------- 350
EVDDALLPGTQARALT+RALRIL+DLAGTQGIAYAAGRGGLGAGGRAGGR
Sbjct: 408 EVDDALLPGTQARALTERALRILKDLAGTQGIAYAAGRGGLGAGGRAGGRAGGRAGGRAG 229
Query: 351 -----------SGGREGGGAGAMGGRRGRGGRRGRG 375
+GGREGG AGA GGRRGRGGRRGRG
Sbjct: 228 GRAGGREGGRAAGGREGGRAGARGGRRGRGGRRGRG 121
>TC9308 weakly similar to UP|Q9SQ55 (Q9SQ55) Nuclear RNA binding protein A,
partial (9%)
Length = 562
Score = 97.1 bits (240), Expect(2) = 2e-26
Identities = 51/92 (55%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Frame = +3
Query: 256 GQAVGGYMDWYAIVSHCFIIPDERRIDLSAVAALRRALEVLELSLEVDDALLPGTQARAL 315
G+AV YM WY+ VSH FIIPD+RR + SAV +RR +++LE SLEV DA GT +R+L
Sbjct: 9 GEAVEDYMRWYSAVSHRFIIPDDRREEFSAVTVMRRVVDLLEQSLEVPDAPAEGTHSRSL 188
Query: 316 TKRALRILQDLA--GTQGIAYAAGRGGLGAGG 345
T+RAL ++ A GTQG+A+AA RG AGG
Sbjct: 189 TERALDFIRSNAFIGTQGVAFAAVRGARAAGG 284
Score = 38.5 bits (88), Expect(2) = 2e-26
Identities = 22/41 (53%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 338 RGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGR----RGR 374
RGG G GGRA G EG A G RGRGGR RGR
Sbjct: 305 RGGKGRGGRARGEGAPAEGAPAEGARGGRGRGGRARGPRGR 427
Score = 32.0 bits (71), Expect = 0.17
Identities = 25/61 (40%), Positives = 28/61 (44%)
Frame = +2
Query: 309 GTQARALTKRALRILQDLAGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGR 368
G +AR R R + A +G RGG G GGRA G G R GAG RGR
Sbjct: 293 GDRARGGKGRGGRARGEGAPAEGAPAEGARGGRGRGGRARGPRGRR---GAG-----RGR 448
Query: 369 G 369
G
Sbjct: 449 G 451
>BP058107
Length = 496
Score = 105 bits (263), Expect = 9e-24
Identities = 64/126 (50%), Positives = 79/126 (61%), Gaps = 19/126 (15%)
Frame = -3
Query: 269 VSHCFIIPDERRIDLSAVAALRRALEVLELSLEVDDALLPGTQARALTKRALRILQ--DL 326
VSH FIIP++RR +LSAV+A+RR +E+LE SLEV A PGTQ R LT+RAL + +
Sbjct: 491 VSHVFIIPEDRREELSAVSAIRRGVELLEQSLEVPGAYAPGTQPRILTERALDLFRRSSF 312
Query: 327 AGTQGIAYAAGRGGLGAGGRA-GGRSGGREGGGAGAMGGR----------------RGRG 369
GTQG+A++A RG AGGRA GGR+ G G GA GGR RG
Sbjct: 311 VGTQGVAFSAIRGAAAAGGRARGGRARGGRPRGGGARGGRARGEGDPGEGVRGGRARGPR 132
Query: 370 GRRGRG 375
GRRG+G
Sbjct: 131 GRRGQG 114
>BP085151
Length = 360
Score = 98.6 bits (244), Expect = 2e-21
Identities = 54/81 (66%), Positives = 57/81 (69%), Gaps = 21/81 (25%)
Frame = -1
Query: 316 TKRALRILQDLAGTQGIAYAAGRGGLGAGGRAGGR---------------------SGGR 354
T+RALRIL+DLAGTQGIAYAAGRGGLGAGGRAGGR +GGR
Sbjct: 360 TERALRILKDLAGTQGIAYAAGRGGLGAGGRAGGRAGVRAGGRAGGRAGGREGGRAAGGR 181
Query: 355 EGGGAGAMGGRRGRGGRRGRG 375
EGG AGA G RRGRGGRRGRG
Sbjct: 180 EGGRAGARGVRRGRGGRRGRG 118
>BP066148
Length = 477
Score = 70.9 bits (172), Expect = 3e-13
Identities = 45/92 (48%), Positives = 56/92 (59%), Gaps = 9/92 (9%)
Frame = -2
Query: 293 LEVLELSLEVDDALLPGTQARALTKRALRILQDLA--GTQGIAYAAGRGGLGAGGRA--- 347
+++LE SLEV DA GT +R+LT+RAL +++ A GTQG+A+AA RG AG R
Sbjct: 476 VDLLEQSLEVSDAPAEGTHSRSLTERALDLIRSNAFIGTQGVAFAAVRGARAAGXRGRGD 297
Query: 348 ---GGRSGGREGGGAGAMGGR-RGRGGRRGRG 375
GGR G GA GGR RG GRRG G
Sbjct: 296 RARGGRGRGEGAPAEGARGGRARGPRGRRGAG 201
>TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (Fibrillarin
2) (AtFib2), partial (85%)
Length = 1116
Score = 43.5 bits (101), Expect = 6e-05
Identities = 25/44 (56%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Frame = +1
Query: 337 GRGGLGAG-GRAGGRSGGR------EGGGAGAMGGRRGRGGRRG 373
GRG G G G GGR GGR GGG G GGR GRGG RG
Sbjct: 76 GRGDRGRGRGDGGGRGGGRGTPFKARGGGRGGGGGRGGRGGGRG 207
Score = 42.4 bits (98), Expect = 1e-04
Identities = 20/39 (51%), Positives = 22/39 (56%)
Frame = +1
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRR 366
G +G + A GG G GG GGR GGR G G G GG R
Sbjct: 124 GGRGTPFKARGGGRGGGGGRGGRGGGRGGRGGGMKGGSR 240
Score = 30.8 bits (68), Expect = 0.38
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +1
Query: 328 GTQGIAYAAGRGGLGA----GGRAGGRSGGREGGGAGAMGGRRGRG 369
GT A GRGG G GG GGR GG +GG + R G
Sbjct: 133 GTPFKARGGGRGGGGGRGGRGGGRGGRGGGMKGGSRVVVEPHRHEG 270
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 41.6 bits (96), Expect = 2e-04
Identities = 25/42 (59%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -3
Query: 337 GRGGLGAGGRAGGRSGGREGGGAGAMGGRRGR--GGRR-GRG 375
GR G G GG GGR R GG G GGRRGR GG+R GRG
Sbjct: 290 GRSGGGGGGGGGGRRS-RGSGGGGTNGGRRGRGKGGKRVGRG 168
Score = 36.2 bits (82), Expect = 0.009
Identities = 21/39 (53%), Positives = 22/39 (55%)
Frame = -3
Query: 337 GRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
GRG G GG GG GGR G+G G GGRRGRG
Sbjct: 296 GRGRSGGGGGGGG--GGRRSRGSGGGGTN---GGRRGRG 195
Score = 32.7 bits (73), Expect = 0.10
Identities = 21/45 (46%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Frame = -3
Query: 338 RGGLGAGG-------RAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
RGG G G R GRS R G G GG G GGRR RG
Sbjct: 371 RGGRGRGSIWRRGGWRRRGRSRWR*GRGRSGGGGGGGGGGRRSRG 237
Score = 27.3 bits (59), Expect = 4.2
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -1
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGRE--GGGAGAMGGRRGRGG 370
G +G+ G G+ AG GG G E GGG +GG G GG
Sbjct: 415 GEEGVEGLEG-DGVVAGEEEGGVPFGVEEGGGGEAEVGGGEGEGG 284
>TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.35
{Arabidopsis thaliana;} , partial (16%)
Length = 1208
Score = 41.6 bits (96), Expect = 2e-04
Identities = 26/61 (42%), Positives = 29/61 (46%), Gaps = 16/61 (26%)
Frame = -1
Query: 331 GIAYAAGRGGLGAGGRAGGRS-------GGREGGGA---------GAMGGRRGRGGRRGR 374
G ++ G G G GG GGR+ GGR GGG G GGRRG GGR R
Sbjct: 500 GWGWSLGWGNRGVGGDQGGRA*GGSCRGGGRRGGGG*ICGCWRNHGGRGGRRGGGGRWRR 321
Query: 375 G 375
G
Sbjct: 320 G 318
Score = 34.7 bits (78), Expect = 0.027
Identities = 28/66 (42%), Positives = 31/66 (46%), Gaps = 18/66 (27%)
Frame = -1
Query: 328 GTQGIAYAAGRG---GLGAGGRA-GGRSGGREGGGAGAMGGRR--------------GRG 369
GT+G + G G LG G R GG GGR GG+ GGRR GRG
Sbjct: 533 GTKGYS*G*G*GWGWSLGWGNRGVGGDQGGRA*GGSCRGGGRRGGGG*ICGCWRNHGGRG 354
Query: 370 GRRGRG 375
GRRG G
Sbjct: 353 GRRGGG 336
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 41.6 bits (96), Expect = 2e-04
Identities = 22/39 (56%), Positives = 22/39 (56%)
Frame = +3
Query: 337 GRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G GG G GGR GG GG GGG G GG G GG G G
Sbjct: 336 GGGGYGGGGRGGGGYGG--GGGYGGSGGYGGGGGYGGGG 446
Score = 40.4 bits (93), Expect = 5e-04
Identities = 22/41 (53%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 337 GRGGLGAGGRAGGR--SGGREGGGAGAMGGRRGRGGRRGRG 375
G GG G GG GG GGR GGG G GG G GG G G
Sbjct: 306 GGGGYGGGGYGGGGYGGGGRGGGGYGGGGGYGGSGGYGGGG 428
Score = 39.3 bits (90), Expect = 0.001
Identities = 22/39 (56%), Positives = 22/39 (56%)
Frame = +3
Query: 337 GRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
GRGG G GG G G GGG G GG GRGG RG G
Sbjct: 360 GRGGGGYGGGGGYGGSGGYGGGGGYGGG--GRGGGRGGG 470
Score = 38.1 bits (87), Expect = 0.002
Identities = 26/54 (48%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 325 DLAGTQGIAYAAGR--GGLGAGGRAGGR-SGGREGGGAGAMGGRRGRGGRRGRG 375
++ G G A R GG G GGR GG GG GGG G GG RG GG G G
Sbjct: 234 EVTGPNGQAVQGTRRGGGAGGGGRGGGGYGGGGYGGG-GYGGGGRGGGGYGGGG 392
Score = 37.7 bits (86), Expect = 0.003
Identities = 22/40 (55%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 337 GRGGLGAGGRAGG-RSGGREGGGAGAMGGRRGRGGRRGRG 375
G GG G GG GG R GG GGG G GG G GG G G
Sbjct: 321 GGGGYGGGGYGGGGRGGGGYGGG-GGYGGSGGYGGGGGYG 437
Score = 33.5 bits (75), Expect = 0.059
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +3
Query: 337 GRGGLGAGGR--AGGRSGGREGGGAG 360
G GG G GG GGR GGR GGG G
Sbjct: 402 GSGGYGGGGGYGGGGRGGGRGGGGGG 479
Score = 32.7 bits (73), Expect = 0.10
Identities = 17/31 (54%), Positives = 17/31 (54%)
Frame = +3
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGG 358
G G G GG G GGR GGR GG GGG
Sbjct: 393 GYGGSGGYGGGGGYGGGGRGGGRGGG--GGG 479
>TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%)
Length = 562
Score = 41.2 bits (95), Expect = 3e-04
Identities = 20/37 (54%), Positives = 21/37 (56%)
Frame = +2
Query: 337 GRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRG 373
G GG GGR+GG GGR G G GR G GGR G
Sbjct: 137 GSGGRSGGGRSGGGRGGRFDSGRGGGRGRFGSGGRGG 247
Score = 39.7 bits (91), Expect = 8e-04
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = +2
Query: 281 IDLSAVAALRRALEVLELSLEVDDALLPGTQARALTKRALRILQDLAGTQGIAYAAG-RG 339
+D S ++ +ALE+ + L G A+ + R Q G G + G RG
Sbjct: 29 LDFSDTNSVNKALELHDSDL--------GGFTLAVDEAKPRDNQGSGGRSGGGRSGGGRG 184
Query: 340 GLGAGGRAGGRSGGREGGGAGAMGGR--RGRGGRRGRG 375
G GR GGR GG G GGR G GGR GRG
Sbjct: 185 GRFDSGRGGGRGRFGSGGRGGDRGGRGGSGGGGRGGRG 298
>BP067482
Length = 291
Score = 40.4 bits (93), Expect = 5e-04
Identities = 19/44 (43%), Positives = 26/44 (58%)
Frame = +2
Query: 15 RGPTMRFSFLRDLYPTAVRERRYEHAARMYLMHLVGATLFADKS 58
RGP++RFSFL+ + T V A R Y++ +G TL DKS
Sbjct: 128 RGPSLRFSFLQAIVETHVEANNEVPACRAYMLRWIGMTLVCDKS 259
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 40.0 bits (92), Expect = 6e-04
Identities = 22/50 (44%), Positives = 23/50 (46%)
Frame = +2
Query: 324 QDLAGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRG 373
QD+ G A G G GG GG GGR GG G GG R GG G
Sbjct: 548 QDIDGRNVTVNEAQARGRGGGGGGGGYGGGRREGGYGGGGGSRYSGGGGG 697
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/48 (47%), Positives = 24/48 (49%), Gaps = 5/48 (10%)
Frame = +2
Query: 328 GTQGIAYAAGR--GGLGAGGRA---GGRSGGREGGGAGAMGGRRGRGG 370
G G Y GR GG G GG + GG GG G G G GGRR GG
Sbjct: 608 GGGGGGYGGGRREGGYGGGGGSRYSGGGGGGYGGSGGGGYGGRREGGG 751
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 38.9 bits (89), Expect = 0.001
Identities = 20/35 (57%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 342 GAGGRAGGRSGGREGGGAGAM-GGRRGRGGRRGRG 375
G GG GGR GG GGG G GG G GG RG G
Sbjct: 322 GGGGGGGGRGGGGYGGGGGRREGGYGGGGGSRGYG 426
Score = 37.7 bits (86), Expect = 0.003
Identities = 25/55 (45%), Positives = 26/55 (46%), Gaps = 7/55 (12%)
Frame = +1
Query: 328 GTQGIAYAAG----RGGLGAGGRA---GGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G G Y G GG G GG + GG GG GGG G GGRR GG G G
Sbjct: 343 GRGGGGYGGGGGRREGGYGGGGGSRGYGGGGGGYGGGGGGGYGGRR-EGGYGGDG 504
Score = 29.3 bits (64), Expect = 1.1
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 347 AGGRSGGREGGGAGAMGGRRGRGGRRGRGH 376
A R GG GGG G GG G GGRR G+
Sbjct: 310 AQARGGGGGGGGRGG-GGYGGGGGRREGGY 396
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 38.5 bits (88), Expect = 0.002
Identities = 22/39 (56%), Positives = 22/39 (56%)
Frame = -1
Query: 337 GRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
GRGG G GG SGG GGG G GGR G G GRG
Sbjct: 200 GRGGPSQQGGRGGYSGG--GGGYGGGGGRGGGGMGSGRG 90
Score = 35.8 bits (81), Expect = 0.012
Identities = 22/55 (40%), Positives = 25/55 (45%)
Frame = -1
Query: 316 TKRALRILQDLAGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGG 370
T+R+ Q A G +GG G GG G GG GGG G G GRGG
Sbjct: 416 TERSAPPPQQAAAAPGGGGPGPQGGRGYGGPPQGGRGGGYGGGGGPGYGGGGRGG 252
Score = 34.7 bits (78), Expect = 0.027
Identities = 17/37 (45%), Positives = 19/37 (50%)
Frame = -1
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGG 364
G G + GRGG GG G GGR GGG G+ G
Sbjct: 200 GRGGPSQQGGRGGYSGGGGGYGGGGGRGGGGMGSGRG 90
Score = 34.3 bits (77), Expect = 0.035
Identities = 24/49 (48%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 330 QGIAYAAGRGGLGA-GGRA--GGRSGGREGGGAGAMGGRRGRGGRRGRG 375
Q A A G GG G GGR G GGR GG G G G GGR G G
Sbjct: 392 QQAAAAPGGGGPGPQGGRGYGGPPQGGRGGGYGGGGGPGYGGGGRGGHG 246
Score = 30.0 bits (66), Expect = 0.66
Identities = 21/57 (36%), Positives = 24/57 (41%), Gaps = 9/57 (15%)
Frame = -1
Query: 328 GTQGIAYAAGRG-GLGAGGRAG--------GRSGGREGGGAGAMGGRRGRGGRRGRG 375
G +G Y G G G G GGR G G +G G G + GRGG G G
Sbjct: 317 GGRGGGYGGGGGPGYGGGGRGGHGVPQQQYGGPPEYQGRGRGGPSQQGGRGGYSGGG 147
>TC19261 similar to UP|BAD06577 (BAD06577) Cell wall protein Awa1p, partial
(3%)
Length = 495
Score = 38.5 bits (88), Expect = 0.002
Identities = 27/56 (48%), Positives = 30/56 (53%), Gaps = 12/56 (21%)
Frame = -2
Query: 332 IAYAAGRGGLGAGGRA-------GGRSGGREGG----GAGAMGGR-RGRGGRRGRG 375
+A++A RG AGGRA GG GGR G G G GGR R GRRGRG
Sbjct: 263 LAFSAIRGAAAAGGRARGGRPRGGGARGGRARGEGDPGEGVRGGRARVPRGRRGRG 96
Score = 33.5 bits (75), Expect = 0.059
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -1
Query: 16 GPTMRFSFLRDLYPTAVRERRYEHAARMYLMHLVGATLFA 55
G T+RF L+ + +A+ RYE AAR++L++ + ATL A
Sbjct: 408 GQTLRFLTLKTMSTSAMDGGRYEDAARIWLVNPLAATLVA 289
>TC8572 similar to UP|Q9SCM3 (Q9SCM3) 40S ribosomal protein S2 homolog
(At3g57490), partial (91%)
Length = 1076
Score = 38.1 bits (87), Expect = 0.002
Identities = 18/30 (60%), Positives = 19/30 (63%)
Frame = +2
Query: 346 RAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
R GG GG + GG G G RGRGG RGRG
Sbjct: 74 RGGGERGGGDRGGFGRGFGGRGRGGDRGRG 163
Score = 34.7 bits (78), Expect = 0.027
Identities = 19/40 (47%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
Frame = +2
Query: 334 YAAGRGGLGAGGRAGGRSGG-REGGGAGAMGGRRGRGGRR 372
+ A G G R GG GG G G GG RGRGGRR
Sbjct: 53 FTASMAERGGGERGGGDRGGFGRGFGGRGRGGDRGRGGRR 172
Score = 31.2 bits (69), Expect = 0.29
Identities = 20/38 (52%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 337 GRGGLGAGGRAG-GRS-GGREGGGAGAMGGRRGRGGRR 372
G G G G R G GR GGR GG GGRR GRR
Sbjct: 77 GGGERGGGDRGGFGRGFGGRGRGGDRGRGGRRRGAGRR 190
>AV408970
Length = 195
Score = 37.4 bits (85), Expect = 0.004
Identities = 20/42 (47%), Positives = 21/42 (49%), Gaps = 3/42 (7%)
Frame = -1
Query: 337 GRGGLGAGGRAGGR---SGGREGGGAGAMGGRRGRGGRRGRG 375
G GG G G GG +GG GGG GA RG GG G G
Sbjct: 177 GGGGAGGEGADGGEEEVAGGDGGGGEGAEAAERGTGGGEGAG 52
Score = 26.6 bits (57), Expect = 7.2
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGR--RGRGGRRGRG 375
G +G + GRGG G G R R GGG G R RG G RR G
Sbjct: 163 GWRGSGWRGGRGG-GWGWRR------RRGGGGGGERDRWWRGSGRRRELG 35
>AV769326
Length = 262
Score = 37.0 bits (84), Expect = 0.005
Identities = 20/35 (57%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -1
Query: 342 GAGGRAGGRS---GGREGGGAGAMGGRRGRGGRRG 373
G GGR GGR GG G G G R GRGGRRG
Sbjct: 133 GGGGRIGGRRVRIGGWRGRGRRGGGRRAGRGGRRG 29
Score = 30.4 bits (67), Expect = 0.50
Identities = 23/56 (41%), Positives = 24/56 (42%), Gaps = 15/56 (26%)
Frame = -1
Query: 335 AAGRGGLGAGGRAG---------------GRSGGREGGGAGAMGGRRGRGGRRGRG 375
A G G G RAG G GGR GG +GG RGR GRRG G
Sbjct: 223 AGGARWFGGGWRAGRFL*RWSGEARRVRIGGGGGRIGGRRVRIGGWRGR-GRRGGG 59
>TC20112 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (11%)
Length = 523
Score = 37.0 bits (84), Expect = 0.005
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 11/54 (20%)
Frame = +2
Query: 334 YAAGRGGLGAGGRAGGRS----------GGR-EGGGAGAMGGRRGRGGRRGRGH 376
++ GRGG G GGR G R GGR GGG+ GGR GRGG G H
Sbjct: 350 FSVGRGG-GFGGRGGDRKYDTGRYSGGGGGRGRGGGSIRGGGRGGRGGGFGGRH 508
Score = 35.4 bits (80), Expect = 0.016
Identities = 23/43 (53%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 334 YAAGRGGLGAGGRAGGRSGGR-EGGGAGAMGGRRGRGGRRGRG 375
Y GR G GGR GR GG GGG G GG G GGR G G
Sbjct: 401 YDTGRYSGGGGGR--GRGGGSIRGGGRGGRGG--GFGGRHGGG 517
Score = 35.0 bits (79), Expect = 0.020
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Frame = +2
Query: 336 AGRGGLGAGGRAGGRSGGRE---------GGGAGAMGGRRGRGGRRGRG 375
+G +G GG GGR G R+ GGG G GG GGR GRG
Sbjct: 341 SGGFSVGRGGGFGGRGGDRKYDTGRYSGGGGGRGRGGGSIRGGGRGGRG 487
Score = 30.0 bits (66), Expect = 0.66
Identities = 17/35 (48%), Positives = 19/35 (53%), Gaps = 9/35 (25%)
Frame = +2
Query: 334 YAAGRGGLGAGG---RAGGRSG------GREGGGA 359
Y+ G GG G GG R GGR G GR GGG+
Sbjct: 416 YSGGGGGRGRGGGSIRGGGRGGRGGGFGGRHGGGS 520
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.140 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,299,487
Number of Sequences: 28460
Number of extensions: 90269
Number of successful extensions: 1726
Number of sequences better than 10.0: 258
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of query: 376
length of database: 4,897,600
effective HSP length: 92
effective length of query: 284
effective length of database: 2,279,280
effective search space: 647315520
effective search space used: 647315520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0348.16